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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    20401 1iqj:A (3.0) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    20402 1iqj:A (3.0) BS02 XMH 3.4.21.6 GO:0004252 ... P00742 N/A
    20403 1iqk:A (3.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    20404 1iqk:A (3.2) BS02 XMI 3.4.21.6 GO:0004252 ... P00742 N/A
    20405 1iql:A (2.7) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    20406 1iql:A (2.7) BS02 XMJ 3.4.21.6 GO:0004252 ... P00742 N/A
    20407 1iqm:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    20408 1iqm:A (2.6) BS02 XMK 3.4.21.6 GO:0004252 ... P00742 N/A
    20409 1iqn:A (2.6) BS01 CA 3.4.21.6 GO:0004252 ... P00742 N/A
    20410 1iqn:A (2.6) BS02 XMC 3.4.21.6 GO:0004252 ... P00742 N/A
    20411 1iqp:A (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    20412 1iqp:B (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    20413 1iqp:C (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    20414 1iqp:E (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    20415 1iqr:A (2.1) BS01 FAD 4.1.99.3 GO:0000166 ... P61497 11707580
    20416 1iqu:A (2.2) BS01 TDR 4.1.99.3 GO:0000166 ... P61497 11707580
    20417 1iqu:A (2.2) BS02 FAD 4.1.99.3 GO:0000166 ... P61497 11707580
    20418 1iqx:A (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    20419 1iqx:B (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    20420 1iqz:A (0.92) BS01 SF4 ? GO:0005506 ... P10245 11827483
    20421 1ir0:A (1.0) BS01 SF4 ? GO:0005506 ... P10245 11827483
    20422 1ir1:A (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    20423 1ir1:A (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    20424 1ir1:B (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    20425 1ir1:B (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    20426 1ir1:C (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    20427 1ir1:C (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    20428 1ir1:D (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    20429 1ir1:D (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    20430 1ir2:A (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20431 1ir2:A (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20432 1ir2:A (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20433 1ir2:B (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20434 1ir2:B (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20435 1ir2:B (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20436 1ir2:C (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20437 1ir2:C (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20438 1ir2:C (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20439 1ir2:D (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20440 1ir2:D (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20441 1ir2:D (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20442 1ir2:E (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20443 1ir2:E (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20444 1ir2:E (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20445 1ir2:F (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20446 1ir2:F (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20447 1ir2:F (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20448 1ir2:G (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20449 1ir2:G (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20450 1ir2:G (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20451 1ir2:H (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20452 1ir2:H (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20453 1ir2:H (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20454 1ir2:S (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20455 1ir2:S (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20456 1ir2:S (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20457 1ir2:T (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20458 1ir2:T (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20459 1ir2:T (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20460 1ir2:U (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20461 1ir2:U (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20462 1ir2:U (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20463 1ir2:V (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20464 1ir2:V (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20465 1ir2:V (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20466 1ir2:W (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20467 1ir2:W (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20468 1ir2:W (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20469 1ir2:X (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20470 1ir2:X (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20471 1ir2:X (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20472 1ir2:Y (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20473 1ir2:Y (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20474 1ir2:Y (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20475 1ir2:Z (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20476 1ir2:Z (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    20477 1ir2:Z (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20478 1ir3:A (1.9) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 9312016
    20479 1ir3:A (1.9) BS02 MG 2.7.10.1 GO:0004672 ... P06213 9312016
    20480 1ir3:A (1.9) BS03 ANP 2.7.10.1 GO:0004672 ... P06213 9312016
    20481 1ir6:A (2.9) BS01 MN 3.1.-.- GO:0003676 ... Q5SJ47 11972066
    20482 1irb:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 8810924
    20483 1irc:A (2.17) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8204590
    20484 1irc:A (2.17) BS02 IMD 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8204590
    20485 1ird:A (1.25) BS01 HEM ? GO:0004601 ... P69905 N/A
    20486 1ird:B (1.25) BS01 HEM ? GO:0004601 ... P68871 N/A
    20487 1ire:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 11700034
    20488 1iri:A (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    20489 1iri:B (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    20490 1iri:C (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    20491 1iri:D (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    20492 1irj:A (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    20493 1irj:A (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20494 1irj:B (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    20495 1irj:B (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20496 1irj:B (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    20497 1irj:C (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    20498 1irj:C (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20499 1irj:D (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    20500 1irj:D (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20501 1irj:D (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    20502 1irj:E (2.1) BS01 CPS ? GO:0002523 ... P06702 11851337
