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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23601 1jws:A (2.6) BS01 peptide ? GO:0006955 ... P01903 12962633
    23602 1jws:B (2.6) BS01 peptide ? GO:0006955 ... P01911 12962633
    23603 1jwt:A (2.5) BS01 BLI 3.4.21.5 GO:0004252 ... P00734 11720865 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    23604 1jwu:A (2.3) BS01 peptide ? GO:0006955 ... P01903 12962633
    23605 1jwu:B (2.3) BS01 peptide ? GO:0006955 ... P01911 12962633
    23606 1jwv:A (1.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 12079336
    23607 1jwy:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464
    11689422
    23608 1jwy:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464
    11689422
    23609 1jwy:A (2.3) BS03 ADP ? GO:0003774 ... P08799
    Q94464
    11689422
    23610 1jwy:A (2.3) BS04 GDP ? GO:0003774 ... P08799
    Q94464
    11689422
    23611 1jwz:A (1.8) BS01 105 3.5.2.6 GO:0005515 ... P62593 12079336
    23612 1jx0:A (2.85) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    23613 1jx1:C (2.3) BS01 DFV 5.5.1.6 GO:0009813 ... P28012 11955065
    23614 1jx2:A (2.3) BS01 BGC ? GO:0003774 ... P08799
    Q94464
    11689422
    23615 1jx2:A (2.3) BS02 MG ? GO:0003774 ... P08799
    Q94464
    11689422
    23616 1jx2:A (2.3) BS03 ADP ? GO:0003774 ... P08799
    Q94464
    11689422
    23617 1jx4:A (1.7) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23618 1jx4:A (1.7) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23619 1jx4:A (1.7) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23620 1jx4:A (1.7) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23621 1jx4:A (1.7) BS05 ADI 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23622 1jx6:A (1.5) BS01 AI2 ? GO:0005515 ... P54300 11823863
    23623 1jx9:B (2.28) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    23624 1jxa:A (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    23625 1jxa:B (3.1) BS01 G6Q 2.6.1.16 GO:0004360 ... P17169 11700065
    23626 1jxd:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    23627 1jxf:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11509552
    23628 1jxg:A (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    23629 1jxg:B (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    23630 1jxi:A (2.64) BS01 HMH 2.7.1.49
    2.7.4.7
    GO:0003824 ... P55882 11839308
    23631 1jxi:B (2.64) BS01 HMH 2.7.1.49
    2.7.4.7
    GO:0003824 ... P55882 11839308
    23632 1jxj:A (1.99) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    23633 1jxk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    23634 1jxl:A (2.1) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23635 1jxl:A (2.1) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23636 1jxl:A (2.1) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23637 1jxl:A (2.1) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23638 1jxl:A (2.1) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23639 1jxl:A (2.1) BS06 MG 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23640 1jxl:A (2.1) BS07 DG3 2.7.7.7 GO:0000287 ... Q97W02 11595188
    23641 1jxn:A (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    23642 1jxn:A (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    23643 1jxn:A (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    23644 1jxn:B (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    23645 1jxn:B (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    23646 1jxn:B (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    23647 1jxn:C (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    23648 1jxn:C (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    23649 1jxn:C (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    23650 1jxn:D (2.3) BS01 MFU ? GO:0030246 ... P22972 N/A
    23651 1jxn:D (2.3) BS02 MN ? GO:0030246 ... P22972 N/A
    23652 1jxn:D (2.3) BS03 CA ? GO:0030246 ... P22972 N/A
    23653 1jxp:A (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    23654 1jxp:A (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    23655 1jxp:B (2.2) BS01 peptide 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    23656 1jxp:B (2.2) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 9568891
    23657 1jxq:A (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    23658 1jxq:C (2.8) BS01 peptide 3.4.22.62 GO:0004197 ... P55211 11734640
    23659 1jxz:A (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23660 1jxz:A (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23661 1jxz:A (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23662 1jxz:B (1.9) BS01 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23663 1jxz:B (1.9) BS02 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23664 1jxz:B (1.9) BS03 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23665 1jxz:C (1.9) BS01 CA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23666 1jxz:C (1.9) BS02 BCA 3.8.1.7 GO:0003824 ... A5JTM5 11695894
    23667 1jy7:A (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    23668 1jy7:B (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    23669 1jy7:C (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    23670 1jy7:D (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    23671 1jy7:P (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    23672 1jy7:Q (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    23673 1jy7:R (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    23674 1jy7:S (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    23675 1jy7:U (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    23676 1jy7:V (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    23677 1jy7:W (3.2) BS01 HEM ? GO:0004601 ... P69905 12077435
    23678 1jy7:X (3.2) BS01 HEM ? GO:0004601 ... P68871 12077435
    23679 1jy8:A (2.5) BS01 ZN 4.6.1.12 GO:0005515 ... P62617 11829504
    23680 1jy8:A (2.5) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 11829504
    23681 1jy8:A (2.5) BS03 CDI 4.6.1.12 GO:0005515 ... P62617 11829504
    23682 1jyb:A (2.2) BS01 FE ? GO:0005506 ... P24931 12459910
    23683 1jyb:A (2.2) BS02 FE ? GO:0005506 ... P24931 12459910
    23684 1jyb:A (2.2) BS03 ZN ? GO:0005506 ... P24931 12459910
    23685 1jyc:A (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23686 1jyc:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23687 1jyc:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23688 1jyc:B (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23689 1jyc:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23690 1jyc:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23691 1jyc:C (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23692 1jyc:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23693 1jyc:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23694 1jyc:D (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23695 1jyc:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23696 1jyc:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23697 1jyi:A (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    23698 1jyi:A (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    23699 1jyi:A (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    23700 1jyi:B (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    23701 1jyi:B (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    23702 1jyi:B (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    23703 1jyi:C (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    23704 1jyi:C (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    23705 1jyi:C (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    23706 1jyi:D (2.75) BS01 peptide ? GO:0005537 ... P55915 10821862
