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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45001 1ryw:B (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    45002 1ryw:B (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    45003 1ryw:C (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    45004 1ryw:C (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    45005 1ryw:D (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    45006 1ryw:D (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    45007 1ryw:E (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    45008 1ryw:E (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    45009 1ryw:F (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    45010 1ryw:F (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    45011 1ryw:G (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    45012 1ryw:G (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    45013 1ryw:H (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    45014 1ryw:H (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    45015 1rz0:A (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45016 1rz0:B (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45017 1rz0:C (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45018 1rz0:D (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45019 1rz0:E (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45020 1rz0:F (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45021 1rz0:G (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45022 1rz0:H (2.2) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45023 1rz1:A (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45024 1rz1:A (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45025 1rz1:B (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45026 1rz1:B (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45027 1rz1:C (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45028 1rz1:C (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45029 1rz1:C (2.1) BS03 NAD ? GO:0000166 ... Q9LAG2 14703520
    45030 1rz1:D (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45031 1rz1:D (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45032 1rz1:E (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45033 1rz1:E (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45034 1rz1:F (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45035 1rz1:F (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45036 1rz1:G (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45037 1rz1:G (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45038 1rz1:H (2.1) BS01 FAD ? GO:0000166 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    45039 1rz1:H (2.1) BS02 NAD ? GO:0000166 ... Q9LAG2 14703520
    45040 1rz5:A (2.4) BS01 CA 1.11.1.5 GO:0004130 ... P83787 15274917
    45041 1rz5:A (2.4) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    45042 1rz5:A (2.4) BS03 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    45043 1rz6:A (2.2) BS01 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    45044 1rz6:A (2.2) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    45045 1rza:A (1.9) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299481
    45046 1rzb:A (1.8) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299481
    45047 1rzc:A (1.9) BS01 CU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299481
    45048 1rzc:A (1.9) BS02 OXY 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299481
    45049 1rzd:A (1.9) BS01 MN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299481
    45050 1rze:A (1.9) BS01 NI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299481
    45051 1rzh:L (1.8) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    45052 1rzh:L (1.8) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    45053 1rzh:L (1.8) BS03 BPH ? GO:0009772 ... P0C0Y8 15062092
    45054 1rzh:L (1.8) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    45055 1rzh:L (1.8) BS05 FE2 ? GO:0009772 ... P0C0Y8 15062092
    45056 1rzh:L (1.8) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    45057 1rzh:L (1.8) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    45058 1rzh:L (1.8) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    45059 1rzh:M (1.8) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    45060 1rzh:M (1.8) BS02 BPH ? GO:0009772 ... P0C0Y9 15062092
    45061 1rzh:M (1.8) BS03 FE2 ? GO:0009772 ... P0C0Y9 15062092
    45062 1rzh:M (1.8) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    45063 1rzh:M (1.8) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    45064 1rzh:M (1.8) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    45065 1rzh:M (1.8) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    45066 1rzh:M (1.8) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    45067 1rzl:A (1.6) BS01 SO4 ? GO:0006869 ... Q0IQK9 9512714
    45068 1rzm:A (2.2) BS01 PEP 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    45069 1rzm:A (2.2) BS02 E4P 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    45070 1rzm:B (2.2) BS01 PEP 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    45071 1rzm:B (2.2) BS02 E4P 2.5.1.54 GO:0003849 ... Q9WYH8 15276836
    45072 1rzo:A (2.63) BS01 GAL 3.2.2.22 GO:0017148 ... P06750 N/A
    45073 1rzo:C (2.63) BS01 GAL 3.2.2.22 GO:0017148 ... P06750 N/A
    45074 1rzp:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45075 1rzp:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45076 1rzp:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45077 1rzp:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45078 1rzp:C (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45079 1rzp:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45080 1rzq:A (2.2) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45081 1rzq:A (2.2) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45082 1rzq:B (2.2) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45083 1rzq:B (2.2) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45084 1rzq:C (2.2) BS01 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45085 1rzq:C (2.2) BS02 CU 1.7.2.1 GO:0005507 ... P25006 15003518
    45086 1rzr:A (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    45087 1rzr:A (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    45088 1rzr:A (2.8) BS03 MG ? GO:0000976 ... P46828 15369672
    45089 1rzr:C (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    45090 1rzr:C (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    45091 1rzr:D (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    45092 1rzr:D (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    45093 1rzr:D (2.8) BS03 MG ? GO:0000976 ... P46828 15369672
    45094 1rzr:G (2.8) BS01 dna ? GO:0000976 ... P46828 15369672
    45095 1rzr:G (2.8) BS02 dna ? GO:0000976 ... P46828 15369672
