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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798601 8t74:A (1.65) BS01 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    798602 8t74:A (1.65) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798603 8t75:A (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798604 8t75:A (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    798605 8t75:B (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798606 8t75:B (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798607 8t75:C (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798608 8t75:C (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    798609 8t75:D (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798610 8t75:D (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798611 8t75:E (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798612 8t75:E (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    798613 8t75:F (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798614 8t75:F (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798615 8t75:G (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    798616 8t75:G (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    798617 8t75:H (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798618 8t75:H (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    798619 8t76:A (3.42) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798620 8t76:A (3.42) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798621 8t76:A (3.42) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798622 8t77:A (3.25) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798623 8t77:A (3.25) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798624 8t77:A (3.25) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798625 8t78:A (3.02) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798626 8t78:A (3.02) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798627 8t78:A (3.02) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798628 8t79:A (3.04) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798629 8t79:A (3.04) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798630 8t79:A (3.04) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798631 8t7e:A (3.08) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38151585
    798632 8t7e:A (3.08) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38151585
    798633 8t7h:A (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    798634 8t7h:B (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    798635 8t7j:A (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    798636 8t7j:B (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    798637 8t7j:C (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    798638 8t7j:D (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    798639 8t7q:A (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    798640 8t7q:B (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    798641 8t7s:A (3.01) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798642 8t7s:A (3.01) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798643 8t7s:A (3.01) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798644 8t7s:A (3.01) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798645 8t7s:A (3.01) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798646 8t7s:A (3.01) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798647 8t7s:A (3.01) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798648 8t7s:G (3.01) BS01 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798649 8t7s:G (3.01) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798650 8t7s:G (3.01) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    798651 8t7u:A (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798652 8t7u:B (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798653 8t7u:C (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798654 8t7u:D (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798655 8t7u:E (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798656 8t7u:F (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798657 8t7u:G (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798658 8t7v:A (2.25) BS01 ZTA ? GO:0005856 ... O00522 37974623
    798659 8t7v:B (2.25) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    798660 8t7v:B (2.25) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    798661 8t81:A (2.6) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798662 8t81:A (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798663 8t81:A (2.6) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    798664 8t85:A (2.38) BS01 MG ? GO:0000156 ... P0AEV1 37949227
    798665 8t85:A (2.38) BS02 BEF ? GO:0000156 ... P0AEV1 37949227
    798666 8t88:A (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    798667 8t88:A (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    798668 8t88:B (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    798669 8t88:B (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    798670 8t8a:A (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    798671 8t8a:B (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    798672 8t8a:C (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    798673 8t8a:D (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    798674 8t8b:10 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    798675 8t8b:10 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    798676 8t8b:10 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    798677 8t8b:10 (2.65) BS04 MG ? GO:0003735 ... P60493 37433044
    798678 8t8b:10 (2.65) BS05 MG ? GO:0003735 ... P60493 37433044
    798679 8t8b:10 (2.65) BS06 MG ? GO:0003735 ... P60493 37433044
    798680 8t8b:11 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    798681 8t8b:11 (2.65) BS02 MG ? GO:0003735 ... P60494 37433044
    798682 8t8b:12 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    798683 8t8b:13 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    798684 8t8b:13 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    798685 8t8b:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    798686 8t8b:13 (2.65) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    798687 8t8b:14 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    798688 8t8b:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    798689 8t8b:15 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    798690 8t8b:15 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    798691 8t8b:15 (2.65) BS03 MG ? GO:0003735 ... P80339 37433044
    798692 8t8b:15 (2.65) BS04 MG ? GO:0003735 ... P80339 37433044
    798693 8t8b:15 (2.65) BS05 MG ? GO:0003735 ... P80339 37433044
    798694 8t8b:15 (2.65) BS06 ZN ? GO:0003735 ... P80339 37433044
    798695 8t8b:16 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    798696 8t8b:16 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    798697 8t8b:17 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    798698 8t8b:17 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    798699 8t8b:17 (2.65) BS03 MG ? GO:0003735 ... P80340 37433044
