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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23201 1jqy:N (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036
    23202 1jqy:O (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23203 1jqy:P (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23204 1jqy:P (2.14) BS02 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23205 1jqy:V (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23206 1jqy:W (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23207 1jqy:W (2.14) BS02 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23208 1jqy:X (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23209 1jqy:Y (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23210 1jqy:Z (2.14) BS01 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23211 1jqy:Z (2.14) BS02 A32 ? GO:0005576 ... P32890 11880036 MOAD: Ki=12uM
    23212 1jr0:D (1.3) BS01 A24 ? GO:0005515 ... P01556 11880036 MOAD: Kd=12uM
    23213 1jr0:E (1.3) BS01 A24 ? GO:0005515 ... P01556 11880036 MOAD: Kd=12uM
    23214 1jr0:F (1.3) BS01 A24 ? GO:0005515 ... P01556 11880036 MOAD: Kd=12uM
    23215 1jr0:G (1.3) BS01 A24 ? GO:0005515 ... P01556 11880036 MOAD: Kd=12uM
    23216 1jr0:G (1.3) BS02 A24 ? GO:0005515 ... P01556 11880036 MOAD: Kd=12uM
    23217 1jr0:H (1.3) BS01 A24 ? GO:0005515 ... P01556 11880036 MOAD: Kd=12uM
    23218 1jr1:A (2.6) BS01 IMP 1.1.1.205 GO:0000166 ... P12269 8681386
    23219 1jr1:A (2.6) BS02 MOA 1.1.1.205 GO:0000166 ... P12269 8681386 PDBbind: -logKd/Ki=8.22, Ki=6nM
    23220 1jr1:B (2.6) BS01 IMP 1.1.1.205 GO:0000166 ... P12269 8681386
    23221 1jr1:B (2.6) BS02 MOA 1.1.1.205 GO:0000166 ... P12269 8681386
    23222 1jr3:A (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 11525729
    23223 1jr3:B (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 11525729
    23224 1jr3:C (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 11525729
    23225 1jr3:E (2.7) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 11525729
    23226 1jr4:A (2.63) BS01 MG 2.1.1.6 GO:0000287 ... P22734 12404486
    23227 1jr4:A (2.63) BS02 CL4 2.1.1.6 GO:0000287 ... P22734 12404486
    23228 1jr7:A (2.0) BS01 FE2 1.14.11.64 GO:0005506 ... P76621 11910018
    23229 1jr8:A (1.5) BS01 FAD 1.8.3.2 GO:0016971 ... Q12284 11740506
    23230 1jr8:B (1.5) BS01 FAD 1.8.3.2 GO:0016971 ... Q12284 11740506
    23231 1jr9:A (2.8) BS01 MN 1.15.1.1 GO:0004784 ... Q7SIC3 12457847
    23232 1jra:A (2.0) BS01 FAD 1.8.3.2 GO:0016971 ... Q12284 11740506
    23233 1jra:B (2.0) BS01 FAD 1.8.3.2 GO:0016971 ... Q12284 11740506
    23234 1jra:C (2.0) BS01 FAD 1.8.3.2 GO:0016971 ... Q12284 11740506
    23235 1jra:D (2.0) BS01 FAD 1.8.3.2 GO:0016971 ... Q12284 11740506
    23236 1jrb:A (1.9) BS01 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23237 1jrb:B (1.9) BS01 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23238 1jrc:A (1.8) BS01 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23239 1jrc:B (1.8) BS01 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23240 1jro:A (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23241 1jro:A (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23242 1jro:A (2.7) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23243 1jro:B (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23244 1jro:C (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23245 1jro:C (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23246 1jro:C (2.7) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23247 1jro:D (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23248 1jro:E (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23249 1jro:E (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23250 1jro:E (2.7) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23251 1jro:F (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23252 1jro:G (2.7) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23253 1jro:G (2.7) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23254 1jro:G (2.7) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23255 1jro:H (2.7) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23256 1jrp:A (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23257 1jrp:A (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23258 1jrp:A (3.0) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23259 1jrp:B (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23260 1jrp:B (3.0) BS02 141 1.1.1.204 GO:0005506 ... O54051 11796116
    23261 1jrp:C (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23262 1jrp:C (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23263 1jrp:C (3.0) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23264 1jrp:D (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23265 1jrp:D (3.0) BS02 141 1.1.1.204 GO:0005506 ... O54051 11796116
