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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798801 8t8b:1n (2.65) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    798802 8t8b:1n (2.65) BS02 MG ? GO:0003735 ... P0DOY6 37433044
    798803 8t8b:1n (2.65) BS03 ZN ? GO:0003735 ... P0DOY6 37433044
    798804 8t8b:1o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    798805 8t8b:1o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    798806 8t8b:1p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    798807 8t8b:1q (2.65) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    798808 8t8b:1r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    798809 8t8b:1s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    798810 8t8b:1t (2.65) BS01 rna ? GO:0003723 ... P80380 37433044
    798811 8t8b:1t (2.65) BS02 MG ? GO:0003723 ... P80380 37433044
    798812 8t8b:1y (2.65) BS01 rna ? GO:0005515 ... P0AD49 37433044
    798813 8t8b:1y (2.65) BS02 MG ? GO:0005515 ... P0AD49 37433044
    798814 8t8b:20 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    798815 8t8b:20 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    798816 8t8b:20 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    798817 8t8b:21 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    798818 8t8b:22 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    798819 8t8b:23 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    798820 8t8b:23 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    798821 8t8b:23 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    798822 8t8b:24 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    798823 8t8b:24 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    798824 8t8b:25 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    798825 8t8b:25 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    798826 8t8b:25 (2.65) BS03 ZN ? GO:0003735 ... P80339 37433044
    798827 8t8b:26 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    798828 8t8b:26 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    798829 8t8b:27 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    798830 8t8b:27 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    798831 8t8b:28 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    798832 8t8b:29 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    798833 8t8b:29 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    798834 8t8b:2D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    798835 8t8b:2D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    798836 8t8b:2D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    798837 8t8b:2D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044
    798838 8t8b:2D (2.65) BS05 MG ? GO:0002181 ... P60405 37433044
    798839 8t8b:2D (2.65) BS06 MG ? GO:0002181 ... P60405 37433044
    798840 8t8b:2D (2.65) BS07 MG ? GO:0002181 ... P60405 37433044
    798841 8t8b:2D (2.65) BS08 MG ? GO:0002181 ... P60405 37433044
    798842 8t8b:2D (2.65) BS09 MG ? GO:0002181 ... P60405 37433044
    798843 8t8b:2E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    798844 8t8b:2E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    798845 8t8b:2E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    798846 8t8b:2E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    798847 8t8b:2F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    798848 8t8b:2F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    798849 8t8b:2F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    798850 8t8b:2G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    798851 8t8b:2G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    798852 8t8b:2G (2.65) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    798853 8t8b:2H (2.65) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    798854 8t8b:2I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    798855 8t8b:2N (2.65) BS01 rna ? GO:0003729 ... P60488 37433044
    798856 8t8b:2O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    798857 8t8b:2O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    798858 8t8b:2P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    798859 8t8b:2Q (2.65) BS01 rna ? GO:0000049 ... P60489 37433044
    798860 8t8b:2Q (2.65) BS02 rna ? GO:0000049 ... P60489 37433044
    798861 8t8b:2Q (2.65) BS03 MG ? GO:0000049 ... P60489 37433044
    798862 8t8b:2Q (2.65) BS04 MG ? GO:0000049 ... P60489 37433044
    798863 8t8b:2R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    798864 8t8b:2S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    798865 8t8b:2S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    798866 8t8b:2T (2.65) BS01 rna ? GO:0003735 ... P60490 37433044
    798867 8t8b:2T (2.65) BS02 rna ? GO:0003735 ... P60490 37433044
    798868 8t8b:2U (2.65) BS01 rna ? GO:0000027 ... P60491 37433044
    798869 8t8b:2V (2.65) BS01 rna ? GO:0003723 ... P60492 37433044
    798870 8t8b:2V (2.65) BS02 MG ? GO:0003723 ... P60492 37433044
    798871 8t8b:2V (2.65) BS03 MG ? GO:0003723 ... P60492 37433044
    798872 8t8b:2W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    798873 8t8b:2W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    798874 8t8b:2X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    798875 8t8b:2Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    798876 8t8b:2Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    798877 8t8b:2Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    798878 8t8b:2Z (2.65) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    798879 8t8b:2b (2.65) BS01 rna ? GO:0003735 ... P80371 37433044
    798880 8t8b:2c (2.65) BS01 rna ? GO:0003676 ... P80372 37433044
    798881 8t8b:2d (2.65) BS01 rna ? GO:0003723 ... P80373 37433044
    798882 8t8b:2d (2.65) BS02 SF4 ? GO:0003723 ... P80373 37433044
    798883 8t8b:2e (2.65) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    798884 8t8b:2f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    798885 8t8b:2f (2.65) BS02 MG ? GO:0003735 ... Q5SLP8 37433044
    798886 8t8b:2g (2.65) BS01 rna ? GO:0000028 ... P17291 37433044
    798887 8t8b:2h (2.65) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    798888 8t8b:2i (2.65) BS01 rna ? GO:0000049 ... P80374 37433044
    798889 8t8b:2j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    798890 8t8b:2j (2.65) BS02 MG ? GO:0000049 ... Q5SHN7 37433044
    798891 8t8b:2k (2.65) BS01 rna ? GO:0003735 ... P80376 37433044
    798892 8t8b:2k (2.65) BS02 MG ? GO:0003735 ... P80376 37433044
    798893 8t8b:2l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    798894 8t8b:2m (2.65) BS01 rna ? GO:0000049 ... P80377 37433044
    798895 8t8b:2n (2.65) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    798896 8t8b:2n (2.65) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    798897 8t8b:2o (2.65) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    798898 8t8b:2o (2.65) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    798899 8t8b:2p (2.65) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    798900 8t8b:2q (2.65) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    798901 8t8b:2r (2.65) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    798902 8t8b:2s (2.65) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    798903 8t8b:2t (2.65) BS01 rna ? GO:0003723 ... P80380 37433044