    798700 8t8b:18 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    798701 8t8b:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    798702 8t8b:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    798703 8t8b:18 (2.65) BS04 MG ? GO:0003735 ... Q5SKU1 37433044
    798704 8t8b:19 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    798705 8t8b:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    798706 8t8b:1D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    798707 8t8b:1D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    798708 8t8b:1D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    798709 8t8b:1D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044
    798710 8t8b:1D (2.65) BS05 MG ? GO:0002181 ... P60405 37433044
    798711 8t8b:1D (2.65) BS06 MG ? GO:0002181 ... P60405 37433044
    798712 8t8b:1D (2.65) BS07 MG ? GO:0002181 ... P60405 37433044
    798713 8t8b:1D (2.65) BS08 MG ? GO:0002181 ... P60405 37433044
    798714 8t8b:1D (2.65) BS09 MG ? GO:0002181 ... P60405 37433044
    798715 8t8b:1D (2.65) BS10 MG ? GO:0002181 ... P60405 37433044
    798716 8t8b:1D (2.65) BS11 MG ? GO:0002181 ... P60405 37433044
    798717 8t8b:1D (2.65) BS12 MG ? GO:0002181 ... P60405 37433044
    798718 8t8b:1E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    798719 8t8b:1E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    798720 8t8b:1E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    798721 8t8b:1E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    798722 8t8b:1E (2.65) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    798723 8t8b:1F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    798724 8t8b:1F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    798725 8t8b:1F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    798726 8t8b:1F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    798727 8t8b:1F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    798728 8t8b:1F (2.65) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    798729 8t8b:1F (2.65) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    798730 8t8b:1F (2.65) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    798731 8t8b:1F (2.65) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    798732 8t8b:1F (2.65) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    798733 8t8b:1F (2.65) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    798734 8t8b:1F (2.65) BS12 ARG ? GO:0003735 ... Q5SHN9 37433044
    798735 8t8b:1G (2.65) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    798736 8t8b:1G (2.65) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    798737 8t8b:1G (2.65) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    798738 8t8b:1H (2.65) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    798739 8t8b:1I (2.65) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    798740 8t8b:1N (2.65) BS01 rna ? GO:0003729 ... P60488 37433044
    798741 8t8b:1N (2.65) BS02 MG ? GO:0003729 ... P60488 37433044
    798742 8t8b:1N (2.65) BS03 MG ? GO:0003729 ... P60488 37433044
    798743 8t8b:1O (2.65) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    798744 8t8b:1O (2.65) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    798745 8t8b:1P (2.65) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    798746 8t8b:1P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    798747 8t8b:1Q (2.65) BS01 rna ? GO:0000049 ... P60489 37433044
    798748 8t8b:1Q (2.65) BS02 rna ? GO:0000049 ... P60489 37433044
    798749 8t8b:1Q (2.65) BS03 MG ? GO:0000049 ... P60489 37433044
    798750 8t8b:1Q (2.65) BS04 MG ? GO:0000049 ... P60489 37433044
    798751 8t8b:1Q (2.65) BS05 MG ? GO:0000049 ... P60489 37433044
    798752 8t8b:1Q (2.65) BS06 MG ? GO:0000049 ... P60489 37433044
    798753 8t8b:1R (2.65) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    798754 8t8b:1R (2.65) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    798755 8t8b:1R (2.65) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    798756 8t8b:1R (2.65) BS04 MG ? GO:0003735 ... Q9Z9H5 37433044
    798757 8t8b:1S (2.65) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    798758 8t8b:1S (2.65) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    798759 8t8b:1T (2.65) BS01 rna ? GO:0003735 ... P60490 37433044
    798760 8t8b:1T (2.65) BS02 rna ? GO:0003735 ... P60490 37433044
    798761 8t8b:1U (2.65) BS01 rna ? GO:0000027 ... P60491 37433044
    798762 8t8b:1U (2.65) BS02 MG ? GO:0000027 ... P60491 37433044
    798763 8t8b:1U (2.65) BS03 MG ? GO:0000027 ... P60491 37433044
    798764 8t8b:1U (2.65) BS04 MG ? GO:0000027 ... P60491 37433044
    798765 8t8b:1U (2.65) BS05 MG ? GO:0000027 ... P60491 37433044
    798766 8t8b:1U (2.65) BS06 MG ? GO:0000027 ... P60491 37433044
    798767 8t8b:1V (2.65) BS01 rna ? GO:0003723 ... P60492 37433044
    798768 8t8b:1V (2.65) BS02 MG ? GO:0003723 ... P60492 37433044
    798769 8t8b:1V (2.65) BS03 MG ? GO:0003723 ... P60492 37433044
    798770 8t8b:1V (2.65) BS04 MG ? GO:0003723 ... P60492 37433044
    798771 8t8b:1V (2.65) BS05 MG ? GO:0003723 ... P60492 37433044
    798772 8t8b:1W (2.65) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    798773 8t8b:1W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    798774 8t8b:1W (2.65) BS03 MG ? GO:0003735 ... Q5SHP3 37433044
    798775 8t8b:1X (2.65) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    798776 8t8b:1X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 37433044
    798777 8t8b:1Y (2.65) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    798778 8t8b:1Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    798779 8t8b:1Z (2.65) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    798780 8t8b:1Z (2.65) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    798781 8t8b:1b (2.65) BS01 rna ? GO:0003735 ... P80371 37433044
    798782 8t8b:1b (2.65) BS02 MG ? GO:0003735 ... P80371 37433044
    798783 8t8b:1c (2.65) BS01 rna ? GO:0003676 ... P80372 37433044
    798784 8t8b:1d (2.65) BS01 rna ? GO:0003723 ... P80373 37433044
    798785 8t8b:1d (2.65) BS02 MG ? GO:0003723 ... P80373 37433044
    798786 8t8b:1d (2.65) BS03 SF4 ? GO:0003723 ... P80373 37433044
    798787 8t8b:1e (2.65) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    798788 8t8b:1e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    798789 8t8b:1f (2.65) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    798790 8t8b:1g (2.65) BS01 rna ? GO:0000028 ... P17291 37433044
    798791 8t8b:1h (2.65) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    798792 8t8b:1i (2.65) BS01 rna ? GO:0000049 ... P80374 37433044
    798793 8t8b:1j (2.65) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    798794 8t8b:1k (2.65) BS01 rna ? GO:0003735 ... P80376 37433044
    798795 8t8b:1k (2.65) BS02 MG ? GO:0003735 ... P80376 37433044
    798796 8t8b:1l (2.65) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    798797 8t8b:1l (2.65) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    798798 8t8b:1m (2.65) BS01 rna ? GO:0000049 ... P80377 37433044
    798799 8t8b:1m (2.65) BS02 rna ? GO:0000049 ... P80377 37433044
    798800 8t8b:1m (2.65) BS03 MG ? GO:0000049 ... P80377 37433044
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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