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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22001 1jb0:A (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22002 1jb0:A (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22003 1jb0:A (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22004 1jb0:A (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22005 1jb0:A (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22006 1jb0:A (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22007 1jb0:A (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22008 1jb0:A (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22009 1jb0:A (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22010 1jb0:A (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22011 1jb0:A (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22012 1jb0:A (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22013 1jb0:A (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22014 1jb0:A (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22015 1jb0:A (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22016 1jb0:A (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22017 1jb0:A (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22018 1jb0:A (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22019 1jb0:A (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22020 1jb0:A (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22021 1jb0:A (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22022 1jb0:A (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22023 1jb0:A (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22024 1jb0:A (2.5) BS47 PQN 1.97.1.12 GO:0000287 ... P0A405 11418848
    22025 1jb0:A (2.5) BS48 SF4 1.97.1.12 GO:0000287 ... P0A405 11418848
    22026 1jb0:A (2.5) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22027 1jb0:A (2.5) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22028 1jb0:A (2.5) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22029 1jb0:A (2.5) BS52 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    22030 1jb0:B (2.5) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 11418848
    22031 1jb0:B (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22032 1jb0:B (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22033 1jb0:B (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22034 1jb0:B (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22035 1jb0:B (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22036 1jb0:B (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22037 1jb0:B (2.5) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 11418848
    22038 1jb0:B (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22039 1jb0:B (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22040 1jb0:B (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22041 1jb0:B (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22042 1jb0:B (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22043 1jb0:B (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22044 1jb0:B (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22045 1jb0:B (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22046 1jb0:B (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22047 1jb0:B (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22048 1jb0:B (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22049 1jb0:B (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22050 1jb0:B (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22051 1jb0:B (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22052 1jb0:B (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22053 1jb0:B (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22054 1jb0:B (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22055 1jb0:B (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22056 1jb0:B (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22057 1jb0:B (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22058 1jb0:B (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22059 1jb0:B (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22060 1jb0:B (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22061 1jb0:B (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22062 1jb0:B (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22063 1jb0:B (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22064 1jb0:B (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22065 1jb0:B (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22066 1jb0:B (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22067 1jb0:B (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22068 1jb0:B (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22069 1jb0:B (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22070 1jb0:B (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22071 1jb0:B (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22072 1jb0:B (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22073 1jb0:B (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22074 1jb0:B (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22075 1jb0:B (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22076 1jb0:B (2.5) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22077 1jb0:B (2.5) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    22078 1jb0:B (2.5) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 11418848
