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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24801 1kb9:E (2.3) BS01 PIE 7.1.1.8 GO:0008121 ... P08067 11726495
    24802 1kb9:E (2.3) BS02 FES 7.1.1.8 GO:0008121 ... P08067 11726495
    24803 1kbb:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    24804 1kbc:A (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    24805 1kbc:A (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    24806 1kbc:A (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    24807 1kbc:A (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    24808 1kbc:A (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    24809 1kbc:A (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    24810 1kbc:B (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    24811 1kbc:B (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    24812 1kbc:B (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    24813 1kbc:B (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    24814 1kbc:B (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    24815 1kbc:B (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    24816 1kbi:A (2.3) BS01 HEM 1.1.2.3 GO:0016491 ... P00175 11914072
    24817 1kbi:A (2.3) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 11914072
    24818 1kbi:B (2.3) BS01 FMN 1.1.2.3 GO:0016491 ... P00175 11914072
    24819 1kbi:B (2.3) BS02 PYR 1.1.2.3 GO:0016491 ... P00175 11914072
    24820 1kbj:A (2.5) BS01 FMN 1.1.2.3 GO:0010181 ... P00175 11914072
    24821 1kbj:B (2.5) BS01 FMN 1.1.2.3 GO:0010181 ... P00175 11914072
    24822 1kbk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    24823 1kbn:A (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    24824 1kbn:B (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    24825 1kbo:A (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24826 1kbo:A (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24827 1kbo:A (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24828 1kbo:A (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24829 1kbo:B (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24830 1kbo:B (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24831 1kbo:B (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24832 1kbo:B (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24833 1kbo:C (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24834 1kbo:C (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24835 1kbo:C (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24836 1kbo:C (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24837 1kbo:D (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24838 1kbo:D (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24839 1kbo:D (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    24840 1kbo:D (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24841 1kbp:A (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    24842 1kbp:A (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    24843 1kbp:B (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    24844 1kbp:B (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    24845 1kbp:C (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    24846 1kbp:C (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    24847 1kbp:D (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    24848 1kbp:D (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    24849 1kbq:A (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24850 1kbq:A (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24851 1kbq:A (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24852 1kbq:A (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24853 1kbq:B (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24854 1kbq:B (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24855 1kbq:B (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24856 1kbq:B (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24857 1kbq:C (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24858 1kbq:C (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24859 1kbq:C (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24860 1kbq:C (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24861 1kbq:D (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24862 1kbq:D (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24863 1kbq:D (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    24864 1kbq:D (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    24865 1kbu:A (2.2) BS01 dna ? GO:0003677 ... P06956 12051940
    24866 1kbu:B (2.2) BS01 dna ? GO:0003677 ... P06956 12051940
    24867 1kbu:B (2.2) BS02 dna ? GO:0003677 ... P06956 12051940
    24868 1kbv:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24869 1kbv:A (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24870 1kbv:A (1.95) BS03 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24871 1kbv:A (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24872 1kbv:B (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24873 1kbv:B (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24874 1kbv:B (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24875 1kbv:B (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24876 1kbv:C (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24877 1kbv:C (1.95) BS02 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24878 1kbv:C (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24879 1kbv:C (1.95) BS04 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24880 1kbv:D (1.95) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24881 1kbv:D (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24882 1kbv:D (1.95) BS03 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24883 1kbv:D (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24884 1kbv:E (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24885 1kbv:E (1.95) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24886 1kbv:E (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24887 1kbv:E (1.95) BS04 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24888 1kbv:F (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24889 1kbv:F (1.95) BS02 NO2 1.7.2.1 GO:0005507 ... Q02219 11827480
    24890 1kbv:F (1.95) BS03 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24891 1kbv:F (1.95) BS04 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24892 1kbw:A (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24893 1kbw:A (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24894 1kbw:B (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24895 1kbw:B (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24896 1kbw:C (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24897 1kbw:C (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24898 1kbw:D (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24899 1kbw:D (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24900 1kbw:E (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24901 1kbw:E (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24902 1kbw:F (2.4) BS01 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24903 1kbw:F (2.4) BS02 CU 1.7.2.1 GO:0005507 ... Q02219 11827480
