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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    794801 8sgl:Q (2.9) BS02 MG ? GO:0002199 ... P50990 37852256
    794802 8sgl:Q (2.9) BS03 AF3 ? GO:0002199 ... P50990 37852256
    794803 8sgl:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    794804 8sgl:Z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794805 8sgl:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    794806 8sgl:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794807 8sgl:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    794808 8sgl:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794809 8sgl:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    794810 8sgl:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794811 8sgl:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    794812 8sgl:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794813 8sgl:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    794814 8sgl:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794815 8sgl:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794816 8sgl:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794817 8sgl:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    794818 8sgl:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794819 8sgl:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    794820 8sgl:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794821 8sgo:A (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    794822 8sgo:B (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    794823 8sgo:C (2.65) BS01 ABU ? GO:0004888 ... P47870 37607940
    794824 8sgo:C (2.65) BS02 Q3G ? GO:0004888 ... P47870 37607940
    794825 8sgo:D (2.65) BS01 ABU ? GO:0004888 ... P14867 37607940
    794826 8sgo:E (2.65) BS01 MAN ? GO:0004888 ... P18507 37607940
    794827 8sgo:E (2.65) BS02 A8W ? GO:0004888 ... P18507 37607940
    794828 8sgp:A (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794829 8sgp:A (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794830 8sgp:B (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794831 8sgp:B (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794832 8sgp:C (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794833 8sgp:C (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794834 8sgp:D (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794835 8sgp:D (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    794836 8sgq:A (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    794837 8sgq:B (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    794838 8sgq:D (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    794839 8sgq:E (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    794840 8sgq:G (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    794841 8sgq:H (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794842 8sgq:Q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    794843 8sgq:Z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    794844 8sgq:a (3.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    794845 8sgq:b (3.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    794846 8sgq:d (3.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    794847 8sgq:e (3.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    794848 8sgq:g (3.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    794849 8sgq:h (3.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794850 8sgq:q (3.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    794851 8sgq:z (3.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    794852 8sgr:A (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794853 8sgr:A (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794854 8sgr:B (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794855 8sgr:B (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794856 8sgr:C (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794857 8sgr:C (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794858 8sgr:D (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794859 8sgr:D (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    794860 8sgs:A (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794861 8sgs:A (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    794862 8sgs:A (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794863 8sgs:B (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794864 8sgs:B (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794865 8sgs:B (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    794866 8sgs:C (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794867 8sgs:C (3.15) BS02 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    794868 8sgs:C (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794869 8sgs:D (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794870 8sgs:D (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    794871 8sgs:D (3.15) BS03 COA 1.3.8.1 GO:0003995 ... P16219 37839702
    794872 8sgt:A (3.6) BS01 CA ? GO:0005432 ... P32418 37794011
    794873 8sgt:A (3.6) BS02 CA ? GO:0005432 ... P32418 37794011
    794874 8sgt:A (3.6) BS03 CA ? GO:0005432 ... P32418 37794011
    794875 8sgt:A (3.6) BS04 CA ? GO:0005432 ... P32418 37794011
    794876 8sgt:A (3.6) BS05 CA ? GO:0005432 ... P32418 37794011
    794877 8sgt:A (3.6) BS06 CA ? GO:0005432 ... P32418 37794011
    794878 8sgv:A (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    794879 8sgv:A (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    794880 8sgv:B (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    794881 8sgv:B (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    794882 8sgv:C (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    794883 8sgv:C (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    794884 8sgv:D (2.58) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 37839702
    794885 8sgv:D (2.58) BS02 NDP 1.11.1.6 GO:0000302 ... P04040 37839702
    794886 8sgw:C (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    794887 8sgw:C (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    794888 8sgw:C (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    794889 8sgw:C (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    794890 8sgw:C (2.5) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    794891 8sgw:C (2.5) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    794892 8sgw:C (2.5) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    794893 8sgw:C (2.5) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    794894 8sgw:C (2.5) BS09 CL ? GO:0005886 ... I3L8V6 38184688
    794895 8sgw:C (2.5) BS10 AV0 ? GO:0005886 ... I3L8V6 38184688
    794896 8sgw:C (2.5) BS11 LBN ? GO:0005886 ... I3L8V6 38184688
