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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44401 1rva:A (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44402 1rva:A (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44403 1rva:B (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44404 1rva:B (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44405 1rvb:A (2.1) BS01 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44406 1rvb:A (2.1) BS02 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44407 1rvb:B (2.1) BS01 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44408 1rvb:B (2.1) BS02 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44409 1rvb:B (2.1) BS03 MG 3.1.21.4 GO:0003677 ... P04390 7819264
    44410 1rvb:B (2.1) BS04 MG 3.1.21.4 GO:0003677 ... P04390 7819264
    44411 1rvc:A (2.1) BS01 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44412 1rvc:A (2.1) BS02 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44413 1rvc:A (2.1) BS03 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44414 1rvc:A (2.1) BS04 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44415 1rvc:A (2.1) BS05 MG 3.1.21.4 GO:0003677 ... P04390 7819264
    44416 1rvc:B (2.1) BS01 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44417 1rvc:B (2.1) BS02 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44418 1rvc:B (2.1) BS03 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44419 1rvc:B (2.1) BS04 dna 3.1.21.4 GO:0003677 ... P04390 7819264
    44420 1rvc:B (2.1) BS05 MG 3.1.21.4 GO:0003677 ... P04390 7819264
    44421 1rvd:A (1.9) BS01 DBG 3.6.5.2 GO:0003924 ... P01112 10359839
    44422 1rvg:A (2.0) BS01 SO4 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44423 1rvg:A (2.0) BS02 SO4 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44424 1rvg:A (2.0) BS03 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44425 1rvg:A (2.0) BS04 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44426 1rvg:B (2.0) BS01 SO4 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44427 1rvg:B (2.0) BS02 SO4 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44428 1rvg:B (2.0) BS03 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44429 1rvg:C (2.0) BS01 SO4 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44430 1rvg:C (2.0) BS02 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44431 1rvg:D (2.0) BS01 SO4 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44432 1rvg:D (2.0) BS02 CO 4.1.2.13 GO:0004332 ... Q9RHA2 14699122
    44433 1rvj:L (2.75) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    44434 1rvj:L (2.75) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    44435 1rvj:L (2.75) BS03 BPH ? GO:0009772 ... P0C0Y8 15062092
    44436 1rvj:L (2.75) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    44437 1rvj:L (2.75) BS05 FE2 ? GO:0009772 ... P0C0Y8 15062092
    44438 1rvj:L (2.75) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    44439 1rvj:L (2.75) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    44440 1rvj:L (2.75) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    44441 1rvj:M (2.75) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    44442 1rvj:M (2.75) BS02 BPH ? GO:0009772 ... P0C0Y9 15062092
    44443 1rvj:M (2.75) BS03 U10 ? GO:0009772 ... P0C0Y9 15062092
    44444 1rvj:M (2.75) BS04 FE2 ? GO:0009772 ... P0C0Y9 15062092
    44445 1rvj:M (2.75) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    44446 1rvj:M (2.75) BS06 BCL ? GO:0009772 ... P0C0Y9 15062092
    44447 1rvj:M (2.75) BS07 BPH ? GO:0009772 ... P0C0Y9 15062092
    44448 1rvj:M (2.75) BS08 U10 ? GO:0009772 ... P0C0Y9 15062092
    44449 1rvj:M (2.75) BS09 SPO ? GO:0009772 ... P0C0Y9 15062092
    44450 1rvk:A (1.7) BS01 MG ? GO:0000287 ... Q7CSI0 N/A
    44451 1rvt:H (2.5) BS01 GAL ? GO:0019031 ... Q82500 14764886
    44452 1rvt:H (2.5) BS02 SIA ? GO:0019031 ... Q82500 14764886
    44453 1rvt:J (2.5) BS01 GAL ? GO:0019031 ... Q82500 14764886
    44454 1rvt:J (2.5) BS02 SIA ? GO:0019031 ... Q82500 14764886
    44455 1rvt:L (2.5) BS01 GAL ? GO:0019031 ... Q82500 14764886
    44456 1rvt:L (2.5) BS02 SIA ? GO:0019031 ... Q82500 14764886
    44457 1rvu:A (2.5) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    44458 1rvu:A (2.5) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    44459 1rvu:B (2.5) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    44460 1rvu:B (2.5) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    44461 1rvv:1 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44462 1rvv:2 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44463 1rvv:2 (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44464 1rvv:3 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44465 1rvv:4 (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44466 1rvv:4 (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44467 1rvv:A (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44468 1rvv:B (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44469 1rvv:C (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44470 1rvv:D (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44471 1rvv:D (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44472 1rvv:E (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44473 1rvv:E (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44474 1rvv:F (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44475 1rvv:F (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44476 1rvv:G (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44477 1rvv:G (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44478 1rvv:H (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44479 1rvv:I (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44480 1rvv:J (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44481 1rvv:K (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44482 1rvv:K (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44483 1rvv:L (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44484 1rvv:M (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44485 1rvv:M (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44486 1rvv:N (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44487 1rvv:O (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44488 1rvv:O (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44489 1rvv:P (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44490 1rvv:Q (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44491 1rvv:R (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44492 1rvv:S (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44493 1rvv:S (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44494 1rvv:T (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44495 1rvv:U (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44496 1rvv:V (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44497 1rvv:V (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44498 1rvv:W (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44499 1rvv:X (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44500 1rvv:Y (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44501 1rvv:Z (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    44502 1rvw:A (2.5) BS01 HEM ? GO:0004601 ... P69905 9649306
