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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22401 1jfh:A (2.03) BS05 GLC 3.2.1.1 GO:0003824 ... P00690 9385631
    22402 1jfh:A (2.03) BS06 CA 3.2.1.1 GO:0003824 ... P00690 9385631
    22403 1jfi:B (2.62) BS01 dna ? GO:0000122 ... Q01658 11461703
    22404 1jfi:B (2.62) BS02 dna ? GO:0000122 ... Q01658 11461703
    22405 1jfi:C (2.62) BS01 dna ? GO:0003677 ... P20226 11461703
    22406 1jfi:C (2.62) BS02 dna ? GO:0003677 ... P20226 11461703
    22407 1jfk:A (-1.00) BS01 CA ? GO:0001891 ... P38505 11724551
    22408 1jfk:A (-1.00) BS02 CA ? GO:0001891 ... P38505 11724551
    22409 1jfk:A (-1.00) BS03 CA ? GO:0001891 ... P38505 11724551
    22410 1jfk:A (-1.00) BS04 CA ? GO:0001891 ... P38505 11724551
    22411 1jfp:A (-1.00) BS01 RET ? GO:0000139 ... P02699 11570894
    22412 1jfs:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2.2nM
    22413 1jfs:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    22414 1jft:A (2.5) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=0.7nM
    22415 1jft:A (2.5) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    22416 1jfz:A (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    22417 1jfz:B (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    22418 1jfz:C (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    22419 1jfz:D (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    22420 1jg0:A (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    22421 1jg0:A (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    22422 1jg0:B (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    22423 1jg0:B (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    22424 1jg1:A (1.2) BS01 SAH 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    22425 1jg2:A (1.5) BS01 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    22426 1jg3:A (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    22427 1jg3:A (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    22428 1jg3:B (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    22429 1jg3:B (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    22430 1jg4:A (1.5) BS01 SAM 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    22431 1jg6:A (1.9) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    22432 1jg7:A (1.65) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    22433 1jg8:A (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    22434 1jg8:B (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    22435 1jg8:B (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    22436 1jg8:C (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    22437 1jg8:D (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    22438 1jg8:D (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    22439 1jg9:A (1.66) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    22440 1jg9:A (1.66) BS02 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    22441 1jgc:A (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    22442 1jgc:B (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    22443 1jgc:C (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    22444 1jgg:A (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    22445 1jgg:A (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    22446 1jgg:B (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    22447 1jgg:B (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    22448 1jgi:A (2.0) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    22449 1jgi:A (2.0) BS02 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    22450 1jgj:A (2.4) BS01 RET ? GO:0005216 ... P42196 11452084
    22451 1jgm:A (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    22452 1jgm:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    22453 1jgm:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    22454 1jgm:B (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    22455 1jgm:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    22456 1jgm:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    22457 1jgn:A (-1.00) BS01 peptide ? GO:0003723 ... P11940 14685257
    22458 1jgo:J (5.6) BS01 rna ? GO:0000028 ... P17291 11511350
    22459 1jgp:J (7.0) BS01 rna ? GO:0000028 ... P17291 11511350
    22460 1jgq:J (5.0) BS01 rna ? GO:0000028 ... P17291 11511350
    22461 1jgt:A (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    22462 1jgt:A (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    22463 1jgt:A (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    22464 1jgt:B (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    22465 1jgt:B (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    22466 1jgt:B (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    22467 1jgw:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    22468 1jgw:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    22469 1jgw:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    22470 1jgw:L (2.8) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    22471 1jgw:L (2.8) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    22472 1jgw:L (2.8) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    22473 1jgw:L (2.8) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    22474 1jgw:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    22475 1jgw:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    22476 1jgw:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    22477 1jgw:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    22478 1jgw:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    22479 1jgw:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    22480 1jgw:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    22481 1jgw:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    22482 1jgx:L (3.01) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    22483 1jgx:L (3.01) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    22484 1jgx:L (3.01) BS03 BCL ? GO:0009772 ... P0C0Y8 11526320
    22485 1jgx:L (3.01) BS04 BPH ? GO:0009772 ... P0C0Y8 11526320
    22486 1jgx:L (3.01) BS05 FE ? GO:0009772 ... P0C0Y8 11526320
    22487 1jgx:L (3.01) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    22488 1jgx:M (3.01) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    22489 1jgx:M (3.01) BS02 BCL ? GO:0009772 ... P0C0Y9 11526320
    22490 1jgx:M (3.01) BS03 BPH ? GO:0009772 ... P0C0Y9 11526320
    22491 1jgx:M (3.01) BS04 FE ? GO:0009772 ... P0C0Y9 11526320
