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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 1diq:B (2.75) BS02 PCR 1.17.9.1 GO:0003824 ... P09788 10623531
    7402 1diq:C (2.75) BS01 HEC 1.17.99.1 GO:0009055 ... P09787 10623531
    7403 1diq:D (2.75) BS01 HEC 1.17.99.1 GO:0009055 ... P09787 10623531
    7404 1dir:A (2.6) BS01 NAD 1.5.1.34 GO:0001889 ... P11348 15299357
    7405 1dir:B (2.6) BS01 NAD 1.5.1.34 GO:0001889 ... P11348 15299357
    7406 1dir:C (2.6) BS01 NAD 1.5.1.34 GO:0001889 ... P11348 15299357
    7407 1dir:D (2.6) BS01 NAD 1.5.1.34 GO:0001889 ... P11348 15299357
    7408 1dis:A (-1.00) BS01 BDM 1.5.1.3 GO:0004146 ... P00381 7547901 PDBbind: -logKd/Ki=11.00, Ki<0.01nM
    7409 1dit:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 8868478
    7410 1dit:H (2.3) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 8868478
    7411 1diu:A (-1.00) BS01 BDM 1.5.1.3 GO:0004146 ... P00381 7547901
    7412 1diw:A (2.0) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 10722735
    7413 1diy:A (3.0) BS01 COH 1.14.99.1 GO:0001516 ... P05979 10988074
    7414 1diy:A (3.0) BS02 ACD 1.14.99.1 GO:0001516 ... P05979 10988074
    7415 1diz:A (2.5) BS01 dna 3.2.2.21 GO:0003824 ... P04395 10675345
    7416 1diz:A (2.5) BS02 dna 3.2.2.21 GO:0003824 ... P04395 10675345
    7417 1diz:B (2.5) BS01 dna 3.2.2.21 GO:0003824 ... P04395 10675345
    7418 1diz:B (2.5) BS02 dna 3.2.2.21 GO:0003824 ... P04395 10675345
    7419 1dj1:A (1.93) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 10722697
    7420 1dj2:A (2.9) BS01 GDP 6.3.4.4 GO:0000166 ... Q96529 10669609
    7421 1dj2:B (2.9) BS01 GDP 6.3.4.4 GO:0000166 ... Q96529 10669609
    7422 1dj3:A (3.0) BS01 GDP 6.3.4.4 GO:0000166 ... O24396 10669609
    7423 1dj3:B (3.0) BS01 GDP 6.3.4.4 GO:0000166 ... O24396 10669609
    7424 1dj5:A (1.93) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 10722697
    7425 1dj5:A (1.93) BS02 HGU 1.11.1.5 GO:0004601 ... P00431 10722697
    7426 1dj7:A (1.6) BS01 SF4 1.8.7.2 GO:0005515 ... Q55389 10649999
    7427 1dj9:A (2.0) BS01 KAM 2.3.1.47 GO:0003824 ... P12998 10642176
    7428 1dje:A (1.71) BS01 PLP 2.3.1.47 GO:0003824 ... P12998 10642176
    7429 1djg:A (2.6) BS01 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7430 1djg:A (2.6) BS02 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7431 1djg:A (2.6) BS03 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7432 1djg:A (2.6) BS04 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7433 1djg:B (2.6) BS01 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7434 1djg:B (2.6) BS02 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7435 1djg:B (2.6) BS03 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7436 1djg:B (2.6) BS04 LA 3.1.4.11 GO:0004435 ... P10688 9062102
    7437 1djh:A (2.5) BS01 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7438 1djh:A (2.5) BS02 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7439 1djh:A (2.5) BS03 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7440 1djh:B (2.5) BS01 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7441 1djh:B (2.5) BS02 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7442 1djh:B (2.5) BS03 BA 3.1.4.11 GO:0004435 ... P10688 9062102
    7443 1dji:A (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7444 1dji:A (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7445 1dji:A (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7446 1dji:B (2.5) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7447 1dji:B (2.5) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7448 1dji:B (2.5) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9062102
