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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23801 1jyx:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23802 1jyx:C (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23803 1jyx:C (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23804 1jyx:C (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23805 1jyx:C (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23806 1jyx:C (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    23807 1jyx:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23808 1jyx:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23809 1jyx:D (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23810 1jyx:D (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23811 1jyx:D (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23812 1jyx:D (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    23813 1jyx:D (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    23814 1jz2:A (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    23815 1jz2:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23816 1jz2:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23817 1jz2:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23818 1jz2:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23819 1jz2:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23820 1jz2:B (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    23821 1jz2:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23822 1jz2:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23823 1jz2:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23824 1jz2:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23825 1jz2:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23826 1jz2:C (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    23827 1jz2:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23828 1jz2:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23829 1jz2:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23830 1jz2:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23831 1jz2:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23832 1jz2:D (2.1) BS01 2FG 3.2.1.23 GO:0000287 ... P00722 11732897
    23833 1jz2:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23834 1jz2:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23835 1jz2:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23836 1jz2:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23837 1jz2:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23838 1jz3:A (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23839 1jz3:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23840 1jz3:A (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23841 1jz3:B (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23842 1jz3:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23843 1jz3:B (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23844 1jz3:C (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23845 1jz3:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23846 1jz3:C (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23847 1jz3:D (1.75) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23848 1jz3:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23849 1jz3:D (1.75) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23850 1jz4:A (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23851 1jz4:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23852 1jz4:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23853 1jz4:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23854 1jz4:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23855 1jz4:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23856 1jz4:A (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23857 1jz4:B (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23858 1jz4:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23859 1jz4:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23860 1jz4:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23861 1jz4:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23862 1jz4:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23863 1jz4:B (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23864 1jz4:C (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23865 1jz4:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23866 1jz4:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23867 1jz4:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23868 1jz4:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23869 1jz4:C (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23870 1jz4:C (2.1) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23871 1jz4:D (2.1) BS01 2DG 3.2.1.23 GO:0000287 ... P00722 11732897
    23872 1jz4:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23873 1jz4:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23874 1jz4:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23875 1jz4:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23876 1jz4:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23877 1jz5:A (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    23878 1jz5:A (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23879 1jz5:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23880 1jz5:B (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    23881 1jz5:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23882 1jz5:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23883 1jz5:C (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    23884 1jz5:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23885 1jz5:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23886 1jz5:D (1.8) BS01 149 3.2.1.23 GO:0000287 ... P00722 11732897
    23887 1jz5:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23888 1jz5:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23889 1jz6:A (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    23890 1jz6:A (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23891 1jz6:A (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23892 1jz6:A (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23893 1jz6:A (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23894 1jz6:A (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23895 1jz6:A (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23896 1jz6:B (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    23897 1jz6:B (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23898 1jz6:B (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23899 1jz6:B (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23900 1jz6:B (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23901 1jz6:B (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23902 1jz6:B (2.1) BS07 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23903 1jz6:C (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    23904 1jz6:C (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23905 1jz6:C (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23906 1jz6:C (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23907 1jz6:C (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23908 1jz6:C (2.1) BS06 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23909 1jz6:D (2.1) BS01 GTZ 3.2.1.23 GO:0000287 ... P00722 11732897
