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BioLiP
Download all results in tab-seperated text for 761 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 5ifk:A (1.967) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 27768715
    602 5ifk:B (1.967) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 27768715
    603 5ifk:C (1.967) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 27768715
    604 5iu6:A (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020 PDBbind: -logKd/Ki=3.89, Ki=0.13mM
    605 5iu6:B (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020 PDBbind: -logKd/Ki=3.89, Ki=0.13mM
    606 5iu6:C (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020
    607 5ko5:A (1.36) BS01 CYT 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840 PDBbind: -logKd/Ki=4.57, Kd=27uM
    608 5ko6:A (1.42) BS01 CYT 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    609 5ko6:A (1.42) BS02 R1P 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    610 5lu0:A (1.73) BS01 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    611 5lu0:B (1.73) BS01 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    612 5lu0:C (1.73) BS01 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    613 5lu0:E (1.73) BS01 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    614 5mx6:A (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    615 5mx6:B (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    616 5mx6:C (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    617 5mx6:D (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    618 5mx6:F (2.41) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    619 5mx8:A (2.4) BS01 HPA 2.4.2.1 GO:0003824 ... P56463 28336275
    620 5tbs:A (1.9) BS01 ADE 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    621 5tbt:A (2.101) BS01 CTN 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    622 5tbu:A (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... A0A0U3AGT1 30192840
    623 5tbv:A (1.95) BS01 TBN 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    624 5ugf:A (2.2) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 28584087 BindingDB: Ki=7nM
    625 5ugf:B (2.2) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 28584087 BindingDB: Ki=7nM
    626 5ugf:C (2.2) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 28584087 BindingDB: Ki=7nM
    627 5ugf:D (2.2) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 28584087 BindingDB: Ki=7nM
    628 5ugf:E (2.2) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 28584087 BindingDB: Ki=7nM
    629 5ugf:F (2.2) BS01 IM5 2.4.2.1 GO:0000255 ... P00491 28584087 BindingDB: Ki=7nM
    630 5znc:A (1.66) BS01 QI9 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8T9Z7 30602534 MOAD: Kd=65nM
    PDBbind: -logKd/Ki=7.52, Kd=29.9nM
    631 5zni:A (2.3) BS01 YMZ 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8T9Z7 30602534 MOAD: Kd=11uM
    PDBbind: -logKd/Ki=4.39, Kd=40.3uM
    632 6aqs:A (1.57) BS01 IM5 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 29440412 MOAD: Ki=28nM
    PDBbind: -logKd/Ki=7.55, Ki=28nM
    633 6awe:A (1.65) BS01 C0J 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    634 6axa:A (1.59) BS01 D4Y 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    635 6b2l:A (1.56) BS01 2IM 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    636 6b37:A (1.5) BS01 CGD 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    637 6b3l:A (1.52) BS01 XM0 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    638 6b4q:A (1.6) BS01 CQG 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    639 6b4t:A (1.51) BS01 CQJ 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    640 6b56:A (1.42) BS01 CQV 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    641 6b6k:A (1.46) BS01 CVG 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    642 6b71:A (1.52) BS01 A5H 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    643 6b7i:A (1.54) BS01 CXJ 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    644 6bb7:A (1.44) BS01 D4V 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    645 6bfv:A (1.921) BS01 DJP 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    646 6bhb:A (2.0) BS01 DS1 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    647 6bi1:A (1.42) BS01 SEM 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    648 6bi9:A (1.59) BS01 DS7 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    649 6bif:A (1.6) BS01 DSJ 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    650 6bj6:A (1.73) BS01 DTS 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    651 6bj7:A (1.56) BS01 DU7 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    652 6dzd:A (2.66) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... A5A677 N/A
    653 6dzd:B (2.66) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... A5A677 N/A
    654 6f4w:A (2.293) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    PDBbind: -logKd/Ki=5.53, Kd=2.95uM
    655 6f4w:A (2.293) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    PDBbind: -logKd/Ki=5.53, Kd=2.95uM
    656 6f4w:B (2.293) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    657 6f4w:B (2.293) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    658 6f4w:C (2.293) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    659 6f4w:C (2.293) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    660 6f4w:D (2.293) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    PDBbind: -logKd/Ki=5.53, Kd=2.95uM
    661 6f4w:D (2.293) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    PDBbind: -logKd/Ki=5.53, Kd=2.95uM
    662 6f4w:E (2.293) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    663 6f4w:E (2.293) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    664 6f4w:F (2.293) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=2.95uM
    665 6f4x:A (1.694) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    PDBbind: -logKd/Ki=4.97, Kd=10.7uM
    666 6f4x:A (1.694) BS02 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    667 6f4x:B (1.694) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    668 6f4x:B (1.694) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    669 6f4x:C (1.694) BS01 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    670 6f4x:C (1.694) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    671 6f4x:C (1.694) BS03 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    672 6f4x:D (1.694) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    PDBbind: -logKd/Ki=4.97, Kd=10.7uM