    22079 1jb0:C (2.5) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    22080 1jb0:C (2.5) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    22081 1jb0:F (2.5) BS01 CLA ? GO:0009522 ... P0A401 11418848
    22082 1jb0:F (2.5) BS02 CLA ? GO:0009522 ... P0A401 11418848
    22083 1jb0:F (2.5) BS03 CLA ? GO:0009522 ... P0A401 11418848
    22084 1jb0:F (2.5) BS04 CLA ? GO:0009522 ... P0A401 11418848
    22085 1jb0:I (2.5) BS01 CLA ? GO:0009522 ... P0A427 11418848
    22086 1jb0:I (2.5) BS02 CLA ? GO:0009522 ... P0A427 11418848
    22087 1jb0:I (2.5) BS03 CLA ? GO:0009522 ... P0A427 11418848
    22088 1jb0:I (2.5) BS04 CLA ? GO:0009522 ... P0A427 11418848
    22089 1jb0:J (2.5) BS01 CLA ? GO:0009522 ... P0A429 11418848
    22090 1jb0:J (2.5) BS02 CLA ? GO:0009522 ... P0A429 11418848
    22091 1jb0:J (2.5) BS03 CLA ? GO:0009522 ... P0A429 11418848
    22092 1jb0:J (2.5) BS04 CLA ? GO:0009522 ... P0A429 11418848
    22093 1jb0:J (2.5) BS05 CLA ? GO:0009522 ... P0A429 11418848
    22094 1jb0:J (2.5) BS06 CLA ? GO:0009522 ... P0A429 11418848
    22095 1jb0:K (2.5) BS01 CLA ? GO:0009522 ... P0A425 11418848
    22096 1jb0:L (2.5) BS01 CLA ? GO:0009522 ... Q8DGB4 11418848
    22097 1jb0:L (2.5) BS02 CLA ? GO:0009522 ... Q8DGB4 11418848
    22098 1jb0:L (2.5) BS03 CLA ? GO:0009522 ... Q8DGB4 11418848
    22099 1jb0:L (2.5) BS04 CA ? GO:0009522 ... Q8DGB4 11418848
    22100 1jb0:L (2.5) BS05 CLA ? GO:0009522 ... Q8DGB4 11418848
    22101 1jb0:L (2.5) BS06 CLA ? GO:0009522 ... Q8DGB4 11418848
    22102 1jb0:L (2.5) BS07 CLA ? GO:0009522 ... Q8DGB4 11418848
    22103 1jb0:M (2.5) BS01 CLA ? GO:0009522 ... P0A403 11418848
    22104 1jb0:M (2.5) BS02 CLA ? GO:0009522 ... P0A403 11418848
    22105 1jb7:A (1.86) BS01 dna ? GO:0000723 ... P29549 11428895
    22106 1jb7:A (1.86) BS02 dna ? GO:0000723 ... P29549 11428895
    22107 1jb7:B (1.86) BS01 dna ? GO:0000781 ... P16458 11428895
    22108 1jb9:A (1.7) BS01 FAD 1.18.1.2 GO:0000166 ... Q41736 11724563
    22109 1jba:A (-1.00) BS01 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    22110 1jba:A (-1.00) BS02 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    22111 1jba:A (-1.00) BS03 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    22112 1jbc:A (1.15) BS01 MN ? GO:0030246 ... P02866 15299577
    22113 1jbc:A (1.15) BS02 CA ? GO:0030246 ... P02866 15299577
    22114 1jbd:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11814338
    22115 1jbp:E (2.2) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 8003955
    22116 1jbp:E (2.2) BS02 ADP 2.7.11.11 GO:0000122 ... P05132 8003955
    22117 1jbq:A (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22118 1jbq:A (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22119 1jbq:B (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22120 1jbq:B (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22121 1jbq:C (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22122 1jbq:C (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22123 1jbq:D (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22124 1jbq:D (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22125 1jbq:E (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22126 1jbq:E (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22127 1jbq:F (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    22128 1jbq:F (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    22129 1jbr:A (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    22130 1jbr:B (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    22131 1jbs:A (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22132 1jbs:B (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22133 1jbt:A (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22134 1jbt:B (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    22135 1jbu:H (2.0) BS01 peptide 3.4.21.21 GO:0004252 ... P08709 11470437
    22136 1jbv:A (1.95) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    22137 1jbv:A (1.95) BS02 ACP 6.3.2.17 GO:0004326 ... P15925 11501996
    22138 1jbw:A (1.85) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    22139 1jbw:A (1.85) BS02 ACQ 6.3.2.17 GO:0004326 ... P15925 11501996
    22140 1jbw:A (1.85) BS03 TMF 6.3.2.17 GO:0004326 ... P15925 11501996
    22141 1jbz:A (1.5) BS01 MG ? GO:0003674 ... P42212 12501176