    44503 1rvw:B (2.5) BS01 HEM ? GO:0004601 ... P68871 9649306
    44504 1rvx:A (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    44505 1rvx:C (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    44506 1rvx:E (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    44507 1rvx:G (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    44508 1rvx:I (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    44509 1rvx:K (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    44510 1rvy:A (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    44511 1rvy:B (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    44512 1rvy:B (2.9) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    44513 1rvz:A (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    44514 1rvz:A (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    44515 1rvz:C (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    44516 1rvz:C (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    44517 1rvz:E (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    44518 1rvz:E (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    44519 1rvz:G (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    44520 1rvz:G (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    44521 1rvz:I (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    44522 1rvz:I (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    44523 1rvz:K (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    44524 1rvz:K (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    44525 1rw4:A (2.5) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 14967020
    44526 1rw8:A (2.4) BS01 580 2.7.11.30 GO:0004672 ... P36897 15177479 MOAD: ic50=0.175uM
    PDBbind: -logKd/Ki=6.76, IC50=0.175uM
    BindingDB: IC50=1320nM
    44527 1rwb:A (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    44528 1rwb:B (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    44529 1rwb:E (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    44530 1rwb:F (2.0) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 15933031
    44531 1rwc:A (1.9) BS01 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    44532 1rwe:B (1.8) BS01 peptide ? GO:0005179 ... P01308 15610006
    44533 1rwe:D (1.8) BS01 peptide ? GO:0005179 ... P01308 15610006
    44534 1rwf:A (1.45) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    44535 1rwf:A (1.45) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    44536 1rwf:A (1.45) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    44537 1rwf:A (1.45) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    44538 1rwg:A (1.5) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    44539 1rwg:A (1.5) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    44540 1rwg:A (1.5) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    44541 1rwg:A (1.5) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    44542 1rwh:A (1.25) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    44543 1rwh:A (1.25) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    44544 1rwh:A (1.25) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    44545 1rwh:A (1.25) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    44546 1rwk:A (2.3) BS01 158 3.4.22.36 GO:0004197 ... P29466 16511067
    44547 1rwk:B (2.3) BS01 158 3.4.22.36 GO:0004197 ... P29466 16511067
    44548 1rwm:A (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    44549 1rwm:B (2.7) BS01 Q2Y 3.4.22.36 GO:0004197 ... P29466 16511067 BindingDB: Ki=120nM
    44550 1rwn:A (2.0) BS01 4QB 3.4.22.36 GO:0004197 ... P29466 16511067
    44551 1rwn:B (2.0) BS01 4QB 3.4.22.36 GO:0004197 ... P29466 16511067
    44552 1rwo:A (2.1) BS01 BTH 3.4.22.36 GO:0004197 ... P29466 16511067
    44553 1rwo:B (2.1) BS01 BTH 3.4.22.36 GO:0004197 ... P29466 16511067
    44554 1rwp:A (2.2) BS01 HQC 3.4.22.36 GO:0004197 ... P29466 16511067
    44555 1rwp:B (2.2) BS01 HQC 3.4.22.36 GO:0004197 ... P29466 16511067
    44556 1rwq:A (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    BindingDB: IC50=0.1nM
    44557 1rwq:B (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    BindingDB: IC50=0.1nM
    44558 1rwt:A (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44559 1rwt:A (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    44560 1rwt:A (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    44561 1rwt:A (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44562 1rwt:A (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    44563 1rwt:A (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    44564 1rwt:A (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44565 1rwt:A (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44566 1rwt:A (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44567 1rwt:A (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    44568 1rwt:A (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    44569 1rwt:A (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44570 1rwt:A (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44571 1rwt:A (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44572 1rwt:B (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44573 1rwt:B (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    44574 1rwt:B (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    44575 1rwt:B (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44576 1rwt:B (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    44577 1rwt:B (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    44578 1rwt:B (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44579 1rwt:B (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44580 1rwt:B (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44581 1rwt:B (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    44582 1rwt:B (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    44583 1rwt:B (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    44584 1rwt:B (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    44585 1rwt:B (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    44586 1rwt:B (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    44587 1rwt:B (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    44588 1rwt:B (2.72) BS17 CHL ? GO:0009765 ... P12333 15029188
    44589 1rwt:C (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    44590 1rwt:C (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    44591 1rwt:C (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    44592 1rwt:C (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    44593 1rwt:C (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    44594 1rwt:C (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    44595 1rwt:C (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    44596 1rwt:C (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    44597 1rwt:C (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    44598 1rwt:C (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    44599 1rwt:C (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    44600 1rwt:C (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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