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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    799001 8t8c:1U (2.6) BS07 MG ? GO:0000027 ... P60491 37433044
    799002 8t8c:1V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    799003 8t8c:1V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    799004 8t8c:1V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    799005 8t8c:1V (2.6) BS04 MG ? GO:0003723 ... P60492 37433044
    799006 8t8c:1V (2.6) BS05 MG ? GO:0003723 ... P60492 37433044
    799007 8t8c:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    799008 8t8c:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    799009 8t8c:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    799010 8t8c:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    799011 8t8c:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    799012 8t8c:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    799013 8t8c:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    799014 8t8c:1b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    799015 8t8c:1b (2.6) BS02 MG ? GO:0003735 ... P80371 37433044
    799016 8t8c:1c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    799017 8t8c:1d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    799018 8t8c:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    799019 8t8c:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    799020 8t8c:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    799021 8t8c:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    799022 8t8c:1g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    799023 8t8c:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    799024 8t8c:1i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    799025 8t8c:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    799026 8t8c:1k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    799027 8t8c:1k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    799028 8t8c:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    799029 8t8c:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    799030 8t8c:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 37433044
    799031 8t8c:1m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    799032 8t8c:1m (2.6) BS02 MG ? GO:0000049 ... P80377 37433044
    799033 8t8c:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    799034 8t8c:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    799035 8t8c:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    799036 8t8c:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    799037 8t8c:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    799038 8t8c:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    799039 8t8c:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    799040 8t8c:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    799041 8t8c:1t (2.6) BS01 rna ? GO:0003723 ... P80380 37433044
    799042 8t8c:1t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    799043 8t8c:1y (2.6) BS01 rna ? GO:0005515 ... P0AD49 37433044
    799044 8t8c:1y (2.6) BS02 MG ? GO:0005515 ... P0AD49 37433044
    799045 8t8c:20 (2.6) BS01 rna ? GO:0003735 ... P60493 37433044
    799046 8t8c:20 (2.6) BS02 rna ? GO:0003735 ... P60493 37433044
    799047 8t8c:20 (2.6) BS03 MG ? GO:0003735 ... P60493 37433044
    799048 8t8c:21 (2.6) BS01 rna ? GO:0003735 ... P60494 37433044
    799049 8t8c:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    799050 8t8c:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    799051 8t8c:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    799052 8t8c:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    799053 8t8c:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    799054 8t8c:25 (2.6) BS01 rna ? GO:0003735 ... P80339 37433044
    799055 8t8c:25 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    799056 8t8c:25 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    799057 8t8c:25 (2.6) BS04 ZN ? GO:0003735 ... P80339 37433044
    799058 8t8c:26 (2.6) BS01 rna ? GO:0000049 ... P35871 37433044
    799059 8t8c:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    799060 8t8c:27 (2.6) BS01 rna ? GO:0003735 ... P80340 37433044
    799061 8t8c:27 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    799062 8t8c:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    799063 8t8c:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    799064 8t8c:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    799065 8t8c:2D (2.6) BS01 rna ? GO:0002181 ... P60405 37433044
    799066 8t8c:2D (2.6) BS02 rna ? GO:0002181 ... P60405 37433044
    799067 8t8c:2D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    799068 8t8c:2D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    799069 8t8c:2D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    799070 8t8c:2D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    799071 8t8c:2D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    799072 8t8c:2D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    799073 8t8c:2D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    799074 8t8c:2D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    799075 8t8c:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    799076 8t8c:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    799077 8t8c:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    799078 8t8c:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    799079 8t8c:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    799080 8t8c:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    799081 8t8c:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    799082 8t8c:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    799083 8t8c:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    799084 8t8c:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    799085 8t8c:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    799086 8t8c:2I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 37433044
    799087 8t8c:2N (2.6) BS01 rna ? GO:0003729 ... P60488 37433044
    799088 8t8c:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    799089 8t8c:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    799090 8t8c:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    799091 8t8c:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    799092 8t8c:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    799093 8t8c:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    799094 8t8c:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    799095 8t8c:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    799096 8t8c:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    799097 8t8c:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    799098 8t8c:2T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    799099 8t8c:2T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    799100 8t8c:2U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    799101 8t8c:2U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    799102 8t8c:2V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    799103 8t8c:2V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    799104 8t8c:2V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    799105 8t8c:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    799106 8t8c:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    799107 8t8c:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    799108 8t8c:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    799109 8t8c:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    799110 8t8c:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    799111 8t8c:2b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    799112 8t8c:2c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    799113 8t8c:2d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    799114 8t8c:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    799115 8t8c:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    799116 8t8c:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    799117 8t8c:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 37433044