    20503 1irj:E (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20504 1irj:E (2.1) BS03 CA ? GO:0002523 ... P06702 11851337
    20505 1irj:F (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    20506 1irj:F (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20507 1irj:G (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    20508 1irj:G (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20509 1irj:G (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    20510 1irj:H (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    20511 1irj:H (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    20512 1irn:A (1.2) BS01 ZN ? GO:0005506 ... P00268 8799113
    20513 1iro:A (1.1) BS01 FE ? GO:0005506 ... P00268 8799113
    20514 1irs:A (-1.00) BS01 peptide ? GO:0005158 ... P35568 8599766
    20515 1iru:1 (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    20516 1iru:1 (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    20517 1iru:A (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    20518 1iru:B (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    20519 1iru:C (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    20520 1iru:D (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    20521 1iru:G (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    20522 1iru:G (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    20523 1iru:I (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    20524 1iru:J (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    20525 1iru:J (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    20526 1iru:K (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    20527 1iru:L (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    20528 1iru:M (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    20529 1iru:M (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    20530 1iru:O (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    20531 1iru:P (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    20532 1iru:Q (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    20533 1iru:R (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    20534 1iru:U (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    20535 1iru:U (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    20536 1iru:W (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    20537 1iru:X (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    20538 1iru:X (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    20539 1iru:Y (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    20540 1iru:Z (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    20541 1irv:A (1.9) BS01 HEM ? GO:0005515 ... P00044 8718869
    20542 1irw:A (2.0) BS01 HEM ? GO:0005515 ... P00044 8718869
    20543 1irx:A (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    20544 1irx:A (2.6) BS02 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    20545 1irx:B (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    20546 1is2:A (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    20547 1is2:A (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    20548 1is2:B (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    20549 1is2:B (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    20550 1is3:A (1.45) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    20551 1is3:A (1.45) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    20552 1is4:A (1.9) BS01 BGC ? GO:0005615 ... Q9YIC2 12206768
    20553 1is4:A (1.9) BS02 GAL ? GO:0005615 ... Q9YIC2 12206768
    20554 1is7:K (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20555 1is7:K (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20556 1is7:L (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20557 1is7:L (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20558 1is7:M (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20559 1is7:M (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20560 1is7:N (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20561 1is7:N (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20562 1is7:O (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20563 1is7:O (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20564 1is7:P (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20565 1is7:P (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20566 1is7:Q (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20567 1is7:Q (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20568 1is7:R (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20569 1is7:R (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20570 1is7:S (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20571 1is7:S (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20572 1is7:T (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    20573 1is7:T (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    20574 1is8:A (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20575 1is8:B (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20576 1is8:C (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20577 1is8:D (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20578 1is8:E (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20579 1is8:F (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20580 1is8:G (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20581 1is8:H (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20582 1is8:I (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20583 1is8:J (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    20584 1is8:K (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20585 1is8:K (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20586 1is8:L (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20587 1is8:L (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20588 1is8:M (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20589 1is8:M (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20590 1is8:N (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20591 1is8:N (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20592 1is8:O (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20593 1is8:O (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20594 1is8:P (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20595 1is8:P (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20596 1is8:Q (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20597 1is8:Q (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20598 1is8:R (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    20599 1is8:R (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    20600 1is8:S (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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