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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    789401 8qu5:K (2.42) BS01 rna N/A GO:0003723 ... Q9BYD1 38969660
    789402 8qu5:L (2.42) BS01 rna N/A GO:0003723 ... Q6P1L8 38969660
    789403 8qu5:M (2.42) BS01 rna N/A GO:0003723 ... Q9P015 38969660
    789404 8qu5:N (2.42) BS01 peptide N/A GO:0003735 ... Q9NX20 38969660
    789405 8qu5:N (2.42) BS02 rna N/A GO:0003735 ... Q9NX20 38969660
    789406 8qu5:O (2.42) BS01 rna N/A GO:0003735 ... Q9NRX2 38969660
    789407 8qu5:P (2.42) BS01 rna N/A GO:0003723 ... Q9H0U6 38969660
    789408 8qu5:P (2.42) BS02 rna N/A GO:0003723 ... Q9H0U6 38969660
    789409 8qu5:Q (2.42) BS01 rna N/A GO:0003735 ... P49406 38969660
    789410 8qu5:R (2.42) BS01 rna N/A GO:0003723 ... Q9BYC9 38969660
    789411 8qu5:S (2.42) BS01 rna N/A GO:0003723 ... Q7Z2W9 38969660
    789412 8qu5:T (2.42) BS01 rna N/A GO:0003723 ... Q9NWU5 38969660
    789413 8qu5:U (2.42) BS01 rna N/A GO:0001650 ... Q16540 38969660
    789414 8qu5:V (2.42) BS01 rna N/A GO:0005739 ... Q96A35 38969660
    789415 8qu5:W (2.42) BS01 rna N/A GO:0003723 ... Q9P0M9 38969660
    789416 8qu5:X (2.42) BS01 rna N/A GO:0003723 ... Q13084 38969660
    789417 8qu5:Y (2.42) BS01 rna N/A GO:0003674 ... Q9HD33 38969660
    789418 8qu5:Z (2.42) BS01 rna N/A GO:0005739 ... Q8TCC3 38969660
    789419 8qu5:a (2.42) BS01 rna N/A GO:0003723 ... Q9Y6G3 38969660
    789420 8qu5:b (2.42) BS01 rna N/A GO:0003723 ... Q8N983 38969660
    789421 8qu5:c (2.42) BS01 rna N/A GO:0003723 ... Q9H9J2 38969660
    789422 8qu5:d (2.42) BS01 rna N/A GO:0003723 ... Q9BRJ2 38969660
    789423 8qu5:f (2.42) BS01 rna N/A GO:0005515 ... Q96GC5 38969660
    789424 8qu5:f (2.42) BS02 rna N/A GO:0005515 ... Q96GC5 38969660
    789425 8qu5:g (2.42) BS01 rna N/A GO:0003735 ... Q13405 38969660
    789426 8qu5:i (2.42) BS01 rna N/A GO:0003735 ... Q4U2R6 38969660
    789427 8qu5:j (2.42) BS01 rna N/A GO:0003735 ... Q86TS9 38969660
    789428 8qu5:o (2.42) BS01 rna N/A GO:0003735 ... Q9BQC6 38969660
    789429 8qu5:r (2.42) BS01 rna N/A GO:0003735 ... Q9NVS2 38969660
    789430 8qu5:s (2.42) BS01 rna N/A GO:0003723 ... Q9NP92 38969660
    789431 8qu5:u (2.42) BS01 rna N/A GO:0005515 ... Q96EH3 38969660
    789432 8qu5:v (2.42) BS01 PNS N/A GO:0000266 ... L0R8F8 38969660
    789433 8qu5:w (2.42) BS01 PNS N/A GO:0000035 ... O14561 38969660
    789434 8qu8:A (3.5) BS01 WYL ? GO:0000122 ... P40337 N/A
    789435 8qu8:E (3.5) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 N/A
    789436 8qu8:E (3.5) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 N/A
    789437 8qu8:F (3.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    789438 8qu8:F (3.5) BS02 WYL 3.6.5.2 GO:0003924 ... P01116 N/A
    789439 8qu9:A (2.88) BS01 peptide 1.16.3.1 GO:0004322 ... P02794 38714719
    789440 8qu9:A (2.88) BS02 FE 1.16.3.1 GO:0004322 ... P02794 38714719
    789441 8qu9:A (2.88) BS03 FE 1.16.3.1 GO:0004322 ... P02794 38714719
    789442 8qub:A (1.63) BS01 WVZ ? GO:0016032 ... P12493 38581280
    789443 8quc:A (2.9) BS01 WY9 ? GO:0001508 ... P48547 38514618
    789444 8quc:A (2.9) BS02 Y01 ? GO:0001508 ... P48547 38514618
    789445 8quc:A (2.9) BS03 Y01 ? GO:0001508 ... P48547 38514618
    789446 8quc:A (2.9) BS04 WY9 ? GO:0001508 ... P48547 38514618
    789447 8quc:B (2.9) BS01 WY9 ? GO:0001508 ... P48547 38514618
    789448 8quc:B (2.9) BS02 WY9 ? GO:0001508 ... P48547 38514618
    789449 8quc:B (2.9) BS03 Y01 ? GO:0001508 ... P48547 38514618