    7449 1djn:A (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7450 1djn:A (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7451 1djn:A (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7452 1djn:B (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7453 1djn:B (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7454 1djn:B (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7455 1djo:A (2.0) BS01 CAB 3.5.1.38 GO:0004067 ... P10182 10684596
    7456 1djo:B (2.0) BS01 CAB 3.5.1.38 GO:0004067 ... P10182 10684596
    7457 1djp:A (1.9) BS01 DO2 3.5.1.38 GO:0004067 ... P10182 10684596
    7458 1djp:B (1.9) BS01 DO2 3.5.1.38 GO:0004067 ... P10182 10684596
    7459 1djq:A (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7460 1djq:A (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7461 1djq:A (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7462 1djq:B (2.2) BS01 SF4 1.5.8.2 GO:0009056 ... P16099 10869173
    7463 1djq:B (2.2) BS02 FMN 1.5.8.2 GO:0009056 ... P16099 10869173
    7464 1djq:B (2.2) BS03 ADP 1.5.8.2 GO:0009056 ... P16099 10869173
    7465 1djr:D (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7466 1djr:E (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7467 1djr:F (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7468 1djr:G (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7469 1djr:H (1.3) BS01 GLA ? GO:0005576 ... P32890 10930826
    7470 1djs:B (2.4) BS01 SO4 ? GO:0008083 ... P05230 10618369
    7471 1djs:B (2.4) BS02 SO4 ? GO:0008083 ... P05230 10618369
    7472 1djs:B (2.4) BS03 SO4 ? GO:0008083 ... P05230 10618369
    7473 1djs:B (2.4) BS04 SO4 ? GO:0008083 ... P05230 10618369
    7474 1dju:A (2.1) BS01 PLP 2.6.1.- GO:0003824 ... O59096 10671523
    7475 1dju:B (2.1) BS01 PLP 2.6.1.- GO:0003824 ... O59096 10671523
    7476 1djw:A (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7477 1djw:A (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7478 1djw:A (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7479 1djw:A (2.45) BS04 CIP 3.1.4.11 GO:0004435 ... P10688 9048554
    7480 1djw:B (2.45) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7481 1djw:B (2.45) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7482 1djw:B (2.45) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7483 1djw:B (2.45) BS04 CIP 3.1.4.11 GO:0004435 ... P10688 9048554
    7484 1djx:A (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7485 1djx:A (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7486 1djx:A (2.3) BS03 I3P 3.1.4.11 GO:0004435 ... P10688 9048554 MOAD: Kd=1.7uM
    7487 1djx:B (2.3) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7488 1djx:B (2.3) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7489 1djx:B (2.3) BS03 I3P 3.1.4.11 GO:0004435 ... P10688 9048554 MOAD: Kd=1.7uM
    7490 1djy:A (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7491 1djy:A (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7492 1djy:A (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7493 1djy:A (2.8) BS04 I2P 3.1.4.11 GO:0004435 ... P10688 9048554
    7494 1djy:B (2.8) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7495 1djy:B (2.8) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7496 1djy:B (2.8) BS03 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7497 1djy:B (2.8) BS04 I2P 3.1.4.11 GO:0004435 ... P10688 9048554
    7498 1djz:A (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7499 1djz:A (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7500 1djz:A (2.95) BS03 IP2 3.1.4.11 GO:0004435 ... P10688 9048554
    7501 1djz:B (2.95) BS01 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7502 1djz:B (2.95) BS02 CA 3.1.4.11 GO:0004435 ... P10688 9048554
