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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21601 1j3j:A (2.3) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    21602 1j3j:B (2.3) BS01 CP6 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428 MOAD: Ki=9.8nM
    BindingDB: Ki=0.6nM, IC50=30900nM
    21603 1j3j:B (2.3) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    21604 1j3j:C (2.3) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21605 1j3j:C (2.3) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21606 1j3j:D (2.3) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21607 1j3j:D (2.3) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21608 1j3k:A (2.1) BS01 WRA 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428 MOAD: Ki=0.037nM
    BindingDB: IC50=0.570000nM, Ki=0.5nM
    21609 1j3k:A (2.1) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    21610 1j3k:B (2.1) BS01 WRA 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428 MOAD: Ki=0.037nM
    BindingDB: IC50=0.570000nM, Ki=0.5nM
    21611 1j3k:B (2.1) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... P13922 12704428
    21612 1j3k:C (2.1) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21613 1j3k:C (2.1) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21614 1j3k:D (2.1) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21615 1j3k:D (2.1) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0004799 ... P13922 12704428
    21616 1j3p:A (2.02) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    21617 1j3q:A (1.85) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    21618 1j3q:B (1.85) BS01 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    21619 1j3r:A (2.18) BS01 6PG 5.3.1.9 GO:0004347 ... P84140 N/A
    21620 1j3r:A (2.18) BS02 FE 5.3.1.9 GO:0004347 ... P84140 N/A
    21621 1j3r:B (2.18) BS01 6PG 5.3.1.9 GO:0004347 ... P84140 N/A
    21622 1j3s:A (-1.00) BS01 HEC ? GO:0005515 ... P99999 N/A
    21623 1j3y:A (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    21624 1j3y:B (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    21625 1j3y:C (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    21626 1j3y:D (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    21627 1j3y:E (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    21628 1j3y:F (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    21629 1j3y:G (1.55) BS01 HEM ? GO:0004601 ... P69905 12773618
    21630 1j3y:H (1.55) BS01 HNI ? GO:0004601 ... P68871 12773618
    21631 1j3z:A (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    21632 1j3z:B (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    21633 1j3z:C (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    21634 1j3z:D (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    21635 1j3z:E (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    21636 1j3z:F (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    21637 1j3z:G (1.6) BS01 HEM ? GO:0004601 ... P69905 12773618
    21638 1j3z:H (1.6) BS01 HNI ? GO:0004601 ... P68871 12773618
    21639 1j40:A (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21640 1j40:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21641 1j40:C (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21642 1j40:C (1.45) BS02 HNI ? GO:0004601 ... P69905 12773618
    21643 1j40:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21644 1j40:E (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21645 1j40:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21646 1j40:G (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21647 1j40:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21648 1j41:A (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21649 1j41:B (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21650 1j41:C (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21651 1j41:C (1.45) BS02 HNI ? GO:0004601 ... P69905 12773618
    21652 1j41:D (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21653 1j41:E (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21654 1j41:F (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21655 1j41:G (1.45) BS01 HNI ? GO:0004601 ... P69905 12773618
    21656 1j41:H (1.45) BS01 HEM ? GO:0004601 ... P68871 12773618
    21657 1j49:A (2.2) BS01 NAD 1.1.1.28 GO:0008720 ... P26297 12054772
    21658 1j49:B (2.2) BS01 NAD 1.1.1.28 GO:0008720 ... P26297 12054772
    21659 1j4h:A (1.8) BS01 SUB 5.2.1.8 GO:0000413 ... P62942 14581219
    21660 1j4i:A (1.8) BS01 TST 5.2.1.8 GO:0000413 ... P62942 14581219
    21661 1j4j:A (2.55) BS01 ACO 2.3.1.- GO:0016746 ... P16966 12527305
    21662 1j4j:B (2.55) BS01 ACO 2.3.1.- GO:0016746 ... P16966 12527305
    21663 1j4r:A (1.8) BS01 001 5.2.1.8 GO:0000413 ... P62942 11735566 MOAD: Ki=0.019uM
    PDBbind: -logKd/Ki=7.72, Ki=0.019uM
    21664 1j4r:B (1.8) BS01 001 5.2.1.8 GO:0000413 ... P62942 11735566 MOAD: Ki=0.019uM
