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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    797801 8sxz:g (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    797802 8sy0:A (2.1) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797803 8sy0:B (2.1) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797804 8sy5:I (2.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    797805 8sy5:J (2.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797806 8sy5:J (2.7) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797807 8sy5:J (2.7) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797808 8sy5:J (2.7) BS04 X0F 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797809 8sy6:I (3.28) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    797810 8sy6:I (3.28) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    797811 8sy6:I (3.28) BS03 UTP 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    797812 8sy6:J (3.28) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797813 8sy6:J (3.28) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797814 8sy6:J (3.28) BS03 DG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797815 8sy6:J (3.28) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797816 8sy6:J (3.28) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797817 8sy6:J (3.28) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797818 8sy6:J (3.28) BS07 UTP 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797819 8sy7:I (2.65) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    797820 8sy7:I (2.65) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    797821 8sy7:I (2.65) BS03 X0O 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    797822 8sy7:J (2.65) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797823 8sy7:J (2.65) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797824 8sy7:J (2.65) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797825 8sy7:J (2.65) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797826 8sy7:J (2.65) BS05 X0O 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    797827 8sy9:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797828 8sy9:A (2.2) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797829 8sy9:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797830 8sy9:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797831 8sya:A (2.3) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797832 8sya:B (2.3) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797833 8sya:B (2.3) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797834 8syb:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797835 8syb:A (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797836 8syb:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797837 8syb:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797838 8syc:A (2.7) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 38284310
    797839 8syc:A (2.7) BS02 X5W 3.1.4.17 GO:0004114 ... Q13370 38284310
    797840 8syc:D (2.7) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 38284310
    797841 8syc:D (2.7) BS02 X5W 3.1.4.17 GO:0004114 ... Q13370 38284310
    797842 8syd:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797843 8syd:A (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797844 8syd:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797845 8syd:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797846 8sye:A (1.9) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797847 8sye:A (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797848 8sye:B (1.9) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797849 8sye:B (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797850 8syh:A (2.0) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797851 8syh:A (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797852 8syh:B (2.0) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797853 8syh:B (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    797854 8syi:C (2.94) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    797855 8syi:C (2.94) BS02 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    797856 8syi:C (2.94) BS03 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    797857 8syi:D (2.94) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    797858 8syi:D (2.94) BS02 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    797859 8syi:D (2.94) BS03 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    797860 8syi:D (2.94) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    797861 8syi:D (2.94) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    797862 8syi:G (2.94) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    797863 8syi:Z (2.94) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    797864 8syi:Z (2.94) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    797865 8syl:1 (2.9) BS01 rna ? GO:0000027 ... P0A7M6 37537169