    7503 1djz:B (2.95) BS03 IP2 3.1.4.11 GO:0004435 ... P10688 9048554
    7504 1dk0:A (1.77) BS01 HEM ? GO:0005515 ... Q54450 10966573
    7505 1dk0:B (1.77) BS01 HEM ? GO:0005515 ... Q54450 10966573
    7506 1dk1:A (2.8) BS01 rna ? GO:0003735 ... P80378 10742169
    7507 1dk4:A (2.6) BS01 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7508 1dk4:A (2.6) BS02 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7509 1dk4:B (2.6) BS01 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7510 1dk4:B (2.6) BS02 ZN 3.1.3.11
    3.1.3.25
    GO:0006020 ... Q57573 11062561
    7511 1dka:A (2.6) BS01 K 4.1.1.64 GO:0008453 ... P16932 8342040
    7512 1dka:A (2.6) BS02 PLP 4.1.1.64 GO:0008453 ... P16932 8342040
    7513 1dkd:A (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7514 1dkd:B (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7515 1dkd:C (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7516 1dkd:D (2.1) BS01 peptide 5.6.1.7 GO:0042026 ... P0A6F5 10619429
    7517 1dke:A (2.1) BS01 HEM ? GO:0004601 ... P69905 10794410
    7518 1dke:B (2.1) BS01 HEM ? GO:0004601 ... P68871 10794410
    7519 1dke:C (2.1) BS01 HEM ? GO:0004601 ... P69905 10794410
    7520 1dke:D (2.1) BS01 HEM ? GO:0004601 ... P68871 10794410
    7521 1dkf:B (2.5) BS01 BMS ? GO:0003677 ... P10276 10882070
    7522 1dkh:A (3.2) BS01 HEM ? GO:0005515 ... Q54450 10966573
    7523 1dko:A (2.38) BS01 WO4 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 10655611
    7524 1dkp:A (2.28) BS01 IHP 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 10655611
    7525 1dkq:A (2.05) BS01 IHP 3.1.3.-
    3.6.1.-
    GO:0003924 ... P07102 10655611
    7526 1dks:A (3.2) BS01 PO4 ? GO:0000307 ... P61024 7791211
    7527 1dks:B (3.2) BS01 PO4 ? GO:0000307 ... P61024 7791211
    7528 1dkt:A (2.9) BS01 V7O ? GO:0000307 ... P61024 7791211
    7529 1dkt:B (2.9) BS01 V7O ? GO:0000307 ... P61024 7791211
    7530 1dku:A (2.2) BS01 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7531 1dku:A (2.2) BS02 ABM 2.7.6.1 GO:0000287 ... P14193 10742175
    7532 1dku:A (2.2) BS03 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7533 1dku:B (2.2) BS01 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7534 1dku:B (2.2) BS02 AP2 2.7.6.1 GO:0000287 ... P14193 10742175
    7535 1dku:B (2.2) BS03 ABM 2.7.6.1 GO:0000287 ... P14193 10742175
    7536 1dkx:A (2.0) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7537 1dky:A (2.8) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7538 1dky:B (2.8) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7539 1dkz:A (2.0) BS01 peptide ? GO:0005524 ... P0A6Y8 8658133
    7540 1dl5:A (1.8) BS01 SAH 2.1.1.77 GO:0004719 ... Q56308 11080641
    7541 1dl5:B (1.8) BS01 SAH 2.1.1.77 GO:0004719 ... Q56308 11080641
    7542 1dl6:A (-1.00) BS01 ZN 2.3.1.48 GO:0006352 ... Q00403 11045620
    7543 1dl7:H (2.35) BS01 NCH ? GO:0002250 ... P01820 10859335 PDBbind: -logKd/Ki=6.49, Kd=0.32uM
    7544 1dl7:L (2.35) BS01 NCH ? GO:0002250 ... P01724 10859335 MOAD: Kd=0.32uM
    PDBbind: -logKd/Ki=6.49, Kd=0.32uM
    7545 1dlh:A (2.8) BS01 peptide ? GO:0006955 ... P01903 8145819
    7546 1dlh:B (2.8) BS01 peptide ? GO:0006955 ... P01911 8145819
    7547 1dlh:D (2.8) BS01 peptide ? GO:0006955 ... P01903 8145819
    7548 1dlh:E (2.8) BS01 peptide ? GO:0006955 ... P01911 8145819