    799118 8t8c:2g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    799119 8t8c:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    799120 8t8c:2i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    799121 8t8c:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    799122 8t8c:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 37433044
    799123 8t8c:2k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    799124 8t8c:2k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    799125 8t8c:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    799126 8t8c:2m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    799127 8t8c:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    799128 8t8c:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    799129 8t8c:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    799130 8t8c:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    799131 8t8c:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    799132 8t8c:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    799133 8t8c:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    799134 8t8c:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    799135 8t8c:2t (2.6) BS01 rna ? GO:0003723 ... P80380 37433044
    799136 8t8c:2t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    799137 8t8c:2y (2.6) BS01 rna ? GO:0005515 ... P0AD49 37433044
    799138 8t8m:A (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    799139 8t8m:B (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    799140 8t8q:A (2.27) BS01 ZJX 3.1.3.48 GO:0004725 ... Q06124 37774359
    799141 8t8q:B (2.27) BS01 ZJX 3.1.3.48 GO:0004725 ... Q06124 37774359
    799142 8t8u:A (2.01) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799143 8t8u:A (2.01) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    799144 8t8v:A (1.96) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799145 8t8v:A (1.96) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    799146 8t8w:A (2.0) BS01 ATP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799147 8t8x:A (2.59) BS01 ANP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799148 8t8x:A (2.59) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    799149 8t8y:A (2.5) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799150 8t8y:A (2.5) BS02 I3P ? GO:0000828 ... A0A3G4ZNY6 38216735
    799151 8t8z:A (2.6) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799152 8t8z:A (2.6) BS02 ZNU ? GO:0000828 ... A0A3G4ZNY6 38216735
    799153 8t90:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799154 8t90:A (2.3) BS02 ZNZ ? GO:0000828 ... A0A3G4ZNY6 38216735
    799155 8t91:A (2.56) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799156 8t91:A (2.56) BS02 IHP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799157 8t92:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799158 8t92:A (2.3) BS02 XID ? GO:0000828 ... A0A3G4ZNY6 38216735
    799159 8t92:A (2.3) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    799160 8t93:A (1.95) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799161 8t93:A (1.95) BS02 ZNQ ? GO:0000828 ... A0A3G4ZNY6 38216735
    799162 8t94:A (2.11) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    799163 8t94:A (2.11) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    799164 8t94:A (2.11) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    799165 8t95:A (2.61) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799166 8t95:A (2.61) BS02 I4P ? GO:0000828 ... A0A3G4ZNY6 38216735
    799167 8t96:A (2.36) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799168 8t96:A (2.36) BS02 K7V ? GO:0000828 ... A0A3G4ZNY6 38216735
    799169 8t96:A (2.36) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    799170 8t97:A (2.46) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    799171 8t97:A (2.46) BS02 KGN ? GO:0000828 ... A0A3G4ZNY6 38216735
    799172 8t97:A (2.46) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    799173 8t98:A (1.3) BS01 U6J 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0016462 ... O95989 38216735
    799174 8t98:A (1.3) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0016462 ... O95989 38216735
    799175 8t98:A (1.3) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0016462 ... O95989 38216735
    799176 8t99:A (1.5) BS01 ZOW 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0016462 ... O95989 38216735
    799177 8t99:A (1.5) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0016462 ... O95989 38216735
    799178 8t99:A (1.5) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0016462 ... O95989 38216735
    799179 8t9a:B (3.17) BS01 peptide ? GO:0005515 ... Q5T6F0 N/A
    799180 8t9c:A (2.7) BS01 dna ? GO:0005198 ... A0AA49KFV0 N/A
    799181 8t9c:A (2.7) BS02 dna ? GO:0005198 ... A0AA49KFV0 N/A
    799182 8t9d:C (4.66) BS01 peptide N/A GO:0000151 ... O75586 38955181
    799183 8t9f:A (2.6) BS01 dna ? GO:0000786 ... P84233 37595555
    799184 8t9f:A (2.6) BS02 dna ? GO:0000786 ... P84233 37595555
    799185 8t9f:B (2.6) BS01 dna ? GO:0000786 ... P62799 37595555
    799186 8t9f:B (2.6) BS02 dna ? GO:0000786 ... P62799 37595555
    799187 8t9f:C (2.6) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    799188 8t9f:C (2.6) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    799189 8t9f:D (2.6) BS01 dna ? GO:0000786 ... P02281 37595555
    799190 8t9f:E (2.6) BS01 dna ? GO:0000786 ... P84233 37595555
    799191 8t9f:E (2.6) BS02 dna ? GO:0000786 ... P84233 37595555
    799192 8t9f:F (2.6) BS01 dna ? GO:0000786 ... P62799 37595555
    799193 8t9f:F (2.6) BS02 dna ? GO:0000786 ... P62799 37595555
    799194 8t9f:G (2.6) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    799195 8t9f:G (2.6) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    799196 8t9f:H (2.6) BS01 dna ? GO:0000786 ... P02281 37595555
    799197 8t9f:H (2.6) BS02 dna ? GO:0000786 ... P02281 37595555
    799198 8t9f:K (2.6) BS01 SAM 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37595555
    799199 8t9h:A (3.37) BS01 dna ? GO:0000786 ... P84233 36993485
    799200 8t9h:A (3.37) BS02 dna ? GO:0000786 ... P84233 36993485

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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