    789450 8quc:B (2.9) BS04 Y01 ? GO:0001508 ... P48547 38514618
    789451 8quc:C (2.9) BS01 WY9 ? GO:0001508 ... P48547 38514618
    789452 8quc:C (2.9) BS02 Y01 ? GO:0001508 ... P48547 38514618
    789453 8quc:C (2.9) BS03 WY9 ? GO:0001508 ... P48547 38514618
    789454 8quc:C (2.9) BS04 Y01 ? GO:0001508 ... P48547 38514618
    789455 8quc:D (2.9) BS01 Y01 ? GO:0001508 ... P48547 38514618
    789456 8quc:D (2.9) BS02 WY9 ? GO:0001508 ... P48547 38514618
    789457 8quc:D (2.9) BS03 Y01 ? GO:0001508 ... P48547 38514618
    789458 8quc:D (2.9) BS04 WY9 ? GO:0001508 ... P48547 38514618
    789459 8qud:A (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    789460 8qud:A (2.5) BS02 ZN ? GO:0001508 ... P48547 38514618
    789461 8qud:A (2.5) BS03 Y01 ? GO:0001508 ... P48547 38514618
    789462 8qud:B (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    789463 8qud:B (2.5) BS02 WY0 ? GO:0001508 ... P48547 38514618
    789464 8qud:B (2.5) BS03 ZN ? GO:0001508 ... P48547 38514618
    789465 8qud:B (2.5) BS04 Y01 ? GO:0001508 ... P48547 38514618
    789466 8qud:C (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    789467 8qud:C (2.5) BS02 WY0 ? GO:0001508 ... P48547 38514618
    789468 8qud:C (2.5) BS03 ZN ? GO:0001508 ... P48547 38514618
    789469 8qud:C (2.5) BS04 Y01 ? GO:0001508 ... P48547 38514618
    789470 8qud:D (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    789471 8qud:D (2.5) BS02 ZN ? GO:0001508 ... P48547 38514618
    789472 8qud:D (2.5) BS03 Y01 ? GO:0001508 ... P48547 38514618
    789473 8qud:D (2.5) BS04 WY0 ? GO:0001508 ... P48547 38514618
    789474 8qug:A (1.56) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    789475 8qug:A (1.56) BS02 WYU 3.6.5.2 GO:0003924 ... P01116 N/A
    789476 8quh:A (1.55) BS01 AJ2 ? GO:0016032 ... P12493 38581280
    789477 8qui:A (1.69) BS01 XXL ? GO:0016032 ... P12493 38581280
    789478 8quj:A (1.63) BS01 WWR ? GO:0016032 ... P12493 38581280
    789479 8quk:A (1.38) BS01 WVU ? GO:0016032 ... P12493 38581280
    789480 8qul:A (1.67) BS01 3IP ? GO:0016032 ... P12493 38581280
    789481 8quu:A (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789482 8quu:B (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789483 8quv:A (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789484 8quv:B (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789485 8quw:A (2.02) BS01 WZR ? GO:0016032 ... P12493 38581280
    789486 8qux:A (2.3) BS01 S0I ? GO:0016032 ... P12493 38581280
    789487 8quy:A (1.88) BS01 X0L ? GO:0016032 ... P12493 38581280
    789488 8quz:A (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789489 8quz:B (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789490 8qv1:A (2.2) BS01 X0H ? GO:0016032 ... P12493 38581280
    789491 8qv2:a (9.2) BS01 peptide ? GO:0000930 ... N/A 38609662
    789492 8qv2:a (9.2) BS02 GDP ? GO:0000930 ... N/A 38609662
    789493 8qv2:b (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789494 8qv2:c (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789495 8qv2:d (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789496 8qv2:e (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789497 8qv2:f (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789498 8qv2:g (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789499 8qv2:h (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789500 8qv2:i (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789501 8qv2:j (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789502 8qv2:k (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789503 8qv2:l (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789504 8qv2:m (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789505 8qv2:n (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789506 8qv3:c (8.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789507 8qv3:d (8.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    789508 8qv4:A (2.7) BS01 WZX ? GO:0016032 ... P12493 38581280