    7549 1dli:A (2.31) BS01 NAD 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7550 1dli:A (2.31) BS02 UDX 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7551 1dlj:A (1.8) BS01 NAI 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7552 1dlj:A (1.8) BS02 UGA 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    7553 1dlk:B (2.14) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7554 1dlk:B (2.14) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7555 1dlk:B (2.14) BS03 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7556 1dlk:D (2.14) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7557 1dlk:D (2.14) BS02 peptide 3.4.21.1 GO:0004252 ... P00766 10713514
    7558 1dll:A (1.8) BS01 BGC 3.4.24.68 GO:0005576 ... P04958 10722735
    7559 1dll:A (1.8) BS02 GAL 3.4.24.68 GO:0005576 ... P04958 10722735
    7560 1dlm:A (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7561 1dlm:B (2.0) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7562 1dlq:A (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7563 1dlq:B (2.3) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7564 1dlr:A (2.3) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 7890613
    7565 1dlr:A (2.3) BS02 MXA 1.5.1.3 GO:0000900 ... P00374 7890613 MOAD: Ki=16.4nM
    BindingDB: IC50=0.61nM, Ki=0.025nM
    7566 1dls:A (2.3) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 7890613
    7567 1dls:A (2.3) BS02 MTX 1.5.1.3 GO:0000900 ... P00374 7890613 MOAD: Ki=10.9nM
    BindingDB: IC50=22nM, Kd=0.194984nM, Ki=4420nM, EC50=13.3nM
    7568 1dlt:A (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7569 1dlt:A (1.9) BS02 CAQ 1.13.11.1 GO:0003824 ... P07773 10801478
    7570 1dlt:B (1.9) BS01 FE 1.13.11.1 GO:0003824 ... P07773 10801478
    7571 1dlt:B (1.9) BS02 CAQ 1.13.11.1 GO:0003824 ... P07773 10801478
    7572 1dlv:A (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7573 1dlv:B (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7574 1dlv:C (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7575 1dlv:D (2.29) BS01 COA 2.3.1.9 GO:0003985 ... P07097 10764581
    7576 1dlw:A (1.54) BS01 HEM ? GO:0005344 ... P15160 10835341
    7577 1dly:A (1.8) BS01 HEM ? GO:0005344 ... Q08753 10835341
    7578 1dm1:A (1.99) BS01 HEM ? GO:0005344 ... P02210 10694477
    7579 1dm2:A (2.1) BS01 HMD 2.7.11.22 GO:0000082 ... P24941 10662688 PDBbind: -logKd/Ki=7.15, IC50=70nM
    7580 1dm3:A (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7581 1dm3:B (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7582 1dm3:C (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7583 1dm3:D (2.0) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 10764581
    7584 1dm4:B (2.5) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10739913
    7585 1dm5:A (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7586 1dm5:A (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7587 1dm5:B (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7588 1dm5:B (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7589 1dm5:C (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7590 1dm5:C (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7591 1dm5:D (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7592 1dm5:D (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7593 1dm5:E (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7594 1dm5:E (1.93) BS02 CA ? GO:0005509 ... P26256 10704197
    7595 1dm5:F (1.93) BS01 CA ? GO:0005509 ... P26256 10704197
    7596 1dm6:A (1.95) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11695891
    7597 1dm6:A (1.95) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11695891
    7598 1dm6:A (1.95) BS03 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7599 1dm6:A (1.95) BS04 PH3 1.14.13.39 GO:0004517 ... P29473 11695891
    7600 1dm6:A (1.95) BS05 PH3 1.14.13.39 GO:0004517 ... P29473 11695891

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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