    23707 1jyi:D (2.75) BS02 MN ? GO:0005537 ... P55915 10821862
    23708 1jyi:D (2.75) BS03 CA ? GO:0005537 ... P55915 10821862
    23709 1jyl:A (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23710 1jyl:A (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23711 1jyl:B (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23712 1jyl:B (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23713 1jyl:C (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23714 1jyl:C (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23715 1jyl:C (2.4) BS03 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23716 1jyl:D (2.4) BS01 MG 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23717 1jyl:D (2.4) BS02 CDC 2.7.7.15 GO:0009058 ... Q8DPI6 11706035
    23718 1jym:A (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23719 1jym:B (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23720 1jym:C (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23721 1jym:D (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23722 1jym:E (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23723 1jym:F (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23724 1jym:G (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23725 1jym:H (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23726 1jym:I (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23727 1jym:J (2.8) BS01 CO 3.5.1.88 GO:0042586 ... Q8I372 12005434
    23728 1jyn:A (1.8) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 11732897
    23729 1jyn:A (1.8) BS02 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23730 1jyn:A (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23731 1jyn:A (1.8) BS04 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23732 1jyn:A (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23733 1jyn:A (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23734 1jyn:A (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23735 1jyn:A (1.8) BS08 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23736 1jyn:B (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23737 1jyn:B (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23738 1jyn:B (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23739 1jyn:B (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23740 1jyn:B (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23741 1jyn:B (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23742 1jyn:B (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23743 1jyn:C (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23744 1jyn:C (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23745 1jyn:C (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23746 1jyn:C (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23747 1jyn:C (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23748 1jyn:C (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23749 1jyn:C (1.8) BS07 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23750 1jyn:D (1.8) BS01 GAL 3.2.1.23 GO:0000287 ... P00722 11732897
    23751 1jyn:D (1.8) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23752 1jyn:D (1.8) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23753 1jyn:D (1.8) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23754 1jyn:D (1.8) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23755 1jyn:D (1.8) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23756 1jys:A (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    23757 1jys:B (1.9) BS01 ADE 3.2.2.9 GO:0003824 ... P0AF12 11591349 MOAD: Ki=300uM
    PDBbind: -logKd/Ki=3.52, Ki=300uM
    23758 1jyv:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23759 1jyv:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23760 1jyv:A (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23761 1jyv:A (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23762 1jyv:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23763 1jyv:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23764 1jyv:B (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23765 1jyv:B (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23766 1jyv:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23767 1jyv:C (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23768 1jyv:C (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23769 1jyv:C (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23770 1jyv:D (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23771 1jyv:D (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23772 1jyv:D (1.75) BS03 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23773 1jyv:D (1.75) BS04 145 3.2.1.23 GO:0000287 ... P00722 11732897
    23774 1jyw:A (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    23775 1jyw:A (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23776 1jyw:A (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23777 1jyw:B (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    23778 1jyw:B (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23779 1jyw:B (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23780 1jyw:C (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    23781 1jyw:C (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23782 1jyw:C (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23783 1jyw:D (1.55) BS01 147 3.2.1.23 GO:0000287 ... P00722 11732897
    23784 1jyw:D (1.55) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23785 1jyw:D (1.55) BS03 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23786 1jyx:A (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23787 1jyx:A (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23788 1jyx:A (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23789 1jyx:A (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23790 1jyx:A (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23791 1jyx:A (1.75) BS06 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    23792 1jyx:A (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    23793 1jyx:B (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23794 1jyx:B (1.75) BS02 MG 3.2.1.23 GO:0000287 ... P00722 11732897
    23795 1jyx:B (1.75) BS03 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23796 1jyx:B (1.75) BS04 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23797 1jyx:B (1.75) BS05 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23798 1jyx:B (1.75) BS06 NA 3.2.1.23 GO:0000287 ... P00722 11732897
    23799 1jyx:B (1.75) BS07 IPT 3.2.1.23 GO:0000287 ... P00722 11732897 BindingDB: Ki=7.6e+4nM
    23800 1jyx:C (1.75) BS01 MG 3.2.1.23 GO:0000287 ... P00722 11732897

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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