    22492 1jgx:M (3.01) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    22493 1jgx:M (3.01) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    22494 1jgx:M (3.01) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    22495 1jgx:M (3.01) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    22496 1jgy:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    22497 1jgy:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    22498 1jgy:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    22499 1jgy:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    22500 1jgy:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    22501 1jgy:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    22502 1jgy:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    22503 1jgy:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    22504 1jgy:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    22505 1jgy:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    22506 1jgy:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    22507 1jgy:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    22508 1jgy:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    22509 1jgy:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    22510 1jgy:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    22511 1jgz:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    22512 1jgz:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    22513 1jgz:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    22514 1jgz:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    22515 1jgz:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    22516 1jgz:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    22517 1jgz:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    22518 1jgz:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    22519 1jgz:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    22520 1jgz:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    22521 1jgz:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    22522 1jgz:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    22523 1jgz:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    22524 1jgz:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    22525 1jgz:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    22526 1jh0:L (3.5) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    22527 1jh0:L (3.5) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    22528 1jh0:L (3.5) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    22529 1jh0:L (3.5) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    22530 1jh0:L (3.5) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    22531 1jh0:L (3.5) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    22532 1jh0:M (3.5) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    22533 1jh0:M (3.5) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    22534 1jh0:M (3.5) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    22535 1jh0:M (3.5) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    22536 1jh0:M (3.5) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    22537 1jh0:M (3.5) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    22538 1jh0:M (3.5) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    22539 1jh0:M (3.5) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    22540 1jh1:A (2.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    22541 1jh1:A (2.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    22542 1jh1:A (2.7) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    22543 1jh1:A (2.7) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    22544 1jh1:A (2.7) BS05 JST 3.4.24.34 GO:0004222 ... P22894 11563922 PDBbind: -logKd/Ki=4.39, Ki=41uM
    22545 1jh4:A (-1.00) BS01 peptide ? GO:0003723 ... P11940 14685257
    22546 1jh7:A (2.4) BS01 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    22547 1jh7:A (2.4) BS02 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    22548 1jh8:A (1.8) BS01 ADE 2.4.2.21 GO:0000166 ... Q05603 11441022
    22549 1jh9:A (2.55) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2nM
    22550 1jh9:A (2.55) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    22551 1jha:A (2.0) BS01 AAM 2.4.2.21 GO:0000166 ... Q05603 11441022
    22552 1jha:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22553 1jhd:A (1.7) BS01 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    22554 1jhd:A (1.7) BS02 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    22555 1jhd:A (1.7) BS03 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    22556 1jhg:A (1.3) BS01 TRP ? GO:0003677 ... P0A881 8946848
    22557 1jhm:A (2.2) BS01 5MB 2.4.2.21 GO:0000166 ... Q05603 11441022
    22558 1jhn:A (2.9) BS01 CA ? GO:0005509 ... P24643 11583625
    22559 1jho:A (2.0) BS01 RMB 2.4.2.21 GO:0000166 ... Q05603 11441022
    22560 1jho:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22561 1jhp:A (2.2) BS01 5OB 2.4.2.21 GO:0000166 ... Q05603 11441022
    22562 1jhq:A (2.0) BS01 PMO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22563 1jhq:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22564 1jhr:A (2.0) BS01 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22565 1jhr:A (2.0) BS02 P2P 2.4.2.21 GO:0000166 ... Q05603 11441022
    22566 1jhu:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    22567 1jhv:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    22568 1jhv:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22569 1jhx:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    22570 1jhy:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    22571 1jhy:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    22572 1ji0:A (2.0) BS01 ATP ? GO:0005524 ... Q9X0M3 N/A
    22573 1ji1:A (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    22574 1ji1:A (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    22575 1ji1:A (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    22576 1ji1:B (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    22577 1ji1:B (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    22578 1ji1:B (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    22579 1ji2:A (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    22580 1ji2:B (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    22581 1ji3:A (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    22582 1ji3:A (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    22583 1ji3:B (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    22584 1ji3:B (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    22585 1ji4:A (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22586 1ji4:A (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22587 1ji4:B (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22588 1ji4:B (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22589 1ji4:C (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22590 1ji4:C (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22591 1ji4:D (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22592 1ji4:D (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22593 1ji4:E (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22594 1ji4:E (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22595 1ji4:F (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22596 1ji4:F (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22597 1ji4:G (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22598 1ji4:G (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22599 1ji4:H (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    22600 1ji4:H (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218