    794897 8sgw:D (2.5) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    794898 8sgw:D (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    794899 8sgw:D (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    794900 8sgw:D (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    794901 8sgw:D (2.5) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    794902 8sgw:D (2.5) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    794903 8sgw:D (2.5) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    794904 8sgw:D (2.5) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    794905 8sgw:D (2.5) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    794906 8sgw:D (2.5) BS10 CL ? GO:0005886 ... I3L8V6 38184688
    794907 8sgw:D (2.5) BS11 AV0 ? GO:0005886 ... I3L8V6 38184688
    794908 8sgx:C (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794909 8sgx:E (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794910 8sgx:F (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794911 8sgx:G (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794912 8sgx:H (10.3) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794913 8sgx:S (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794914 8sgx:V (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794915 8sgx:X (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794916 8sgx:Z (10.3) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794917 8sgy:B (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794918 8sgy:C (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794919 8sgy:D (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794920 8sgy:E (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794921 8sgy:G (8.62) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794922 8sgy:S (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794923 8sgy:V (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794924 8sgy:Y (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794925 8sgy:Z (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794926 8sgz:B (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794927 8sgz:C (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794928 8sgz:D (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794929 8sgz:E (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794930 8sgz:F (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794931 8sgz:G (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794932 8sgz:H (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    794933 8sgz:S (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794934 8sgz:V (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794935 8sgz:X (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794936 8sgz:Y (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794937 8sgz:Z (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    794938 8sh0:A (2.16) BS01 dna ? GO:0000723 ... Q9NUX5 37590346
    794939 8sh1:A (2.6) BS01 dna ? GO:0000723 ... Q9NUX5 37590346
    794940 8sh1:A (2.6) BS02 dna ? GO:0000723 ... Q9NUX5 37590346
    794941 8sh3:C (2.8) BS01 AV0 ? GO:0005886 ... I3L8V6 38184688
    794942 8sh3:C (2.8) BS02 IOD ? GO:0005886 ... I3L8V6 38184688
    794943 8sh3:C (2.8) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    794944 8sh3:C (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    794945 8sh3:C (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    794946 8sh3:C (2.8) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    794947 8sh3:C (2.8) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    794948 8sh3:C (2.8) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    794949 8sh3:C (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    794950 8sh3:D (2.8) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    794951 8sh3:D (2.8) BS02 AV0 ? GO:0005886 ... I3L8V6 38184688
    794952 8sh3:D (2.8) BS03 IOD ? GO:0005886 ... I3L8V6 38184688
    794953 8sh3:D (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    794954 8sh3:D (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    794955 8sh3:D (2.8) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    794956 8sh3:D (2.8) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    794957 8sh3:D (2.8) BS08 CLR ? GO:0005886 ... I3L8V6 38184688
    794958 8sh3:D (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    794959 8sh7:A (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 N/A
    794960 8sh7:B (2.8) BS01 GDP ? GO:0000226 ... P68371 N/A
    794961 8sh9:A (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    794962 8sh9:A (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794963 8sh9:B (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    794964 8sh9:B (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794965 8sh9:D (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    794966 8sh9:D (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794967 8sh9:E (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    794968 8sh9:E (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794969 8sh9:G (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    794970 8sh9:G (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794971 8sh9:H (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794972 8sh9:H (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794973 8sh9:Q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    794974 8sh9:Q (2.7) BS02 AF3 ? GO:0002199 ... P50990 37852256
    794975 8sh9:Z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    794976 8sh9:Z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794977 8sh9:a (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    794978 8sh9:a (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794979 8sh9:b (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    794980 8sh9:b (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794981 8sh9:d (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    794982 8sh9:d (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    794983 8sh9:e (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    794984 8sh9:e (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    794985 8sh9:g (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    794986 8sh9:g (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    794987 8sh9:h (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    794988 8sh9:h (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    794989 8sh9:q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    794990 8sh9:q (2.7) BS02 MG ? GO:0002199 ... P50990 37852256
    794991 8sh9:q (2.7) BS03 AF3 ? GO:0002199 ... P50990 37852256
    794992 8sh9:z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    794993 8sh9:z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    794994 8sha:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    794995 8sha:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    794996 8sha:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    794997 8sha:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    794998 8sha:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    794999 8sha:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    795000 8sha:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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