    789509 8qv7:A (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    789510 8qv7:B (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    789511 8qv7:C (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    789512 8qv7:D (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    789513 8qv9:A (1.76) BS01 WZL ? GO:0016032 ... P12493 38581280
    789514 8qva:A (2.0) BS01 WZ9 ? GO:0016032 ... P12493 38581280
    789515 8qvb:A (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789516 8qvb:B (2.7) BS01 HEM N/A GO:0046872 ... B8HNS6 38846772
    789517 8qve:A (1.7) BS01 FAD ? GO:0000166 ... A0A2I9D0D5 38508304
    789518 8qvo:A (1.96) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    789519 8qvo:A (1.96) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    789520 8qvo:A (1.96) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    789521 8qvo:A (1.96) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    789522 8qvo:A (1.96) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    789523 8qvo:A (1.96) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    789524 8qvu:A (2.24) BS01 WYL 3.6.5.2 GO:0000139 ... P01116 N/A
    789525 8qvu:A (2.24) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 N/A
    789526 8qvu:A (2.24) BS03 MG 3.6.5.2 GO:0000139 ... P01116 N/A
    789527 8qvu:B (2.24) BS01 WYL ? GO:0000122 ... P40337 N/A
    789528 8qvu:E (2.24) BS01 WYL 3.6.5.2 GO:0000139 ... P01116 N/A
    789529 8qvu:E (2.24) BS02 GDP 3.6.5.2 GO:0000139 ... P01116 N/A
    789530 8qvu:E (2.24) BS03 MG 3.6.5.2 GO:0000139 ... P01116 N/A
    789531 8qvu:F (2.24) BS01 WYL ? GO:0000122 ... P40337 N/A
    789532 8qw6:A (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    789533 8qw6:A (2.2) BS02 X4R 3.6.5.2 GO:0003924 ... P01116 N/A
    789534 8qw6:E (2.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    789535 8qw6:E (2.2) BS02 X4R 3.6.5.2 GO:0003924 ... P01116 N/A
    789536 8qw6:E (2.2) BS03 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    789537 8qw7:A (2.36) BS01 X53 3.6.5.2 GO:0003924 ... P01116 N/A
    789538 8qw7:A (2.36) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    789539 8qw7:A (2.36) BS03 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    789540 8qw7:E (2.36) BS01 X53 3.6.5.2 GO:0003924 ... P01116 N/A
    789541 8qw7:E (2.36) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    789542 8qw7:E (2.36) BS03 MG 3.6.5.2 GO:0003924 ... P01116 N/A
    789543 8qws:A (1.6) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    789544 8qws:A (1.6) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    789545 8qws:B (1.6) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    789546 8qws:B (1.6) BS02 MG 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    789547 8qwx:A (1.6) BS01 HEM N/A GO:0000302 ... A0A8H4QK56 38824538
    789548 8qwx:A (1.6) BS02 CA N/A GO:0000302 ... A0A8H4QK56 38824538
    789549 8qwx:A (1.6) BS03 CA N/A GO:0000302 ... A0A8H4QK56 38824538
    789550 8qwy:A (2.6) BS01 X59 2.7.11.1 GO:0004672 ... P68400 N/A