    21665 1j4r:D (1.8) BS01 001 5.2.1.8 GO:0000413 ... P62942 11735566 MOAD: Ki=0.019uM
    21666 1j4u:A (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    21667 1j4u:B (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    21668 1j4u:C (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    21669 1j4u:D (2.9) BS01 MMA ? GO:0030246 ... Q7M1T4 11902840
    21670 1j4w:A (-1.00) BS01 dna ? GO:0003676 ... Q96AE4 11875576
    21671 1j4x:A (2.75) BS01 peptide 3.1.3.16
    3.1.3.48
    GO:0001772 ... P51452 11863439
    21672 1j51:A (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    21673 1j51:A (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    21674 1j51:B (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    21675 1j51:B (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    21676 1j51:C (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    21677 1j51:C (2.2) BS02 TCZ 1.14.15.1 GO:0004497 ... P00183 12114516
    21678 1j51:D (2.2) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12114516
    21679 1j52:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    21680 1j53:A (1.8) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    21681 1j53:A (1.8) BS02 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    21682 1j53:A (1.8) BS03 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    21683 1j54:A (1.7) BS01 MN 2.7.7.7 GO:0003676 ... P03007 11937058
    21684 1j54:A (1.7) BS02 TMP 2.7.7.7 GO:0003676 ... P03007 11937058
    21685 1j55:A (2.0) BS01 CA ? GO:0000287 ... P25815 12507480
    21686 1j55:A (2.0) BS02 CA ? GO:0000287 ... P25815 12507480
    21687 1j56:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    21688 1j58:A (1.75) BS01 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    21689 1j58:A (1.75) BS02 MN 4.1.1.2 GO:0005737 ... O34714 12056897
    21690 1j59:A (2.5) BS01 dna ? GO:0003677 ... P0ACJ8 8757802
    21691 1j59:A (2.5) BS02 dna ? GO:0003677 ... P0ACJ8 8757802
    21692 1j59:A (2.5) BS03 CMP ? GO:0003677 ... P0ACJ8 8757802
    21693 1j59:B (2.5) BS01 dna ? GO:0003677 ... P0ACJ8 8757802
    21694 1j59:B (2.5) BS02 dna ? GO:0003677 ... P0ACJ8 8757802
    21695 1j59:B (2.5) BS03 CMP ? GO:0003677 ... P0ACJ8 8757802
    21696 1j59:B (2.5) BS04 CMP ? GO:0003677 ... P0ACJ8 8757802
    21697 1j5a:K (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 11677599 PDBbind: Kd=10nM
    21698 1j5a:L (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 11677599 PDBbind: Kd=10nM
    21699 1j5a:M (3.5) BS01 rna ? GO:0003735 ... P49228 11677599 PDBbind: Kd=10nM
    21700 1j5c:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    21701 1j5d:A (-1.00) BS01 CU ? GO:0005507 ... P21697 11456890
    21702 1j5e:B (3.05) BS01 rna ? GO:0003735 ... P80371 11014182
    21703 1j5e:C (3.05) BS01 rna ? GO:0003676 ... P80372 11014182
    21704 1j5e:D (3.05) BS01 rna ? GO:0003723 ... P80373 11014182
    21705 1j5e:E (3.05) BS01 rna ? GO:0003723 ... Q5SHQ5 11014182
    21706 1j5e:F (3.05) BS01 rna ? GO:0003735 ... Q5SLP8 11014182
    21707 1j5e:G (3.05) BS01 rna ? GO:0000028 ... P17291 11014182
    21708 1j5e:H (3.05) BS01 rna ? GO:0003735 ... P0DOY9 11014182
    21709 1j5e:I (3.05) BS01 rna ? GO:0000049 ... P80374 11014182
    21710 1j5e:J (3.05) BS01 rna ? GO:0000049 ... Q5SHN7 11014182
    21711 1j5e:K (3.05) BS01 rna ? GO:0003735 ... P80376 11014182
    21712 1j5e:L (3.05) BS01 rna ? GO:0000049 ... Q5SHN3 11014182
    21713 1j5e:M (3.05) BS01 rna ? GO:0000049 ... P80377 11014182
    21714 1j5e:N (3.05) BS01 rna ? GO:0003735 ... P0DOY6 11014182
    21715 1j5e:N (3.05) BS02 ZN ? GO:0003735 ... P0DOY6 11014182
    21716 1j5e:O (3.05) BS01 rna ? GO:0003735 ... Q5SJ76 11014182
    21717 1j5e:P (3.05) BS01 rna ? GO:0003735 ... Q5SJH3 11014182
    21718 1j5e:Q (3.05) BS01 rna ? GO:0003735 ... P0DOY7 11014182
    21719 1j5e:R (3.05) BS01 rna ? GO:0003735 ... Q5SLQ0 11014182
    21720 1j5e:S (3.05) BS01 rna ? GO:0000028 ... Q5SHP2 11014182
    21721 1j5e:T (3.05) BS01 rna ? GO:0003723 ... P80380 11014182
    21722 1j5i:A (-1.00) BS01 NCZ ? GO:0003677 ... P0A3R9 12269815 PDBbind: -logKd/Ki=3.64, Kd=230uM
    21723 1j5k:A (-1.00) BS01 dna ? GO:0003676 ... P61978 12093748 PDBbind: Kd=3uM
    21724 1j5n:A (-1.00) BS01 dna ? GO:0001195 ... P11632 12381320 PDBbind: Kd=7.5nM
    21725 1j5n:A (-1.00) BS02 dna ? GO:0001195 ... P11632 12381320 PDBbind: Kd=7.5nM
    21726 1j5o:A (3.5) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 10468556
    21727 1j5o:A (3.5) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 10468556
    21728 1j5p:A (1.9) BS01 NAD 1.4.1.21 GO:0009435 ... Q9X1X6 N/A
    21729 1j5u:A (2.0) BS01 CA ? GO:0008033 ... Q9X0H1 N/A
    21730 1j6t:B (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 12202490
    21731 1j6v:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... Q9RRU8 11435117
    21732 1j6w:A (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    21733 1j6w:A (2.1) BS02 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    21734 1j6w:A (2.1) BS03 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    21735 1j6w:B (2.1) BS01 ZN 4.4.1.21 GO:0005506 ... P44007 11435117