    23910 1jz6:D (2.1) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23911 1jz6:D (2.1) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23912 1jz6:D (2.1) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23913 1jz6:D (2.1) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23914 1jz6:D (2.1) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23915 1jz7:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23916 1jz7:A (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23917 1jz7:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23918 1jz7:A (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23919 1jz7:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23920 1jz7:B (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23921 1jz7:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23922 1jz7:B (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23923 1jz7:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23924 1jz7:C (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23925 1jz7:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23926 1jz7:C (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23927 1jz7:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23928 1jz7:D (1.5) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897 MOAD: Ki~400mM
    23929 1jz7:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23930 1jz7:D (1.5) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23931 1jz8:A (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23932 1jz8:A (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23933 1jz8:A (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23934 1jz8:B (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23935 1jz8:B (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23936 1jz8:B (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23937 1jz8:C (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23938 1jz8:C (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23939 1jz8:C (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23940 1jz8:D (1.5) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23941 1jz8:D (1.5) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23942 1jz8:D (1.5) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23943 1jze:A (1.6) BS01 CU ? GO:0005507 ... P00282 11716717
    23944 1jze:A (1.6) BS02 DRU ? GO:0005507 ... P00282 11716717
    23945 1jze:A (1.6) BS03 LRU ? GO:0005507 ... P00282 11716717
    23946 1jzf:A (1.5) BS01 CU ? GO:0005507 ... P00282 11716717
    23947 1jzf:A (1.5) BS02 RTB ? GO:0005507 ... P00282 11716717
    23948 1jzf:A (1.5) BS03 IME ? GO:0005507 ... P00282 11716717
    23949 1jzg:A (1.4) BS01 CU1 ? GO:0005507 ... P00282 11716717
    23950 1jzg:A (1.4) BS02 RTB ? GO:0005507 ... P00282 11716717
    23951 1jzg:A (1.4) BS03 IMF ? GO:0005507 ... P00282 11716717
    23952 1jzh:A (1.7) BS01 CU ? GO:0005507 ... P00282 11716717
    23953 1jzh:A (1.7) BS02 RTA ? GO:0005507 ... P00282 11716717
    23954 1jzi:A (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    23955 1jzi:A (1.62) BS02 REP ? GO:0005507 ... P00282 11716717
    23956 1jzi:A (1.62) BS03 IME ? GO:0005507 ... P00282 11716717
    23957 1jzi:B (1.62) BS01 CU ? GO:0005507 ... P00282 11716717
    23958 1jzi:B (1.62) BS02 REP ? GO:0005507 ... P00282 11716717
    23959 1jzj:A (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    23960 1jzj:A (1.8) BS02 DOS ? GO:0005507 ... P00282 11716717
    23961 1jzj:A (1.8) BS03 IME ? GO:0005507 ... P00282 11716717
    23962 1jzj:B (1.8) BS01 CU ? GO:0005507 ... P00282 11716717
    23963 1jzj:B (1.8) BS02 DOS ? GO:0005507 ... P00282 11716717
    23964 1jzj:B (1.8) BS03 LOS ? GO:0005507 ... P00282 11716717
    23965 1jzk:A (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    23966 1jzk:A (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    23967 1jzk:B (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    23968 1jzk:C (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    23969 1jzk:C (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    23970 1jzk:D (2.2) BS01 HEM ? GO:0001666 ... P02213 11732898
    23971 1jzk:D (2.2) BS02 HEM ? GO:0001666 ... P02213 11732898
    23972 1jzl:A (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    23973 1jzl:A (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    23974 1jzl:B (1.5) BS01 HEM ? GO:0001666 ... P02213 11732898
    23975 1jzl:B (1.5) BS02 HEM ? GO:0001666 ... P02213 11732898
    23976 1jzm:A (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    23977 1jzm:A (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    23978 1jzm:B (1.9) BS01 HEM ? GO:0001666 ... P02213 11732898
    23979 1jzm:B (1.9) BS02 HEM ? GO:0001666 ... P02213 11732898
    23980 1jzn:A (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    23981 1jzn:A (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    23982 1jzn:B (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    23983 1jzn:B (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    23984 1jzn:C (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    23985 1jzn:C (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    23986 1jzn:D (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    23987 1jzn:D (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    23988 1jzn:E (2.2) BS01 GAL ? GO:0005576 ... P21963 15049685
    23989 1jzn:E (2.2) BS02 CA ? GO:0005576 ... P21963 15049685
    23990 1jzq:A (3.0) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    23991 1jzq:A (3.0) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    23992 1jzq:A (3.0) BS03 ILA 6.1.1.5 GO:0000049 ... P56690 11584022
    23993 1jzr:A (2.9) BS01 GSH 1.11.1.9
    1.8.4.-    		 GO:0003714 ... P23202 11695904
    23994 1jzr:C (2.9) BS01 GSH 1.11.1.9
    1.8.4.-    		 GO:0003714 ... P23202 11695904
    23995 1jzs:A (2.5) BS01 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    23996 1jzs:A (2.5) BS02 ZN 6.1.1.5 GO:0000049 ... P56690 11584022
    23997 1jzs:A (2.5) BS03 MRC 6.1.1.5 GO:0000049 ... P56690 11584022 MOAD: Ki=0.25uM
    PDBbind: -logKd/Ki=6.60, Ki=0.25uM
    23998 1jzw:A (1.76) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    23999 1jzw:A (1.76) BS02 SO3 1.20.4.1 GO:0008794 ... P08692 11709171
    24000 1jzx:K (3.1) BS01 rna ? GO:0003735 ... Q9RXK1 11677599
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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