    797866 8syl:2 (2.9) BS01 rna ? GO:0000027 ... P0AG51 37537169
    797867 8syl:2 (2.9) BS02 rna ? GO:0000027 ... P0AG51 37537169
    797868 8syl:3 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 37537169
    797869 8syl:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 37537169
    797870 8syl:4 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 37537169
    797871 8syl:5 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 37537169
    797872 8syl:6 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 37537169
    797873 8syl:7 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 37537169
    797874 8syl:8 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 37537169
    797875 8syl:8 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 37537169
    797876 8syl:C (2.9) BS01 rna ? GO:0000027 ... P60422 37537169
    797877 8syl:C (2.9) BS02 rna ? GO:0000027 ... P60422 37537169
    797878 8syl:C (2.9) BS03 MG ? GO:0000027 ... P60422 37537169
    797879 8syl:D (2.9) BS01 rna ? GO:0000027 ... P60438 37537169
    797880 8syl:E (2.9) BS01 rna ? GO:0001070 ... P60723 37537169
    797881 8syl:F (2.9) BS01 rna ? GO:0000027 ... P62399 37537169
    797882 8syl:F (2.9) BS02 rna ? GO:0000027 ... P62399 37537169
    797883 8syl:F (2.9) BS03 rna ? GO:0000027 ... P62399 37537169
    797884 8syl:G (2.9) BS01 rna ? GO:0000027 ... P0AG55 37537169
    797885 8syl:H (2.9) BS01 rna ? GO:0002181 ... P0A7R1 37537169
    797886 8syl:L (2.9) BS01 rna ? GO:0002181 ... P0AA10 37537169
    797887 8syl:M (2.9) BS01 rna ? GO:0002181 ... P0ADY3 37537169
    797888 8syl:M (2.9) BS02 rna ? GO:0002181 ... P0ADY3 37537169
    797889 8syl:N (2.9) BS01 rna ? GO:0002181 ... P02413 37537169
    797890 8syl:O (2.9) BS01 rna ? GO:0000027 ... P0ADY7 37537169
    797891 8syl:O (2.9) BS02 rna ? GO:0000027 ... P0ADY7 37537169
    797892 8syl:O (2.9) BS03 rna ? GO:0000027 ... P0ADY7 37537169
    797893 8syl:P (2.9) BS01 rna ? GO:0000027 ... P0AG44 37537169
    797894 8syl:Q (2.9) BS01 rna ? GO:0002181 ... P0C018 37537169
    797895 8syl:Q (2.9) BS02 rna ? GO:0002181 ... P0C018 37537169
    797896 8syl:R (2.9) BS01 rna ? GO:0000027 ... P0A7K6 37537169
    797897 8syl:R (2.9) BS02 rna ? GO:0000027 ... P0A7K6 37537169
    797898 8syl:S (2.9) BS01 rna ? GO:0000027 ... P0A7L3 37537169
    797899 8syl:T (2.9) BS01 rna ? GO:0002181 ... P0AG48 37537169
    797900 8syl:U (2.9) BS01 rna ? GO:0002181 ... P61175 37537169
    797901 8syl:V (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 37537169
    797902 8syl:W (2.9) BS01 rna ? GO:0000027 ... P60624 37537169
    797903 8syl:X (2.9) BS01 rna ? GO:0000027 ... P68919 37537169
    797904 8syl:Y (2.9) BS01 rna ? GO:0000027 ... P0A7L8 37537169
    797905 8syl:Y (2.9) BS02 rna ? GO:0000027 ... P0A7L8 37537169
    797906 8syl:Y (2.9) BS03 rna ? GO:0000027 ... P0A7L8 37537169
    797907 8syl:Z (2.9) BS01 rna ? GO:0000027 ... P0A7M2 37537169
    797908 8syl:b (2.9) BS01 rna ? GO:0000028 ... P0A7V0 37537169
    797909 8syl:c (2.9) BS01 rna ? GO:0000028 ... P0A7V3 37537169
    797910 8syl:d (2.9) BS01 rna ? GO:0000028 ... P0A7V8 37537169
    797911 8syl:e (2.9) BS01 rna ? GO:0000028 ... P0A7W1 37537169
    797912 8syl:f (2.9) BS01 rna ? GO:0002181 ... P02358 37537169
    797913 8syl:g (2.9) BS01 rna ? GO:0003723 ... P02359 37537169
    797914 8syl:g (2.9) BS02 rna ? GO:0003723 ... P02359 37537169
    797915 8syl:h (2.9) BS01 rna ? GO:0000028 ... P0A7W7 37537169
    797916 8syl:i (2.9) BS01 rna ? GO:0000049 ... P0A7X3 37537169
    797917 8syl:i (2.9) BS02 rna ? GO:0000049 ... P0A7X3 37537169
    797918 8syl:j (2.9) BS01 rna ? GO:0000049 ... P0A7R5 37537169
    797919 8syl:k (2.9) BS01 rna ? GO:0002181 ... P0A7R9 37537169
    797920 8syl:l (2.9) BS01 rna ? GO:0000049 ... P0A7S3 37537169
    797921 8syl:l (2.9) BS02 rna ? GO:0000049 ... P0A7S3 37537169
    797922 8syl:m (2.9) BS01 rna ? GO:0000049 ... P0A7S9 37537169
    797923 8syl:m (2.9) BS02 rna ? GO:0000049 ... P0A7S9 37537169
    797924 8syl:n (2.9) BS01 rna ? GO:0000028 ... P0AG59 37537169
    797925 8syl:o (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 37537169
    797926 8syl:o (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 37537169
    797927 8syl:p (2.9) BS01 rna ? GO:0000028 ... P0A7T3 37537169
    797928 8syl:q (2.9) BS01 rna ? GO:0000028 ... P0AG63 37537169
    797929 8syl:r (2.9) BS01 rna ? GO:0002181 ... P0A7T7 37537169
    797930 8syl:s (2.9) BS01 rna ? GO:0000028 ... P0A7U3 37537169
    797931 8syl:t (2.9) BS01 rna ? GO:0000028 ... P0A7U7 37537169
    797932 8syl:u (2.9) BS01 rna ? GO:0000028 ... P68679 37537169
