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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24401 1k6p:B (2.2) BS01 XN3 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 MOAD: Kd=44nM
    PDBbind: -logKd/Ki=7.36, Kd=44nM
    24402 1k6r:A (2.3) BS01 MX1 3.5.2.6 GO:0008658 ... P14489 N/A
    24403 1k6r:B (2.3) BS01 MX1 3.5.2.6 GO:0008658 ... P14489 N/A
    24404 1k6s:A (2.03) BS01 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    24405 1k6s:A (2.03) BS02 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    24406 1k6s:A (2.03) BS03 IAP 3.5.2.6 GO:0008658 ... P14489 N/A
    24407 1k6s:B (2.03) BS01 CA 3.5.2.6 GO:0008658 ... P14489 N/A
    24408 1k6s:B (2.03) BS02 IAP 3.5.2.6 GO:0008658 ... P14489 N/A
    24409 1k6t:A (2.25) BS01 XN1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 PDBbind: -logKd/Ki=7.62, Kd=24nM
    24410 1k6t:B (2.25) BS01 XN1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 MOAD: Kd=24nM
    PDBbind: -logKd/Ki=7.62, Kd=24nM
    24411 1k6v:A (2.0) BS01 XN2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 PDBbind: -logKd/Ki=6.92, Kd=120nM
    24412 1k6v:B (2.0) BS01 XN2 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P35963 11790852 MOAD: Kd=120nM
    PDBbind: -logKd/Ki=6.92, Kd=120nM
    24413 1k6w:A (1.75) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    24414 1k6x:A (1.5) BS01 NAD ? GO:0001081 ... Q5AU62 11726498
    24415 1k6y:A (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    24416 1k6y:B (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    24417 1k6y:C (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    24418 1k6y:D (2.4) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 11743009
    24419 1k70:A (1.8) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    24420 1k70:A (1.8) BS02 HPY 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    24421 1k72:A (1.8) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    24422 1k72:A (1.8) BS02 GLC 3.2.1.4 GO:0004553 ... P37700 12837787
    24423 1k72:A (1.8) BS03 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    24424 1k72:A (1.8) BS04 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    24425 1k72:B (1.8) BS01 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    24426 1k72:B (1.8) BS02 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    24427 1k73:1 (3.01) BS01 rna ? GO:0003735 ... P60619 12860128
    24428 1k73:2 (3.01) BS01 rna ? GO:0003723 ... P32410 12860128
    24429 1k73:3 (3.01) BS01 rna ? GO:0003735 ... P22452 12860128
    24430 1k73:4 (3.01) BS01 rna ? GO:0000049 ... P32411 12860128
    24431 1k73:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    24432 1k73:C (3.01) BS01 rna ? GO:0002181 ... P20276 12860128
    24433 1k73:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    24434 1k73:D (3.01) BS01 rna ? GO:0003723 ... P20279 12860128
    24435 1k73:E (3.01) BS01 rna ? GO:0003723 ... P12735 12860128
    24436 1k73:F (3.01) BS01 rna ? GO:0000049 ... P14124 12860128
    24437 1k73:F (3.01) BS02 rna ? GO:0000049 ... P14124 12860128
    24438 1k73:G (3.01) BS01 rna ? GO:0002181 ... P14135 12860128
    24439 1k73:H (3.01) BS01 rna ? GO:0001682 ... P12743 12860128
    24440 1k73:J (3.01) BS01 rna ? GO:0000027 ... P60617 12860128
    24441 1k73:K (3.01) BS01 rna ? GO:0003729 ... P29198 12860128
    24442 1k73:L (3.01) BS01 rna ? GO:0003735 ... P22450 12860128
    24443 1k73:M (3.01) BS01 rna ? GO:0003735 ... P12737 12860128
    24444 1k73:N (3.01) BS01 rna ? GO:0002181 ... P60618 12860128
    24445 1k73:O (3.01) BS01 rna ? GO:0000027 ... P14123 12860128
    24446 1k73:O (3.01) BS02 rna ? GO:0000027 ... P14123 12860128
    24447 1k73:P (3.01) BS01 rna ? GO:0003723 ... P12733 12860128
    24448 1k73:Q (3.01) BS01 rna ? GO:0003723 ... P14119 12860128
    24449 1k73:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    24450 1k73:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    24451 1k73:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    24452 1k73:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    24453 1k73:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    24454 1k73:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    24455 1k73:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    24456 1k73:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    24457 1k73:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    24458 1k73:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    24459 1k73:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    24460 1k73:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    24461 1k73:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    24462 1k74:A (2.3) BS01 peptide ? GO:0003677 ... P19793 11698662
    24463 1k74:A (2.3) BS02 9CR ? GO:0003677 ... P19793 11698662 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    24464 1k74:D (2.3) BS01 peptide ? GO:0003677 ... P37231 11698662
    24465 1k74:D (2.3) BS02 544 ? GO:0003677 ... P37231 11698662 BindingDB: EC50=0.280000nM
    24466 1k77:A (1.63) BS01 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    24467 1k77:A (1.63) BS02 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    24468 1k78:A (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    24469 1k78:A (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    24470 1k78:B (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    24471 1k78:B (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    24472 1k78:E (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    24473 1k78:E (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    24474 1k78:F (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    24475 1k78:F (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    24476 1k78:I (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    24477 1k78:I (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    24478 1k79:A (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    24479 1k79:A (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    24480 1k79:D (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    24481 1k79:D (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    24482 1k7a:A (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    24483 1k7a:A (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    24484 1k7a:D (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    24485 1k7a:D (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    24486 1k7d:A (2.15) BS01 GRO 3.5.1.11 GO:0016787 ... P06875 15254299
    24487 1k7d:B (2.15) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    24488 1k7d:B (2.15) BS02 GRO 3.5.1.11 GO:0016787 ... P06875 15254299 MOAD: Ki=0.47mM
    24489 1k7e:A (2.3) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756456
    24490 1k7e:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    24491 1k7f:A (1.9) BS01 IAV 4.2.1.20 GO:0000162 ... P00929 11756456
