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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    798001 8szj:B (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798002 8szj:C (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798003 8szj:D (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798004 8szj:E (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798005 8szj:F (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798006 8szj:G (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798007 8szj:H (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798008 8szj:I (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798009 8szj:J (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798010 8szj:K (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798011 8szj:L (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    798012 8szo:A (2.5) BS01 MN N/A GO:0030246 ... N/A 28693997
    798013 8szo:A (2.5) BS02 CA N/A GO:0030246 ... N/A 28693997
    798014 8szo:A (2.5) BS03 MMA N/A GO:0030246 ... N/A 28693997
    798015 8szp:A (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    798016 8szp:A (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    798017 8szp:B (2.62) BS01 ADP 3.6.4.13 GO:0003676 ... Q08211 37860960
    798018 8szp:B (2.62) BS02 MG 3.6.4.13 GO:0003676 ... Q08211 37860960
    798019 8szq:A (2.711) BS01 ADP 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    798020 8szq:A (2.711) BS02 MG 3.6.4.13 GO:0003676 ... M3WPI7 37860960
    798021 8szr:A (2.97) BS01 ADP 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    798022 8szr:A (2.97) BS02 MG 3.6.4.13 GO:0003676 ... A0A8I3RTG4 37860960
    798023 8szs:A (2.38) BS01 GDP 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    798024 8szs:A (2.38) BS02 MG 3.6.4.13 GO:0003676 ... M3WPI7 37625785
    798025 8szt:A (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    798026 8szt:B (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    798027 8szt:C (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    798028 8szt:D (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    798029 8szu:A (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    798030 8szu:A (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    798031 8szu:A (1.75) BS03 ZN ? GO:0000122 ... R8YPJ7 37624144
    798032 8szu:A (1.75) BS04 X4U ? GO:0000122 ... R8YPJ7 37624144
    798033 8szu:B (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    798034 8szu:B (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    798035 8szu:B (1.75) BS03 X4U ? GO:0000122 ... R8YPJ7 37624144
    798036 8szu:B (1.75) BS04 ZN ? GO:0000122 ... R8YPJ7 37624144
    798037 8szv:A (2.2) BS01 X1D ? GO:0003677 ... O75469 37729916
    798038 8t03:A (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798039 8t03:A (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    798040 8t03:A (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    798041 8t03:B (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798042 8t03:B (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    798043 8t03:B (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    798044 8t04:A (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798045 8t04:A (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    798046 8t04:A (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    798047 8t04:B (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798048 8t04:B (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    798049 8t04:B (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    798050 8t05:A (3.22) BS01 ZN N/A GO:0016020 ... N/A 37770716
    798051 8t05:A (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    798052 8t05:A (3.22) BS03 LBN N/A GO:0016020 ... N/A 37770716
    798053 8t05:B (3.22) BS01 ZN N/A GO:0016020 ... N/A 37770716
    798054 8t05:B (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    798055 8t05:B (3.22) BS03 LBN N/A GO:0016020 ... N/A 37770716
    798056 8t06:A (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798057 8t06:B (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798058 8t07:A (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798059 8t07:B (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    798060 8t09:A (2.15) BS01 XHZ ? GO:0005856 ... O00522 37974623
    798061 8t09:B (2.15) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    798062 8t09:B (2.15) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    798063 8t0c:A (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    798064 8t0c:B (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    798065 8t0c:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    798066 8t0c:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    798067 8t0e:A (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    798068 8t0e:B (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    798069 8t0e:C (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    798070 8t0e:D (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    798071 8t0k:b (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798072 8t0k:c (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798073 8t0k:c (3.58) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    798074 8t0k:f (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798075 8t0k:f (3.58) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    798076 8t0k:g (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798077 8t0n:A (1.86) BS01 Y0B 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    798078 8t0n:A (1.86) BS02 NAD 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    798079 8t0r:b (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798080 8t0r:c (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798081 8t0r:c (3.97) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    798082 8t0r:f (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798083 8t0r:f (3.97) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    798084 8t0r:g (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    798085 8t0s:A (1.95) BS01 peptide 2.3.2.23 GO:0004842 ... P60604 N/A
    798086 8t0t:A (1.75) BS01 Y6E 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    798087 8t0y:A (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    798088 8t0y:B (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    798089 8t0y:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    798090 8t0y:C (3.5) BS02 8IJ ? GO:0000122 ... O35433 38698206
    798091 8t0y:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    798092 8t0z:A (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798093 8t0z:B (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798094 8t0z:C (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798095 8t0z:D (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798096 8t0z:E (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798097 8t0z:F (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798098 8t0z:G (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798099 8t0z:H (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798100 8t0z:I (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798101 8t0z:J (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798102 8t0z:K (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798103 8t0z:L (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    798104 8t10:A (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    798105 8t10:B (3.7) BS01 8IJ ? GO:0000122 ... O35433 38698206