    798904 8t8b:2t (2.65) BS02 MG ? GO:0003723 ... P80380 37433044
    798905 8t8b:2y (2.65) BS01 rna ? GO:0005515 ... P0AD49 37433044
    798906 8t8c:10 (2.6) BS01 rna ? GO:0003735 ... P60493 37433044
    798907 8t8c:10 (2.6) BS02 rna ? GO:0003735 ... P60493 37433044
    798908 8t8c:10 (2.6) BS03 MG ? GO:0003735 ... P60493 37433044
    798909 8t8c:10 (2.6) BS04 MG ? GO:0003735 ... P60493 37433044
    798910 8t8c:10 (2.6) BS05 MG ? GO:0003735 ... P60493 37433044
    798911 8t8c:10 (2.6) BS06 MG ? GO:0003735 ... P60493 37433044
    798912 8t8c:11 (2.6) BS01 rna ? GO:0003735 ... P60494 37433044
    798913 8t8c:11 (2.6) BS02 MG ? GO:0003735 ... P60494 37433044
    798914 8t8c:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    798915 8t8c:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    798916 8t8c:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    798917 8t8c:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    798918 8t8c:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    798919 8t8c:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    798920 8t8c:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    798921 8t8c:15 (2.6) BS01 rna ? GO:0003735 ... P80339 37433044
    798922 8t8c:15 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    798923 8t8c:15 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    798924 8t8c:15 (2.6) BS04 MG ? GO:0003735 ... P80339 37433044
    798925 8t8c:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 37433044
    798926 8t8c:16 (2.6) BS01 rna ? GO:0000049 ... P35871 37433044
    798927 8t8c:16 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    798928 8t8c:17 (2.6) BS01 rna ? GO:0003735 ... P80340 37433044
    798929 8t8c:17 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    798930 8t8c:17 (2.6) BS03 MG ? GO:0003735 ... P80340 37433044
    798931 8t8c:17 (2.6) BS04 MG ? GO:0003735 ... P80340 37433044
    798932 8t8c:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    798933 8t8c:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    798934 8t8c:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    798935 8t8c:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    798936 8t8c:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    798937 8t8c:1D (2.6) BS01 rna ? GO:0002181 ... P60405 37433044
    798938 8t8c:1D (2.6) BS02 rna ? GO:0002181 ... P60405 37433044
    798939 8t8c:1D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    798940 8t8c:1D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    798941 8t8c:1D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    798942 8t8c:1D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    798943 8t8c:1D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    798944 8t8c:1D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    798945 8t8c:1D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    798946 8t8c:1D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    798947 8t8c:1D (2.6) BS11 MG ? GO:0002181 ... P60405 37433044
    798948 8t8c:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    798949 8t8c:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    798950 8t8c:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    798951 8t8c:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    798952 8t8c:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    798953 8t8c:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    798954 8t8c:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    798955 8t8c:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    798956 8t8c:1F (2.6) BS04 ARG ? GO:0003735 ... Q5SHN9 37433044
    798957 8t8c:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    798958 8t8c:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    798959 8t8c:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    798960 8t8c:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    798961 8t8c:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    798962 8t8c:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    798963 8t8c:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    798964 8t8c:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 37433044
    798965 8t8c:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 37433044
    798966 8t8c:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    798967 8t8c:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    798968 8t8c:1G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    798969 8t8c:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 37433044
    798970 8t8c:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    798971 8t8c:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    798972 8t8c:1N (2.6) BS01 rna ? GO:0003729 ... P60488 37433044
    798973 8t8c:1N (2.6) BS02 MG ? GO:0003729 ... P60488 37433044
    798974 8t8c:1N (2.6) BS03 MG ? GO:0003729 ... P60488 37433044
    798975 8t8c:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    798976 8t8c:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    798977 8t8c:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 37433044
    798978 8t8c:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    798979 8t8c:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    798980 8t8c:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 37433044
    798981 8t8c:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    798982 8t8c:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    798983 8t8c:1Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    798984 8t8c:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 37433044
    798985 8t8c:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 37433044
    798986 8t8c:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 37433044
    798987 8t8c:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 37433044
    798988 8t8c:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    798989 8t8c:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    798990 8t8c:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    798991 8t8c:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    798992 8t8c:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    798993 8t8c:1T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    798994 8t8c:1T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    798995 8t8c:1U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    798996 8t8c:1U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    798997 8t8c:1U (2.6) BS03 MG ? GO:0000027 ... P60491 37433044
    798998 8t8c:1U (2.6) BS04 MG ? GO:0000027 ... P60491 37433044
    798999 8t8c:1U (2.6) BS05 MG ? GO:0000027 ... P60491 37433044
    799000 8t8c:1U (2.6) BS06 MG ? GO:0000027 ... P60491 37433044
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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