    24492 1k7f:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    24493 1k7g:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24494 1k7g:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24495 1k7g:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24496 1k7g:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24497 1k7g:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24498 1k7g:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24499 1k7g:A (2.0) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    24500 1k7g:A (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24501 1k7h:A (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    24502 1k7h:A (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    24503 1k7h:A (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    24504 1k7h:B (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    24505 1k7h:B (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    24506 1k7h:B (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    24507 1k7i:A (1.59) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24508 1k7i:A (1.59) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24509 1k7i:A (1.59) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24510 1k7i:A (1.59) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24511 1k7i:A (1.59) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24512 1k7i:A (1.59) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24513 1k7i:A (1.59) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    24514 1k7i:A (1.59) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24515 1k7l:A (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    24516 1k7l:A (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    24517 1k7l:C (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    24518 1k7l:C (2.5) BS02 peptide ? GO:0003677 ... Q07869 11698662
    24519 1k7l:C (2.5) BS03 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    24520 1k7l:E (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    24521 1k7l:E (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    24522 1k7l:G (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    24523 1k7l:G (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    24524 1k7q:A (1.8) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24525 1k7q:A (1.8) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24526 1k7q:A (1.8) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24527 1k7q:A (1.8) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24528 1k7q:A (1.8) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24529 1k7q:A (1.8) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24530 1k7q:A (1.8) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    24531 1k7q:A (1.8) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    24532 1k7s:N (2.6) BS01 ALB ? GO:0005515 ... P07822 11805094
    24533 1k7w:A (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24534 1k7w:A (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24535 1k7w:B (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24536 1k7w:B (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24537 1k7w:C (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24538 1k7w:C (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24539 1k7w:D (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24540 1k7w:D (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    24541 1k7x:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    24542 1k7y:A (3.0) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    24543 1k81:A (-1.00) BS01 ZN ? GO:0003743 ... Q57562 11980477
    24544 1k82:A (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24545 1k82:A (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24546 1k82:A (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24547 1k82:A (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24548 1k82:B (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24549 1k82:B (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24550 1k82:B (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24551 1k82:B (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24552 1k82:C (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24553 1k82:C (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24554 1k82:C (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24555 1k82:C (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24556 1k82:D (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24557 1k82:D (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24558 1k82:D (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24559 1k82:D (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    24560 1k83:A (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P04050 11805306
    24561 1k83:A (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    24562 1k83:A (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    24563 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0000428 ... P04050 11805306
    24564 1k83:B (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P08518 11805306
    24565 1k83:B (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 11805306
    24566 1k83:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11805306
    24567 1k83:I (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    24568 1k83:I (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    24569 1k83:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11805306
    24570 1k83:L (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11805306
    24571 1k8a:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    24572 1k8a:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    24573 1k8a:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    24574 1k8a:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    24575 1k8a:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    24576 1k8a:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    24577 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    24578 1k8a:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    24579 1k8a:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    24580 1k8a:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    24581 1k8a:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    24582 1k8a:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    24583 1k8a:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    24584 1k8a:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    24585 1k8a:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    24586 1k8a:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    24587 1k8a:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    24588 1k8a:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    24589 1k8a:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    24590 1k8a:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    24591 1k8a:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    24592 1k8a:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    24593 1k8a:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    24594 1k8a:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    24595 1k8a:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    24596 1k8a:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    24597 1k8a:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    24598 1k8a:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    24599 1k8a:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    24600 1k8a:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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