    45096 1rzt:A (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45097 1rzt:A (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45098 1rzt:A (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45099 1rzt:A (2.1) BS04 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45100 1rzt:E (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45101 1rzt:E (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45102 1rzt:E (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45103 1rzt:I (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45104 1rzt:I (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45105 1rzt:I (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45106 1rzt:M (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45107 1rzt:M (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45108 1rzt:M (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45109 1rzt:M (2.1) BS04 dna 2.7.7.7
    4.2.99.-
    GO:0003677 ... Q9UGP5 14992725
    45110 1rzu:A (2.3) BS01 ADP 2.4.1.21 GO:0004373 ... P0A3F3 15272305
    45111 1rzu:B (2.3) BS01 ADP 2.4.1.21 GO:0004373 ... P0A3F3 15272305
    45112 1rzy:A (1.8) BS01 5AS 3.4.22.-
    3.9.1.-
    GO:0000118 ... P80912 14982931 MOAD: Ki=1.25uM
    45113 1rzz:L (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    45114 1rzz:L (2.4) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    45115 1rzz:L (2.4) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    45116 1rzz:L (2.4) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    45117 1rzz:L (2.4) BS05 FE2 ? GO:0009772 ... P0C0Y8 15062092
    45118 1rzz:L (2.4) BS06 BPH ? GO:0009772 ... P0C0Y8 15062092
    45119 1rzz:L (2.4) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    45120 1rzz:M (2.4) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    45121 1rzz:M (2.4) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    45122 1rzz:M (2.4) BS03 U10 ? GO:0009772 ... P0C0Y9 15062092
    45123 1rzz:M (2.4) BS04 FE2 ? GO:0009772 ... P0C0Y9 15062092
    45124 1rzz:M (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    45125 1rzz:M (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    45126 1rzz:M (2.4) BS07 BPH ? GO:0009772 ... P0C0Y9 15062092
    45127 1rzz:M (2.4) BS08 U10 ? GO:0009772 ... P0C0Y9 15062092
    45128 1rzz:M (2.4) BS09 SPO ? GO:0009772 ... P0C0Y9 15062092
    45129 1rzz:R (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    45130 1rzz:R (2.4) BS02 BPH ? GO:0009772 ... P0C0Y8 15062092
    45131 1rzz:R (2.4) BS03 U10 ? GO:0009772 ... P0C0Y8 15062092
    45132 1rzz:R (2.4) BS04 FE2 ? GO:0009772 ... P0C0Y8 15062092
    45133 1rzz:R (2.4) BS05 BCL ? GO:0009772 ... P0C0Y8 15062092
    45134 1rzz:R (2.4) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    45135 1rzz:R (2.4) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    45136 1rzz:S (2.4) BS01 BPH ? GO:0009772 ... P0C0Y9 15062092
    45137 1rzz:S (2.4) BS02 FE2 ? GO:0009772 ... P0C0Y9 15062092
    45138 1rzz:S (2.4) BS03 BCL ? GO:0009772 ... P0C0Y9 15062092
    45139 1rzz:S (2.4) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    45140 1rzz:S (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    45141 1rzz:S (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    45142 1rzz:S (2.4) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    45143 1rzz:S (2.4) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    45144 1s00:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    45145 1s00:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    45146 1s00:L (2.6) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    45147 1s00:L (2.6) BS04 BPH ? GO:0009772 ... P0C0Y8 15062092
    45148 1s00:L (2.6) BS05 U10 ? GO:0009772 ... P0C0Y8 15062092
    45149 1s00:L (2.6) BS06 FE2 ? GO:0009772 ... P0C0Y8 15062092
    45150 1s00:L (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    45151 1s00:L (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    45152 1s00:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    45153 1s00:M (2.6) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    45154 1s00:M (2.6) BS03 BPH ? GO:0009772 ... P0C0Y9 15062092
    45155 1s00:M (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y9 15062092
    45156 1s00:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    45157 1s00:M (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    45158 1s00:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    45159 1s00:M (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    45160 1s00:R (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    45161 1s00:R (2.6) BS02 BPH ? GO:0009772 ... P0C0Y8 15062092
    45162 1s00:R (2.6) BS03 U10 ? GO:0009772 ... P0C0Y8 15062092
    45163 1s00:R (2.6) BS04 FE2 ? GO:0009772 ... P0C0Y8 15062092
    45164 1s00:R (2.6) BS05 BCL ? GO:0009772 ... P0C0Y8 15062092
    45165 1s00:R (2.6) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    45166 1s00:R (2.6) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    45167 1s00:S (2.6) BS01 BPH ? GO:0009772 ... P0C0Y9 15062092
    45168 1s00:S (2.6) BS02 FE2 ? GO:0009772 ... P0C0Y9 15062092
    45169 1s00:S (2.6) BS03 BCL ? GO:0009772 ... P0C0Y9 15062092
    45170 1s00:S (2.6) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    45171 1s00:S (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    45172 1s00:S (2.6) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    45173 1s00:S (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    45174 1s00:S (2.6) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    45175 1s01:A (1.7) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    45176 1s02:A (1.9) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2127106
    45177 1s02:A (1.9) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2127106
    45178 1s03:G (2.7) BS01 rna ? GO:0000028 ... P0A7W7 15146079 PDBbind: Kd=0.2uM
    45179 1s03:H (2.7) BS01 rna ? GO:0000028 ... P0A7W7 15146079 PDBbind: Kd=0.2uM
    45180 1s05:A (-1.00) BS01 HEC ? GO:0005506 ... P00150 14735333
    45181 1s07:A (2.42) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 14756557
    45182 1s07:B (2.42) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 14756557
    45183 1s0b:A (2.0) BS01 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45184 1s0b:A (2.0) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45185 1s0c:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    45186 1s0c:A (2.2) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45187 1s0c:A (2.2) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45188 1s0d:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    45189 1s0d:A (2.2) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45190 1s0d:A (2.2) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45191 1s0e:A (1.9) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    45192 1s0e:A (1.9) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45193 1s0e:A (1.9) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45194 1s0f:A (2.3) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 14979717
    45195 1s0f:A (2.3) BS02 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45196 1s0f:A (2.3) BS03 CA 3.4.24.69 GO:0004222 ... P10844 14979717
    45197 1s0h:A (3.0) BS01 HEM ? GO:0004601 ... P01959 16488065
    45198 1s0h:B (3.0) BS01 HEM ? GO:0004601 ... D1MPT0 16488065
    45199 1s0i:A (1.6) BS01 GLC 3.2.1.18 GO:0004308 ... Q26966 15130470
    45200 1s0i:A (1.6) BS02 SIA 3.2.1.18 GO:0004308 ... Q26966 15130470

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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