    797933 8syp:A (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    797934 8syp:A (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    797935 8syp:B (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    797936 8syp:B (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    797937 8syp:C (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    797938 8syp:C (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    797939 8syp:D (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    797940 8syp:D (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    797941 8syp:E (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    797942 8syp:E (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    797943 8syp:F (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    797944 8syp:F (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    797945 8syp:G (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    797946 8syp:G (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    797947 8syp:H (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    797948 8syp:H (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    797949 8sz3:A (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    797950 8sz3:B (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    797951 8sz6:A (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    797952 8sz6:B (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    797953 8sz6:B (1.65) BS02 XII 1.1.1.88 GO:0004420 ... P13702 38327055
    797954 8sz6:B (1.65) BS03 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    797955 8sz6:B (1.65) BS04 SO4 1.1.1.88 GO:0004420 ... P13702 38327055
    797956 8sz8:b (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    797957 8sz8:b (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    797958 8sz8:c (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    797959 8sz8:c (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    797960 8sz8:f (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    797961 8sz8:f (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    797962 8sz8:g (3.55) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    797963 8sz8:g (3.55) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    797964 8sza:A (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    797965 8sza:B (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    797966 8sza:C (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    797967 8sza:D (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    797968 8sza:E (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    797969 8sza:F (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    797970 8szc:C (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    797971 8szc:C (3.06) BS02 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    797972 8szc:D (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    797973 8szd:A (1.25) BS01 MG 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    797974 8sze:A (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    797975 8sze:B (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    797976 8szf:A (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    797977 8szf:A (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    797978 8szf:A (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    797979 8szf:B (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    797980 8szf:B (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    797981 8szf:B (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    797982 8szg:A (3.6) BS01 YP4 ? GO:0004930 ... P41180 38326620
    797983 8szg:A (3.6) BS02 CA ? GO:0004930 ... P41180 38326620
    797984 8szg:A (3.6) BS03 TRP ? GO:0004930 ... P41180 38326620
    797985 8szg:B (3.6) BS01 CLR ? GO:0004930 ... P41180 38326620
    797986 8szg:B (3.6) BS02 TRP ? GO:0004930 ... P41180 38326620
    797987 8szg:B (3.6) BS03 YP4 ? GO:0004930 ... P41180 38326620
    797988 8szh:A (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    797989 8szh:A (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    797990 8szh:A (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    797991 8szh:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    797992 8szh:B (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    797993 8szh:B (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    797994 8szi:A (3.5) BS01 CA ? GO:0004930 ... P41180 38326620
    797995 8szi:A (3.5) BS02 TRP ? GO:0004930 ... P41180 38326620
    797996 8szi:A (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    797997 8szi:B (3.5) BS01 CLR ? GO:0004930 ... P41180 38326620
    797998 8szi:B (3.5) BS02 CA ? GO:0004930 ... P41180 38326620
    797999 8szi:B (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    798000 8szj:A (3.35) BS01 GLN 3.5.1.2 GO:0004359 ... O94925 38438397
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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