    798106 8t10:B (3.7) BS02 NKN ? GO:0000122 ... O35433 38698206
    798107 8t10:C (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    798108 8t10:D (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    798109 8t10:D (3.7) BS02 8IJ ? GO:0000122 ... O35433 38698206
    798110 8t12:B (3.34) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    798111 8t12:B (3.34) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    798112 8t13:B (3.45) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    798113 8t13:B (3.45) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 38195857
    798114 8t14:A (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798115 8t14:B (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798116 8t14:C (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798117 8t14:D (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798118 8t14:E (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798119 8t14:F (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798120 8t14:G (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    798121 8t1b:A (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798122 8t1b:A (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798123 8t1b:A (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798124 8t1b:A (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798125 8t1b:A (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798126 8t1b:A (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798127 8t1b:A (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798128 8t1b:A (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798129 8t1b:A (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798130 8t1b:A (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798131 8t1b:A (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798132 8t1b:B (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798133 8t1b:B (3.0) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798134 8t1b:B (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798135 8t1b:B (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798136 8t1b:B (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798137 8t1b:B (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798138 8t1b:B (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798139 8t1b:B (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798140 8t1b:B (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798141 8t1b:B (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798142 8t1b:B (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798143 8t1b:B (3.0) BS12 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798144 8t1b:C (3.0) BS01 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798145 8t1b:C (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798146 8t1b:C (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798147 8t1b:C (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798148 8t1b:C (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798149 8t1b:C (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798150 8t1b:C (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798151 8t1b:C (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798152 8t1b:C (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798153 8t1b:C (3.0) BS10 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798154 8t1b:C (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798155 8t1b:D (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798156 8t1b:D (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798157 8t1b:D (3.0) BS03 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798158 8t1b:D (3.0) BS04 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798159 8t1b:D (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798160 8t1b:D (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798161 8t1b:D (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798162 8t1b:D (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798163 8t1b:D (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798164 8t1b:D (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798165 8t1b:D (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798166 8t1c:E (3.49) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 37353478
    798167 8t1d:A (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    798168 8t1d:B (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    798169 8t1d:C (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    798170 8t1d:D (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    798171 8t1e:A (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798172 8t1e:A (2.77) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798173 8t1e:A (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798174 8t1e:A (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798175 8t1e:A (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798176 8t1e:A (2.77) BS06 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798177 8t1e:A (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798178 8t1e:A (2.77) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798179 8t1e:B (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798180 8t1e:B (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798181 8t1e:B (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798182 8t1e:B (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798183 8t1e:B (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798184 8t1e:B (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798185 8t1e:B (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798186 8t1e:B (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798187 8t1e:B (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798188 8t1e:C (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798189 8t1e:C (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798190 8t1e:C (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798191 8t1e:C (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798192 8t1e:C (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798193 8t1e:C (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798194 8t1e:C (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798195 8t1e:C (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798196 8t1e:C (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798197 8t1e:D (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798198 8t1e:D (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    798199 8t1e:D (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    798200 8t1e:D (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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