    22142 1jc2:A (-1.00) BS01 CA ? GO:0005509 ... P02588 11513585
    22143 1jc2:A (-1.00) BS02 CA ? GO:0005509 ... P02588 11513585
    22144 1jc9:A (2.01) BS01 CA ? GO:0005576 ... Q9U8W8 11707569
    22145 1jca:B (2.5) BS01 peptide ? GO:0005179 ... P01308 11779231
    22146 1jca:B (2.5) BS02 peptide ? GO:0005179 ... P01308 11779231
    22147 1jcc:A (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    22148 1jcc:B (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    22149 1jcc:C (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    22150 1jcg:A (3.1) BS01 ANP ? GO:0000902 ... Q9WZ57 11544518
    22151 1jci:A (1.9) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11851415
    22152 1jcj:A (1.1) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    22153 1jcj:B (1.1) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    22154 1jcl:A (1.05) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    22155 1jcl:B (1.05) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    22156 1jcm:P (2.1) BS01 PO4 4.1.1.48
    5.3.1.24
    GO:0004425 ... P00909 11856350
    22157 1jcm:P (2.1) BS02 137 4.1.1.48
    5.3.1.24
    GO:0004425 ... P00909 11856350
    22158 1jcn:A (2.5) BS01 CPR 1.1.1.205 GO:0000166 ... P20839 N/A
    22159 1jcn:B (2.5) BS01 CPR 1.1.1.205 GO:0000166 ... P20839 N/A
    22160 1jco:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 11524020
    22161 1jcq:A (2.3) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658
    22162 1jcq:A (2.3) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658 BindingDB: Kd=2.0nM
    22163 1jcq:A (2.3) BS03 739 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658
    22164 1jcq:B (2.3) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 11687658
    22165 1jcq:B (2.3) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 11687658
    22166 1jcq:B (2.3) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 11687658
    22167 1jcq:B (2.3) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 11687658
    22168 1jcq:B (2.3) BS05 739 2.5.1.58 GO:0003824 ... P49356 11687658
    22169 1jcr:A (2.0) BS01 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    22170 1jcr:B (2.0) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 11687658
    22171 1jcr:B (2.0) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    22172 1jcr:B (2.0) BS03 FPP 2.5.1.58 GO:0003824 ... Q02293 11687658
    22173 1jcs:A (2.2) BS01 peptide 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    22174 1jcs:A (2.2) BS02 FII 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    22175 1jcs:B (2.2) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 11687658
    22176 1jcs:B (2.2) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    22177 1jcs:B (2.2) BS03 FII 2.5.1.58 GO:0003824 ... Q02293 11687658
    22178 1jct:A (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    22179 1jct:A (2.75) BS02 GKR 4.2.1.40 GO:0000287 ... P0AES2 11513584
    22180 1jct:B (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    22181 1jct:B (2.75) BS02 GKR 4.2.1.40 GO:0000287 ... P0AES2 11513584
    22182 1jcv:A (1.55) BS01 CU 1.15.1.1 GO:0004784 ... P00445 8652572
    22183 1jcv:A (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 8652572
    22184 1jcx:A (1.8) BS01 PAI 2.5.1.55 GO:0005737 ... O66496 11747443 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    22185 1jcx:B (1.8) BS01 PAI 2.5.1.55 GO:0005737 ... O66496 11747443 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    22186 1jcy:A (1.9) BS01 R5P 2.5.1.55 GO:0005737 ... O66496 11747443
    22187 1jcy:A (1.9) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 11747443
    22188 1jcy:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11747443
    22189 1jcz:A (1.55) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    22190 1jcz:B (1.55) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    22191 1jd0:A (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    22192 1jd0:A (1.5) BS02 AZM 4.2.1.1 GO:0004089 ... O43570 11493685 PDBbind: -logKd/Ki=8.24, Ki=5.7nM
    BindingDB: Ki=5.7nM, Kd=130nM, IC50=60nM
    22193 1jd0:B (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 11493685
    22194 1jd0:B (1.5) BS02 AZM 4.2.1.1 GO:0004089 ... O43570 11493685 BindingDB: Ki=5.7nM, Kd=130nM, IC50=60nM
    22195 1jd2:G (3.0) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11493007
    22196 1jd2:H (3.0) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 11493007
    22197 1jd2:H (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043 11493007
    22198 1jd2:I (3.0) BS01 peptide 3.4.99.46 GO:0000502 ... P25451 11493007
    22199 1jd2:I (3.0) BS02 MG 3.4.99.46 GO:0000502 ... P25451 11493007
    22200 1jd2:K (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11493007

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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