    24904 1kby:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 16228547
    24905 1kby:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 16228547
    24906 1kby:L (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 16228547
    24907 1kby:L (2.5) BS04 BPH ? GO:0009772 ... P0C0Y8 16228547
    24908 1kby:L (2.5) BS05 BPH ? GO:0009772 ... P0C0Y8 16228547
    24909 1kby:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 16228547
    24910 1kby:L (2.5) BS07 U10 ? GO:0009772 ... P0C0Y8 16228547
    24911 1kby:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 16228547
    24912 1kby:M (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 16228547
    24913 1kby:M (2.5) BS03 BPH ? GO:0009772 ... P0C0Y9 16228547
    24914 1kby:M (2.5) BS04 BPH ? GO:0009772 ... P0C0Y9 16228547
    24915 1kby:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 16228547
    24916 1kby:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 16228547
    24917 1kby:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 16228547
    24918 1kby:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 16228547
    24919 1kc1:A (2.6) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    24920 1kc3:A (2.7) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    24921 1kc3:A (2.7) BS02 TRH 1.1.1.133 GO:0005829 ... P26392 12057193
    24922 1kc4:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11790782
    24923 1kc5:L (2.5) BS01 peptide ? GO:0005576 ... P01837 11859128
    24924 1kc6:A (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24925 1kc6:A (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24926 1kc6:B (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24927 1kc6:B (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24928 1kc6:C (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24929 1kc6:C (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24930 1kc6:D (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24931 1kc6:D (2.6) BS02 dna 3.1.21.4 GO:0003677 ... P17743 11742344
    24932 1kc7:A (2.2) BS01 MG 2.7.9.1 GO:0003824 ... P22983 11790099
    24933 1kc7:A (2.2) BS02 PPR 2.7.9.1 GO:0003824 ... P22983 11790099 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3uM
    24934 1kc8:1 (3.01) BS01 rna ? GO:0003735 ... P60619 12860128
    24935 1kc8:2 (3.01) BS01 rna ? GO:0003723 ... P32410 12860128
    24936 1kc8:3 (3.01) BS01 rna ? GO:0003735 ... P22452 12860128
    24937 1kc8:4 (3.01) BS01 rna ? GO:0000049 ... P32411 12860128
    24938 1kc8:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    24939 1kc8:C (3.01) BS01 rna ? GO:0002181 ... P20276 12860128
    24940 1kc8:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    24941 1kc8:D (3.01) BS01 rna ? GO:0003723 ... P20279 12860128
    24942 1kc8:E (3.01) BS01 rna ? GO:0003723 ... P12735 12860128
    24943 1kc8:F (3.01) BS01 rna ? GO:0000049 ... P14124 12860128
    24944 1kc8:F (3.01) BS02 rna ? GO:0000049 ... P14124 12860128
    24945 1kc8:G (3.01) BS01 rna ? GO:0002181 ... P14135 12860128
    24946 1kc8:H (3.01) BS01 rna ? GO:0001682 ... P12743 12860128
    24947 1kc8:J (3.01) BS01 rna ? GO:0000027 ... P60617 12860128
    24948 1kc8:K (3.01) BS01 rna ? GO:0003729 ... P29198 12860128
    24949 1kc8:L (3.01) BS01 rna ? GO:0003735 ... P22450 12860128
    24950 1kc8:M (3.01) BS01 rna ? GO:0003735 ... P12737 12860128
    24951 1kc8:N (3.01) BS01 rna ? GO:0002181 ... P60618 12860128
    24952 1kc8:O (3.01) BS01 rna ? GO:0000027 ... P14123 12860128
    24953 1kc8:O (3.01) BS02 rna ? GO:0000027 ... P14123 12860128
    24954 1kc8:P (3.01) BS01 rna ? GO:0003723 ... P12733 12860128
    24955 1kc8:Q (3.01) BS01 rna ? GO:0003723 ... P14119 12860128
    24956 1kc8:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    24957 1kc8:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    24958 1kc8:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    24959 1kc8:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    24960 1kc8:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    24961 1kc8:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    24962 1kc8:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    24963 1kc8:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    24964 1kc8:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    24965 1kc8:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    24966 1kc8:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    24967 1kc8:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    24968 1kc8:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    24969 1kcb:A (1.65) BS01 CU 1.7.2.1 GO:0005507 ... P25006 12615072
    24970 1kcb:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P25006 12615072
    24971 1kcc:A (1.0) BS01 GTR 3.2.1.15 GO:0004650 ... P79074 12022868
    24972 1kcd:A (1.15) BS01 GTK 3.2.1.15 GO:0004650 ... P79074 12022868
    24973 1kcd:A (1.15) BS02 GTR 3.2.1.15 GO:0004650 ... P79074 12022868
    24974 1kce:A (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    24975 1kce:A (2.0) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    24976 1kce:B (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    24977 1kce:B (2.0) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    24978 1kck:A (2.43) BS01 G6D 2.4.1.19 GO:0003824 ... P43379 11696539
    24979 1kck:A (2.43) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24980 1kck:A (2.43) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24981 1kck:A (2.43) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24982 1kck:A (2.43) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24983 1kck:A (2.43) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24984 1kck:A (2.43) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24985 1kck:A (2.43) BS08 ADH 2.4.1.19 GO:0003824 ... P43379 11696539
    24986 1kck:A (2.43) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24987 1kck:A (2.43) BS10 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    24988 1kck:A (2.43) BS11 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    24989 1kcl:A (1.94) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24990 1kcl:A (1.94) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24991 1kcl:A (1.94) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24992 1kcl:A (1.94) BS04 BGC 2.4.1.19 GO:0003824 ... P43379 11696539
    24993 1kcl:A (1.94) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24994 1kcl:A (1.94) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24995 1kcl:A (1.94) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24996 1kcl:A (1.94) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24997 1kcl:A (1.94) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24998 1kcl:A (1.94) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    24999 1kcl:A (1.94) BS11 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    25000 1kcl:A (1.94) BS12 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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