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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    794001 8sdk:A (2.1) BS01 CA 3.4.21.64 GO:0004252 ... P06873 37223996
    794002 8sdr:A (1.35) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    794003 8sds:A (1.63) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    794004 8sdt:A (1.38) BS01 ZXM 3.5.2.6 GO:0008800 ... P24735 37850746
    794005 8sdv:A (1.42) BS01 ZXM 3.5.2.6 GO:0008800 ... P24735 37850746
    794006 8sdw:A (1.75) BS01 G3D 3.6.5.2 GO:0000139 ... P84077 38574162
    794007 8sdz:A (2.86) BS01 RTO ? GO:0005452 ... O35956 37845412
    794008 8se5:A (1.43) BS01 ZW7 ? GO:0045954 ... P26718 37778428
    794009 8se5:B (1.43) BS01 ZW7 ? GO:0045954 ... P26718 37778428
    794010 8se6:A (1.36) BS01 ZWA ? GO:0045954 ... P26718 37778428
    794011 8se6:B (1.36) BS01 ZWA ? GO:0045954 ... P26718 37778428
    794012 8se9:A (3.2) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    794013 8sea:A (3.4) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    794014 8seb:A (3.24) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    794015 8sen:A (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    794016 8sen:B (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    794017 8sen:C (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    794018 8sen:D (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    794019 8seo:A (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    794020 8seo:A (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    794021 8seo:B (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    794022 8seo:B (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    794023 8seo:C (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    794024 8seo:C (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    794025 8seo:D (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    794026 8seo:D (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    794027 8sep:A (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    794028 8sep:A (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    794029 8sep:B (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    794030 8sep:B (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    794031 8sep:C (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    794032 8sep:C (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    794033 8sep:D (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    794034 8sep:D (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    794035 8seq:A (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    794036 8seq:A (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    794037 8seq:B (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    794038 8seq:B (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    794039 8seq:C (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    794040 8seq:C (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    794041 8seq:D (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    794042 8seq:D (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    794043 8ser:A (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    794044 8ser:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794045 8ser:B (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    794046 8ser:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794047 8ser:C (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    794048 8ser:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794049 8ser:D (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    794050 8ser:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794051 8ses:A (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    794052 8ses:A (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    794053 8ses:B (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    794054 8ses:B (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    794055 8ses:C (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    794056 8ses:C (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    794057 8ses:D (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    794058 8ses:D (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    794059 8set:A (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    794060 8set:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794061 8set:B (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    794062 8set:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794063 8set:C (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    794064 8set:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794065 8set:D (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    794066 8set:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    794067 8seu:A (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    794068 8seu:B (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    794069 8seu:C (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    794070 8seu:D (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    794071 8sev:A (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    794072 8sev:A (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    794073 8sev:B (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    794074 8sev:B (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    794075 8sev:C (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    794076 8sev:C (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    794077 8sev:D (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    794078 8sev:D (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    794079 8sew:A (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    794080 8sew:A (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    794081 8sew:B (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    794082 8sew:B (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    794083 8sew:C (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    794084 8sew:C (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    794085 8sew:D (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    794086 8sew:D (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    794087 8sex:A (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    794088 8sex:A (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    794089 8sex:B (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    794090 8sex:B (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    794091 8sex:C (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    794092 8sex:C (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    794093 8sex:D (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    794094 8sex:D (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    794095 8sey:A (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    794096 8sey:A (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    794097 8sey:B (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    794098 8sey:B (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    794099 8sey:C (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    794100 8sey:C (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    794101 8sey:D (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    794102 8sey:D (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    794103 8sez:A (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    794104 8sez:A (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    794105 8sez:B (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    794106 8sez:B (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    794107 8sez:C (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    794108 8sez:C (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    794109 8sez:D (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    794110 8sez:D (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    794111 8sf0:A (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    794112 8sf0:A (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    794113 8sf0:B (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    794114 8sf0:B (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    794115 8sf0:C (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    794116 8sf0:C (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    794117 8sf0:D (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    794118 8sf0:D (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    794119 8sf1:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    794120 8sf2:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794121 8sf2:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    794122 8sf3:A (1.7) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    794123 8sf3:A (1.7) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    794124 8sf7:AA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794125 8sf7:AB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    794126 8sf7:AB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    794127 8sf7:AC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794128 8sf7:AD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794129 8sf7:AE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794130 8sf7:AF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794131 8sf7:AG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794132 8sf7:AH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794133 8sf7:AI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794134 8sf7:AJ (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    794135 8sf7:AJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    794136 8sf7:AK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794137 8sf7:AL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794138 8sf7:AM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794139 8sf7:AN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794140 8sf7:BA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794141 8sf7:BB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794142 8sf7:BC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794143 8sf7:BD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794144 8sf7:BE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794145 8sf7:BF (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    794146 8sf7:BF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    794147 8sf7:BG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794148 8sf7:BH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794149 8sf7:BI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794150 8sf7:BJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794151 8sf7:BK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794152 8sf7:BL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794153 8sf7:BM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794154 8sf7:BN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794155 8sf7:CA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794156 8sf7:CB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794157 8sf7:CC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794158 8sf7:CD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794159 8sf7:CE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794160 8sf7:CF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794161 8sf7:CG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794162 8sf7:CH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794163 8sf7:CH (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794164 8sf7:CI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794165 8sf7:CJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794166 8sf7:CK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794167 8sf7:CL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794168 8sf7:CL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794169 8sf7:CM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794170 8sf7:CN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794171 8sf7:DA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794172 8sf7:DB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794173 8sf7:DB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794174 8sf7:DC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794175 8sf7:DD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794176 8sf7:DD (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794177 8sf7:DE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794178 8sf7:DF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794179 8sf7:DG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794180 8sf7:DH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794181 8sf7:DI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794182 8sf7:DJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794183 8sf7:DK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794184 8sf7:DL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794185 8sf7:DM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794186 8sf7:DN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794187 8sf7:EA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794188 8sf7:EB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794189 8sf7:EC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794190 8sf7:ED (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794191 8sf7:ED (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794192 8sf7:EE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794193 8sf7:EF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794194 8sf7:EF (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    794195 8sf7:EG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794196 8sf7:EH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794197 8sf7:EI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    794198 8sf7:EJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    794199 8sf7:EK (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 38598282
    794200 8sf7:EK (4.1) BS02 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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