    789551 8qwy:B (2.6) BS01 X59 2.7.11.1 GO:0004672 ... P68400 N/A
    789552 8qwz:A (2.6) BS01 X5E 2.7.11.1 GO:0004672 ... P68400 N/A
    789553 8qwz:B (2.6) BS01 X5E 2.7.11.1 GO:0004672 ... P68400 N/A
    789554 8qx0:A (1.247) BS01 MN N/A GO:0000302 ... A0A8H4QK56 38824538
    789555 8qx0:A (1.247) BS02 HEM N/A GO:0000302 ... A0A8H4QK56 38824538
    789556 8qx0:A (1.247) BS03 CA N/A GO:0000302 ... A0A8H4QK56 38824538
    789557 8qx0:A (1.247) BS04 CA N/A GO:0000302 ... A0A8H4QK56 38824538
    789558 8qx2:A (2.1) BS01 ILR ? GO:0004888 ... Q8WSF8 38667766
    789559 8qx2:B (2.1) BS01 ILR ? GO:0004888 ... Q8WSF8 38667766
    789560 8qx2:C (2.1) BS01 ILR ? GO:0004888 ... Q8WSF8 38667766
    789561 8qx2:D (2.1) BS01 ILR ? GO:0004888 ... Q8WSF8 38667766
    789562 8qx2:E (2.1) BS01 ILR ? GO:0004888 ... Q8WSF8 38667766
    789563 8qx5:A (1.9) BS01 45D ? GO:0009579 ... Q8YMJ2 38521321
    789564 8qx5:B (1.9) BS01 45D ? GO:0009579 ... Q8YMJ2 38521321
    789565 8qxd:21 (9.6) BS01 rna ? GO:0000243 ... P62314 38778104
    789566 8qxd:22 (9.6) BS01 rna ? GO:0000245 ... P62316 38778104
    789567 8qxd:23 (9.6) BS01 rna ? GO:0000243 ... P62318 38778104
    789568 8qxd:2B (9.6) BS01 rna ? GO:0000398 ... P08579 38778104
    789569 8qxd:2e (9.6) BS01 rna ? GO:0000245 ... P62304 38778104
    789570 8qxd:2f (9.6) BS01 rna ? GO:0000387 ... P62306 38778104
    789571 8qxd:2g (9.6) BS01 rna ? GO:0000245 ... P62308 38778104
    789572 8qxd:41 (9.6) BS01 rna ? GO:0000243 ... P62314 38778104
    789573 8qxd:42 (9.6) BS01 rna ? GO:0000245 ... P62316 38778104
    789574 8qxd:42 (9.6) BS02 peptide ? GO:0000245 ... P62316 38778104
    789575 8qxd:43 (9.6) BS01 rna ? GO:0000243 ... P62318 38778104
    789576 8qxd:4e (9.6) BS01 rna ? GO:0000245 ... P62304 38778104
    789577 8qxd:4f (9.6) BS01 rna ? GO:0000387 ... P62306 38778104
    789578 8qxd:4g (9.6) BS01 rna ? GO:0000245 ... P62308 38778104
    789579 8qxd:52 (9.6) BS01 rna ? GO:0000245 ... P62316 38778104
    789580 8qxd:5f (9.6) BS01 rna ? GO:0000387 ... P62306 38778104
    789581 8qxd:5g (9.6) BS01 rna ? GO:0000245 ... P62308 38778104
    789582 8qxd:63 (9.6) BS01 rna ? GO:0000398 ... P62310 38778104
    789583 8qxd:68 (9.6) BS01 rna ? GO:0000398 ... O95777 38778104
    789584 8qxd:8 (9.6) BS01 rna ? GO:0000245 ... Q15428 38778104
    789585 8qxd:A (9.6) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    789586 8qxd:A (9.6) BS02 peptide ? GO:0000244 ... Q6P2Q9 38778104
    789587 8qxd:B1 (9.6) BS01 rna ? GO:0000245 ... O75533 38778104
    789588 8qxd:B1 (9.6) BS02 rna ? GO:0000245 ... O75533 38778104
    789589 8qxd:B2 (9.6) BS01 rna ? GO:0000398 ... Q13435 38778104
    789590 8qxd:B6 (9.6) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    789591 8qxd:D (9.6) BS01 rna ? GO:0000245 ... P83876 38778104
    789592 8qxd:J (9.6) BS01 rna ? GO:0000244 ... O43395 38778104
    789593 8qxd:L (9.6) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    789594 8qxd:L (9.6) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    789595 8qxd:M (9.6) BS01 rna ? GO:0000398 ... P55769 38778104
    789596 8qxd:M (9.6) BS02 rna ? GO:0000398 ... P55769 38778104
    789597 8qxd:R (9.6) BS01 rna ? GO:0000398 ... Q9BTD8 38778104
    789598 8qxd:R (9.6) BS02 rna ? GO:0000398 ... Q9BTD8 38778104
    789599 8qxd:S (9.6) BS01 rna ? GO:0000387 ... O43290 38778104
    789600 8qxd:S (9.6) BS02 peptide ? GO:0000387 ... O43290 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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