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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    795801 8sml:A (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    795802 8sml:D (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    795803 8sml:D (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    795804 8sml:D (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    795805 8smn:A (3.2) BS01 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    795806 8smn:A (3.2) BS02 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    795807 8smn:A (3.2) BS03 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    795808 8smo:A (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795809 8smo:C (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795810 8smo:E (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795811 8smo:G (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795812 8smo:I (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795813 8smo:K (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795814 8smo:M (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795815 8smo:O (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    795816 8smp:A (3.4) BS01 UDP 2.4.1.212 GO:0016020 ... P13563 N/A
    795817 8smr:C (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    795818 8smr:C (2.7) BS02 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    795819 8smr:D (2.7) BS01 I7Y ? GO:0005886 ... Q9HVY5 37751552
    795820 8smr:D (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    795821 8smr:D (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    795822 8smr:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    795823 8smr:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    795824 8smr:E (2.7) BS02 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    795825 8smr:E (2.7) BS03 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    795826 8smr:F (2.7) BS01 CA ? GO:0004129 ... Q9I3G4 37751552
    795827 8smr:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    795828 8smr:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G5 37751552
    795829 8smr:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G5 37751552
    795830 8smr:I (2.7) BS01 HEM ? GO:0005886 ... Q9HVY5 37751552
    795831 8smr:I (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    795832 8smr:I (2.7) BS03 U10 ? GO:0005886 ... Q9HVY5 37751552
    795833 8smr:I (2.7) BS04 I7Y ? GO:0005886 ... Q9HVY5 37751552
    795834 8smr:J (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    795835 8smr:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    795836 8smr:K (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    795837 8smr:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    795838 8smr:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    795839 8smr:M (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    795840 8smr:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    795841 8smr:N (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    795842 8smr:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    795843 8smr:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    795844 8smr:Z (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    795845 8smr:Z (2.7) BS02 I7Y 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    795846 8smr:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    795847 8sms:A (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    795848 8sms:B (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    795849 8smu:A (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    795850 8smu:B (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    795851 8smu:C (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    795852 8smu:C (2.45) BS02 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    795853 8smu:D (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    795854 8smw:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    795855 8smw:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    795856 8smw:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    795857 8smw:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    795858 8smw:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    795859 8smw:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    795860 8smw:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    795861 8smw:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    795862 8smw:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    795863 8smw:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    795864 8smw:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    795865 8smw:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    795866 8smw:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    795867 8smw:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    795868 8smw:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    795869 8smx:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795870 8smx:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795871 8smx:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795872 8smx:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    795873 8smx:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795874 8smx:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795875 8smx:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795876 8smx:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    795877 8smx:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795878 8smx:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795879 8smx:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795880 8smx:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    795881 8smx:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795882 8smx:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795883 8smx:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795884 8smx:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    795885 8smy:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795886 8smy:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795887 8smy:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795888 8smy:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795889 8smy:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795890 8smy:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795891 8smy:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    795892 8smy:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795893 8smy:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795894 8smy:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795895 8smy:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    795896 8smy:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795897 8smy:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795898 8smy:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795899 8smy:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    795900 8smz:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795901 8smz:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795902 8smz:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795903 8smz:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    795904 8smz:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795905 8smz:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795906 8smz:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795907 8smz:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    795908 8smz:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795909 8smz:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795910 8smz:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795911 8smz:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    795912 8smz:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795913 8smz:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795914 8smz:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795915 8sn0:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795916 8sn0:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795917 8sn0:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795918 8sn0:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    795919 8sn0:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795920 8sn0:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795921 8sn0:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795922 8sn0:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    795923 8sn0:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    795924 8sn0:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    795925 8sn0:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    795926 8sn0:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    795927 8sn0:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    795928 8sn0:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    795929 8sn0:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    795930 8sn0:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    795931 8sn1:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    795932 8sn1:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    795933 8sn1:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    795934 8sn1:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    795935 8sn1:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    795936 8sn1:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    795937 8sn1:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    795938 8sn1:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    795939 8sn1:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    795940 8sn1:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    795941 8sn1:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    795942 8sn1:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    795943 8sn1:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    795944 8sn1:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    795945 8sn1:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    795946 8sn1:H (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    795947 8sn2:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    795948 8sn2:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    795949 8sn2:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    795950 8sn2:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    795951 8sn2:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    795952 8sn2:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    795953 8sn2:D (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    795954 8sn2:D (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    795955 8sn2:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    795956 8sn2:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    795957 8sn2:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    795958 8sn2:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    795959 8sn2:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    795960 8sn2:H (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    795961 8sn2:H (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    795962 8sn3:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    795963 8sn3:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    795964 8sn3:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    795965 8sn3:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    795966 8sn3:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    795967 8sn3:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    795968 8sn3:D (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    795969 8sn3:D (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    795970 8sn3:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    795971 8sn3:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    795972 8sn3:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    795973 8sn3:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    795974 8sn3:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    795975 8sn3:H (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    795976 8sn3:H (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    795977 8sn3:L (3.8) BS01 dna 2.3.2.23
    2.3.2.24    		 GO:0000122 ... P61077 38242129
    795978 8sn4:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    795979 8sn4:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    795980 8sn4:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    795981 8sn4:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    795982 8sn4:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    795983 8sn4:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    795984 8sn4:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    795985 8sn4:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    795986 8sn4:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    795987 8sn4:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    795988 8sn4:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    795989 8sn4:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    795990 8sn4:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    795991 8sn4:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    795992 8sn4:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    795993 8sn4:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    795994 8sn5:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    795995 8sn5:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    795996 8sn5:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    795997 8sn5:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    795998 8sn5:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    795999 8sn5:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    796000 8sn5:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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