    21736 1j6w:B (2.1) BS02 MET 4.4.1.21 GO:0005506 ... P44007 11435117
    21737 1j6x:A (2.38) BS01 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    21738 1j6x:A (2.38) BS02 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    21739 1j6x:A (2.38) BS03 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    21740 1j6x:B (2.38) BS01 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    21741 1j6x:B (2.38) BS02 ZN 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    21742 1j6x:B (2.38) BS03 MET 4.4.1.21 GO:0005506 ... Q9ZMW8 11435117
    21743 1j6z:A (1.54) BS01 CA 3.6.4.- GO:0000287 ... P68135 11474115
    21744 1j6z:A (1.54) BS02 CA 3.6.4.- GO:0000287 ... P68135 11474115
    21745 1j6z:A (1.54) BS03 CA 3.6.4.- GO:0000287 ... P68135 11474115
    21746 1j6z:A (1.54) BS04 ADP 3.6.4.- GO:0000287 ... P68135 11474115
    21747 1j6z:A (1.54) BS05 RHO 3.6.4.- GO:0000287 ... P68135 11474115
    21748 1j70:A (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    21749 1j70:B (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    21750 1j70:C (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    21751 1j71:A (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... Q00663 9335526
    21752 1j73:B (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    21753 1j73:D (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    21754 1j75:A (1.85) BS01 dna ? GO:0003677 ... Q9QY24 11524677 PDBbind: Kd=35nM
    21755 1j77:A (1.5) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 11560504
    21756 1j78:B (2.31) BS01 VDY ? GO:0003779 ... P02774 11799400
    21757 1j79:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    21758 1j79:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    21759 1j79:A (1.7) BS03 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    21760 1j79:B (1.7) BS01 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    21761 1j79:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    21762 1j79:B (1.7) BS03 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    21763 1j79:B (1.7) BS04 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    21764 1j7a:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    21765 1j7b:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    21766 1j7c:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    21767 1j7e:A (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    21768 1j7e:B (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    21769 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    21770 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    21771 1j7k:A (1.8) BS01 ATP 3.6.4.12 GO:0000400 ... Q56313 11478862
    21772 1j7l:A (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21773 1j7l:A (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21774 1j7l:B (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21775 1j7l:B (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21776 1j7n:A (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    21777 1j7n:B (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    21778 1j7o:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    21779 1j7o:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    21780 1j7p:A (-1.00) BS01 CA ? GO:0005509 ... P0DP23 11685248
    21781 1j7p:A (-1.00) BS02 CA ? GO:0005509 ... P0DP23 11685248
    21782 1j7s:A (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    21783 1j7s:B (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    21784 1j7s:C (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    21785 1j7s:D (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    21786 1j7u:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21787 1j7u:A (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21788 1j7u:B (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21789 1j7u:B (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    21790 1j7w:A (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    21791 1j7w:B (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    21792 1j7w:C (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    21793 1j7w:D (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    21794 1j7y:A (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    21795 1j7y:B (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    21796 1j7y:C (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    21797 1j7y:D (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    21798 1j7z:B (2.25) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    21799 1j80:B (2.1) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282
    21800 1j81:B (2.2) BS01 peptide 4.6.1.18 GO:0003676 ... P61823 11373282

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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