    673 6f4x:D (1.694) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    PDBbind: -logKd/Ki=4.97, Kd=10.7uM
    674 6f4x:E (1.694) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816
    675 6f4x:E (1.694) BS02 PO4 2.4.2.1 GO:0003824 ... P56463 29430816
    676 6f4x:E (1.694) BS03 FMC 2.4.2.1 GO:0003824 ... P56463 29430816
    677 6f4x:F (1.694) BS01 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    678 6f4x:F (1.694) BS02 FMC 2.4.2.1 GO:0003824 ... P56463 29430816 MOAD: Kd=10.7uM
    679 6t0y:A (1.2) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... P84138 31978345
    680 6t0y:A (1.2) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... P84138 31978345
    681 6t1b:A (1.2) BS01 NOS 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... P84138 31978345
    682 6t1b:A (1.2) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... P84138 31978345
    683 6t1b:A (1.2) BS03 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... P84138 31978345
    684 6xz2:B (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    685 6xz2:C (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    686 7f3v:A (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    687 7f3v:B (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    688 7f3v:C (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    689 7f3v:D (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    690 7fbg:A (1.6) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... Q812W6 N/A
    691 7fbg:A (1.6) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... Q812W6 N/A
    692 7fbg:A (1.6) BS03 CA 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... Q812W6 N/A
    693 7ooy:B (1.9) BS01 05Z 2.4.2.1 GO:0003824 ... P56463 35437103
    694 7ooz:B (1.7) BS01 05Q 2.4.2.1 GO:0003824 ... P56463 35437103
    695 7op9:A (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    696 7op9:B (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    697 7op9:C (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    698 7op9:D (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    699 7op9:E (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    700 7op9:F (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    701 7op9:G (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    702 7op9:H (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    703 7op9:I (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    704 7op9:J (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    705 7op9:K (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    706 7op9:L (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    707 7opa:C (2.0) BS01 05Z 2.4.2.1 GO:0003824 ... P56463 35437103
    708 7opa:H (2.0) BS01 05Z 2.4.2.1 GO:0003824 ... P56463 35437103
    709 7w1g:A (1.86) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    710 7w1g:B (1.86) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    711 7w1g:C (1.86) BS01 87E 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    712 7w1g:D (1.86) BS01 87E 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    713 7zsl:A (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    714 7zsl:B (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    715 7zsl:C (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    716 7zsl:D (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    717 7zsl:E (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    718 7zsl:F (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    719 7zsm:A (2.65) BS01 JU9 2.4.2.1 GO:0000255 ... P00491 37134237
    720 7zsn:A (2.36) BS01 JSI 2.4.2.1 GO:0000255 ... P00491 37134237
    721 7zsn:A (2.36) BS02 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    722 7zsn:A (2.36) BS03 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    723 7zso:A (1.95) BS01 JTC 2.4.2.1 GO:0000255 ... P00491 37134237
    724 7zso:B (1.95) BS01 JTC 2.4.2.1 GO:0000255 ... P00491 37134237
    725 7zso:C (1.95) BS01 JTC 2.4.2.1 GO:0000255 ... P00491 37134237
    726 7zsp:A (2.29) BS01 JT3 2.4.2.1 GO:0000255 ... P00491 37134237
    727 7zsp:A (2.29) BS02 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    728 7zsp:A (2.29) BS03 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    729 7zsp:A (2.29) BS04 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    730 7zsq:A (1.77) BS01 JTO 2.4.2.1 GO:0003824 ... P9WP01 37134237
    731 7zsq:A (1.77) BS02 TEW 2.4.2.1 GO:0003824 ... P9WP01 37134237
    732 7zsq:B (1.77) BS01 TEW 2.4.2.1 GO:0003824 ... P9WP01 37134237
    733 7zsq:B (1.77) BS02 JTO 2.4.2.1 GO:0003824 ... P9WP01 37134237
    734 7zsq:B (1.77) BS03 P4K 2.4.2.1 GO:0003824 ... P9WP01 37134237
    735 7zsq:C (1.77) BS01 JTO 2.4.2.1 GO:0003824 ... P9WP01 37134237
    736 7zsr:A (1.97) BS01 JSI 2.4.2.1 GO:0003824 ... P9WP01 37134237
    737 7zsr:B (1.97) BS01 JSI 2.4.2.1 GO:0003824 ... P9WP01 37134237
    738 7zsr:C (1.97) BS01 JSI 2.4.2.1 GO:0003824 ... P9WP01 37134237
    739 8c25:A (1.56) BS01 JU9 2.4.2.1 GO:0003824 ... P9WP01 37134237
    740 8c25:B (1.56) BS01 JU9 2.4.2.1 GO:0003824 ... P9WP01 37134237
    741 8swp:A (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    742 8swp:B (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    743 8swp:D (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    744 8swp:E (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    745 8swq:A (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    746 8swq:B (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    747 8swq:D (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    748 8swq:E (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    749 8swr:A (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    750 8swr:B (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    751 8swr:D (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    752 8sws:A (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    753 8sws:B (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    754 8sws:D (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    755 8sws:E (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    756 8swt:A (1.66) BS01 IMH 2.4.2.1 GO:0003824 ... Q5LAA3 37812583
    757 8swt:B (1.66) BS01 IMH 2.4.2.1 GO:0003824 ... Q5LAA3 37812583
    758 8swu:A (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    759 8swu:B (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    760 8swu:C (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    761 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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