    23266 1jrp:E (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23267 1jrp:E (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23268 1jrp:E (3.0) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23269 1jrp:F (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23270 1jrp:F (3.0) BS02 141 1.1.1.204 GO:0005506 ... O54051 11796116
    23271 1jrp:G (3.0) BS01 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23272 1jrp:G (3.0) BS02 FES 1.1.1.204 GO:0000166 ... O54050 11796116
    23273 1jrp:G (3.0) BS03 FAD 1.1.1.204 GO:0000166 ... O54050 11796116
    23274 1jrp:H (3.0) BS01 CA 1.1.1.204 GO:0005506 ... O54051 11796116
    23275 1jrp:H (3.0) BS02 141 1.1.1.204 GO:0005506 ... O54051 11796116
    23276 1jrq:A (2.15) BS01 CU 1.4.3.21 GO:0005507 ... P46883 11669617
    23277 1jrq:A (2.15) BS02 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    23278 1jrq:A (2.15) BS03 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    23279 1jrq:B (2.15) BS01 CU 1.4.3.21 GO:0005507 ... P46883 11669617
    23280 1jrq:B (2.15) BS02 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    23281 1jrq:B (2.15) BS03 CA 1.4.3.21 GO:0005507 ... P46883 11669617
    23282 1jrr:A (1.6) BS01 peptide ? GO:0001533 ... P05120 11546761
    23283 1jrs:A (1.8) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 8845765
    23284 1jrs:A (1.8) BS02 CA 3.4.21.4 GO:0004175 ... P00760 8845765
    23285 1jrt:A (1.7) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 8845765
    23286 1jrt:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 8845765
    23287 1jrx:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23288 1jrx:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23289 1jrx:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23290 1jrx:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23291 1jrx:A (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    23292 1jrx:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23293 1jrx:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23294 1jrx:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23295 1jrx:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23296 1jrx:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23297 1jrx:B (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    23298 1jrx:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23299 1jry:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23300 1jry:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23301 1jry:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23302 1jry:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23303 1jry:A (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    23304 1jry:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23305 1jry:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23306 1jry:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23307 1jry:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23308 1jry:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23309 1jry:B (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    23310 1jry:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23311 1jrz:A (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23312 1jrz:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23313 1jrz:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23314 1jrz:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23315 1jrz:A (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    23316 1jrz:A (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23317 1jrz:B (2.0) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23318 1jrz:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23319 1jrz:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23320 1jrz:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23321 1jrz:B (2.0) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 11591148
    23322 1jrz:B (2.0) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 11591148
    23323 1js1:X (2.0) BS01 PO4 2.1.3.11 GO:0004585 ... Q8A1E9 12095263
    23324 1js1:Y (2.0) BS01 PO4 2.1.3.11 GO:0004585 ... Q8A1E9 12095263
    23325 1js2:A (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    23326 1js2:B (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    23327 1js2:C (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    23328 1js2:D (1.9) BS01 SF4 ? GO:0009055 ... P00260 11802718
    23329 1js3:A (2.25) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    23330 1js3:A (2.25) BS02 142 4.1.1.28 GO:0004058 ... P80041 11685243
    23331 1js3:B (2.25) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    23332 1js3:B (2.25) BS02 142 4.1.1.28 GO:0004058 ... P80041 11685243
