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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40001 1q4w:A (1.93) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    40002 1q4w:A (1.93) BS02 DQU 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=0.35uM
    PDBbind: -logKd/Ki=6.46, Ki=0.35uM
    40003 1q4x:A (2.8) BS01 G24 ? GO:0003677 ... P10828 14673100 PDBbind: -logKd/Ki=9.48, Kd=0.33nM
    40004 1q51:A (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40005 1q51:B (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40006 1q51:C (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40007 1q51:D (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40008 1q51:E (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40009 1q51:F (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40010 1q51:G (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40011 1q51:H (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40012 1q51:I (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40013 1q51:J (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40014 1q51:K (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40015 1q51:L (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40016 1q54:A (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    40017 1q54:A (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    40018 1q54:A (1.93) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 12630859 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    40019 1q54:B (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    40020 1q54:B (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    40021 1q54:B (1.93) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 12630859 MOAD: Ki=1.4uM
    40022 1q55:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40023 1q55:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40024 1q55:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40025 1q55:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40026 1q55:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40027 1q55:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40028 1q55:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40029 1q55:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40030 1q55:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40031 1q55:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40032 1q55:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40033 1q55:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40034 1q55:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40035 1q55:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40036 1q55:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40037 1q55:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40038 1q55:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40039 1q55:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40040 1q55:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40041 1q55:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40042 1q55:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40043 1q55:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40044 1q55:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40045 1q55:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40046 1q55:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40047 1q55:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40048 1q55:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40049 1q55:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40050 1q55:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40051 1q55:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40052 1q55:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40053 1q55:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40054 1q55:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40055 1q55:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40056 1q55:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40057 1q55:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40058 1q55:D (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40059 1q55:D (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40060 1q55:D (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40061 1q55:D (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40062 1q55:D (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40063 1q55:D (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40064 1q55:D (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40065 1q55:D (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40066 1q55:D (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40067 1q55:D (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40068 1q55:D (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40069 1q55:D (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40070 1q5a:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40071 1q5a:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40072 1q5a:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40073 1q5a:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40074 1q5a:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40075 1q5a:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40076 1q5a:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40077 1q5a:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40078 1q5a:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40079 1q5a:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40080 1q5a:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40081 1q5a:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40082 1q5a:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40083 1q5a:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40084 1q5a:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40085 1q5a:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40086 1q5a:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40087 1q5a:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40088 1q5a:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40089 1q5a:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40090 1q5a:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40091 1q5a:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40092 1q5a:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40093 1q5a:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40094 1q5b:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40095 1q5b:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40096 1q5b:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40097 1q5b:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40098 1q5b:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40099 1q5b:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40100 1q5b:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40101 1q5b:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40102 1q5b:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40103 1q5b:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40104 1q5b:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40105 1q5b:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40106 1q5b:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40107 1q5b:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40108 1q5b:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40109 1q5b:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40110 1q5b:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40111 1q5b:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40112 1q5b:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40113 1q5b:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40114 1q5b:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40115 1q5b:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40116 1q5b:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40117 1q5b:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40118 1q5b:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40119 1q5b:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40120 1q5b:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40121 1q5b:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40122 1q5b:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40123 1q5b:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40124 1q5b:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40125 1q5b:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40126 1q5b:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40127 1q5b:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40128 1q5b:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40129 1q5b:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40130 1q5c:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40131 1q5c:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40132 1q5c:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40133 1q5c:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40134 1q5c:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40135 1q5c:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40136 1q5c:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40137 1q5c:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40138 1q5c:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40139 1q5c:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40140 1q5c:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40141 1q5c:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40142 1q5c:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40143 1q5c:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40144 1q5c:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40145 1q5c:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40146 1q5c:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40147 1q5c:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40148 1q5c:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40149 1q5c:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40150 1q5c:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40151 1q5c:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40152 1q5c:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40153 1q5c:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40154 1q5c:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40155 1q5c:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40156 1q5c:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40157 1q5c:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40158 1q5c:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40159 1q5c:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40160 1q5c:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40161 1q5c:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40162 1q5c:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40163 1q5c:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40164 1q5c:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40165 1q5c:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40166 1q5c:D (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    40167 1q5c:D (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    40168 1q5c:D (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40169 1q5c:D (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    40170 1q5c:D (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    40171 1q5c:D (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    40172 1q5c:D (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    40173 1q5c:D (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    40174 1q5c:D (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    40175 1q5c:D (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    40176 1q5c:D (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    40177 1q5c:D (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    40178 1q5d:A (1.93) BS01 HEM 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    40179 1q5d:A (1.93) BS02 EPB 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    40180 1q5e:A (2.65) BS01 HEM 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    40181 1q5i:A (2.3) BS01 RET ? GO:0005216 ... P02945 14732697
    40182 1q5i:B (2.3) BS01 RET ? GO:0005216 ... P02945 14732697
    40183 1q5j:A (2.1) BS01 RET ? GO:0005216 ... P02945 14732697
    40184 1q5j:B (2.1) BS01 RET ? GO:0005216 ... P02945 14732697
    40185 1q5k:A (1.94) BS01 TMU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 12928438 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    BindingDB: IC50=104nM, Ki=38nM
    40186 1q5k:B (1.94) BS01 TMU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 12928438 MOAD: Ki=38nM
    BindingDB: IC50=104nM, Ki=38nM
    40187 1q5l:A (-1.00) BS01 peptide ? GO:0005524 ... P0A6Y8 14573869
    40188 1q5m:A (1.32) BS01 NDP 1.1.1.149
    1.1.1.189    		 GO:0001516 ... P80508 15123423
    40189 1q5m:B (1.32) BS01 NDP 1.1.1.149
    1.1.1.189    		 GO:0001516 ... P80508 15123423
    40190 1q5p:A (1.6) BS01 CA 3.4.21.62 GO:0004252 ... P29600 12962477
    40191 1q5p:A (1.6) BS02 CA 3.4.21.62 GO:0004252 ... P29600 12962477
    40192 1q61:A (2.1) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 12798691
    40193 1q61:A (2.1) BS02 MG8 2.7.11.11 GO:0001669 ... P00517 12798691
    40194 1q62:A (2.3) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 12798691
    40195 1q63:A (1.85) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    40196 1q63:A (1.85) BS02 AIQ 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    40197 1q65:A (2.1) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    40198 1q65:A (2.1) BS02 BHB 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=3.5uM
    PDBbind: -logKd/Ki=5.46, Ki=3.5uM
    40199 1q66:A (1.75) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    40200 1q66:A (1.75) BS02 KMB 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=1.7uM
    PDBbind: -logKd/Ki=5.77, Ki=1.7uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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