    23333 1js4:A (2.0) BS01 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    23334 1js4:A (2.0) BS02 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    23335 1js4:A (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    23336 1js4:A (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    23337 1js4:A (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    23338 1js4:B (2.0) BS01 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    23339 1js4:B (2.0) BS02 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    23340 1js4:B (2.0) BS03 BGC 3.2.1.4 GO:0004553 ... P26221 9334746
    23341 1js4:B (2.0) BS04 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    23342 1js4:B (2.0) BS05 CA 3.2.1.4 GO:0004553 ... P26221 9334746
    23343 1js6:A (2.6) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    23344 1js6:B (2.6) BS01 PLP 4.1.1.28 GO:0004058 ... P80041 11685243
    23345 1js8:A (2.3) BS01 MAN ? GO:0016491 ... O61363 9614947
    23346 1js8:A (2.3) BS02 MAN ? GO:0016491 ... O61363 9614947
    23347 1js8:A (2.3) BS03 CUO ? GO:0016491 ... O61363 9614947
    23348 1js8:B (2.3) BS01 MAN ? GO:0016491 ... O61363 9614947
    23349 1js8:B (2.3) BS02 MAN ? GO:0016491 ... O61363 9614947
    23350 1js8:B (2.3) BS03 CUO ? GO:0016491 ... O61363 9614947
    23351 1jsa:A (-1.00) BS01 CA ? GO:0001750 ... P21457 9296500
    23352 1jsa:A (-1.00) BS02 CA ? GO:0001750 ... P21457 9296500
    23353 1jsc:A (2.6) BS01 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    23354 1jsc:A (2.6) BS02 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    23355 1jsc:A (2.6) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    23356 1jsc:A (2.6) BS04 FAD 2.2.1.6 GO:0000287 ... P07342 11902841
    23357 1jsc:A (2.6) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    23358 1jsc:B (2.6) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    23359 1jsc:B (2.6) BS02 MG 2.2.1.6 GO:0000287 ... P07342 11902841
    23360 1jsc:B (2.6) BS03 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    23361 1jsc:B (2.6) BS04 2HP 2.2.1.6 GO:0000287 ... P07342 11902841
    23362 1jsc:B (2.6) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 11902841
    23363 1jsc:B (2.6) BS06 FAD 2.2.1.6 GO:0000287 ... P07342 11902841
    23364 1jse:A (1.12) BS01 POL 3.2.1.17 GO:0003796 ... P00703 9517539
    23365 1jsh:A (2.4) BS01 GAL ? GO:0019031 ... Q91CD4 11562490
    23366 1jsh:A (2.4) BS02 SIA ? GO:0019031 ... Q91CD4 11562490
    23367 1jsi:A (2.4) BS01 GLC ? GO:0019031 ... Q91CD4 11562490
    23368 1jsi:A (2.4) BS02 GAL ? GO:0019031 ... Q91CD4 11562490
    23369 1jsi:A (2.4) BS03 SIA ? GO:0019031 ... Q91CD4 11562490
    23370 1jsl:A (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23371 1jsl:B (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23372 1jsl:C (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23373 1jsl:D (1.7) BS01 DDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23374 1jsn:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    23375 1jso:A (2.4) BS01 SIA ? GO:0019031 ... A5Z226 11562490
    23376 1jsp:B (-1.00) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 14759370
    23377 1jsr:A (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23378 1jsr:B (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23379 1jsr:C (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23380 1jsr:D (1.7) BS01 LDO 3.5.1.1 GO:0004067 ... P06608 11755201
    23381 1jst:A (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    23382 1jst:A (2.6) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 8756328
    23383 1jst:C (2.6) BS01 MN 2.7.11.22 GO:0000082 ... P24941 8756328
    23384 1jst:C (2.6) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 8756328
    23385 1jsv:A (1.96) BS01 U55 2.7.11.22 GO:0000082 ... P24941 11604388 PDBbind: -logKd/Ki=5.70, Ki=2uM
    BindingDB: IC50=1900nM
    23386 1jsz:A (1.93) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    23387 1jsz:A (1.93) BS02 NDM 2.1.1.57 GO:0003723 ... P07617 12056899
    23388 1jt0:A (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23389 1jt0:A (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23390 1jt0:B (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23391 1jt0:B (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23392 1jt0:C (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23393 1jt0:C (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23394 1jt0:D (2.9) BS01 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23395 1jt0:D (2.9) BS02 dna ? GO:0003677 ... P0A0N4 11867549 PDBbind: Kd=49nM
    23396 1jt6:A (2.54) BS01 DEQ ? GO:0003677 ... P0A0N4 11739955
    23397 1jt6:B (2.54) BS01 DEQ ? GO:0003677 ... P0A0N4 11739955
    23398 1jtb:A (-1.00) BS01 COA ? GO:0006869 ... P07597 9032083
    23399 1jtb:A (-1.00) BS02 PLM ? GO:0006869 ... P07597 9032083
    23400 1jtd:B (2.3) BS01 CA ? GO:0005737 ... O87916 11573088

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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