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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15001 1gjp:A (1.8) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 11513881
    15002 1gjq:A (2.7) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    15003 1gjq:A (2.7) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    15004 1gjq:B (2.7) BS01 HEC 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    15005 1gjq:B (2.7) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    15006 1gjr:A (2.1) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 12079352
    15007 1gjr:A (2.1) BS02 NAP 1.18.1.2 GO:0016491 ... P21890 12079352
    15008 1gjv:A (2.7) BS01 K 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    15009 1gjv:A (2.7) BS02 AGS 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    15010 1gjw:A (2.1) BS01 GLC ? GO:0004556 ... O33838 11545590
    15011 1gjw:A (2.1) BS02 GLC ? GO:0004556 ... O33838 11545590
    15012 1gjw:A (2.1) BS03 GLC ? GO:0004556 ... O33838 11545590
    15013 1gk0:B (2.5) BS01 PO4 3.5.1.93 GO:0016787 ... P07662 11742126
    15014 1gk0:B (2.5) BS02 EDO 3.5.1.93 GO:0016787 ... P07662 11742126
    15015 1gk0:D (2.5) BS01 PO4 3.5.1.93 GO:0016787 ... P07662 11742126
    15016 1gk0:D (2.5) BS02 EDO 3.5.1.93 GO:0016787 ... P07662 11742126
    15017 1gk1:B (2.4) BS01 GOL 3.5.1.93 GO:0016787 ... P07662 11742126
    15018 1gk1:D (2.4) BS01 GOL 3.5.1.93 GO:0016787 ... P07662 11742126
    15019 1gk8:A (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    15020 1gk8:A (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    15021 1gk8:C (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    15022 1gk8:C (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    15023 1gk8:E (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    15024 1gk8:E (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    15025 1gk8:G (1.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11641402
    15026 1gk8:G (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    15027 1gk9:B (1.3) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    15028 1gka:A (3.23) BS01 AXT ? GO:0000302 ... P58989 12119396
    15029 1gka:A (3.23) BS02 AXT ? GO:0000302 ... P58989 12119396
    15030 1gka:B (3.23) BS01 AXT ? GO:0000302 ... P80007 12119396
    15031 1gka:B (3.23) BS02 AXT ? GO:0000302 ... P80007 12119396
    15032 1gkb:A (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    15033 1gkb:A (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    15034 1gkb:A (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    15035 1gkb:B (1.56) BS01 MN ? GO:0030246 ... P02866 11976483
    15036 1gkb:B (1.56) BS02 CA ? GO:0030246 ... P02866 11976483
    15037 1gkb:B (1.56) BS03 MG ? GO:0030246 ... P02866 11976483
    15038 1gkc:A (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15039 1gkc:A (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15040 1gkc:A (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15041 1gkc:A (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15042 1gkc:A (2.3) BS05 NFH 3.4.24.35 GO:0004222 ... P14780 12051944
    15043 1gkc:A (2.3) BS06 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15044 1gkc:A (2.3) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15045 1gkc:B (2.3) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15046 1gkc:B (2.3) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15047 1gkc:B (2.3) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15048 1gkc:B (2.3) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15049 1gkc:B (2.3) BS05 NFH 3.4.24.35 GO:0004222 ... P14780 12051944
    15050 1gkc:B (2.3) BS06 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15051 1gkc:B (2.3) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15052 1gkd:A (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15053 1gkd:A (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15054 1gkd:A (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15055 1gkd:A (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15056 1gkd:A (2.1) BS05 STN 3.4.24.35 GO:0004222 ... P14780 12051944
    15057 1gkd:A (2.1) BS06 BUM 3.4.24.35 GO:0004222 ... P14780 12051944
    15058 1gkd:A (2.1) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15059 1gkd:A (2.1) BS08 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15060 1gkd:B (2.1) BS01 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15061 1gkd:B (2.1) BS02 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15062 1gkd:B (2.1) BS03 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15063 1gkd:B (2.1) BS04 CA 3.4.24.35 GO:0004222 ... P14780 12051944
    15064 1gkd:B (2.1) BS05 STN 3.4.24.35 GO:0004222 ... P14780 12051944
    15065 1gkd:B (2.1) BS06 BUM 3.4.24.35 GO:0004222 ... P14780 12051944
    15066 1gkd:B (2.1) BS07 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15067 1gkd:B (2.1) BS08 ZN 3.4.24.35 GO:0004222 ... P14780 12051944
    15068 1gkf:B (1.41) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15069 1gkf:B (1.41) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15070 1gkf:B (1.41) BS03 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15071 1gkf:B (1.41) BS04 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15072 1gkf:B (1.41) BS05 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15073 1gkf:B (1.41) BS06 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15074 1gkf:B (1.41) BS07 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15075 1gkf:B (1.41) BS08 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15076 1gkf:B (1.41) BS09 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15077 1gkf:B (1.41) BS10 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15078 1gkf:B (1.41) BS11 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15079 1gkf:B (1.41) BS12 CA 3.5.1.11 GO:0016787 ... P06875 11601852
    15080 1gki:A (3.0) BS01 ADP ? N/A Q04230 11214325
    15081 1gki:B (3.0) BS01 ADP ? N/A Q04230 11214325
    15082 1gki:B (3.0) BS02 ADP ? N/A Q04230 11214325
    15083 1gki:D (3.0) BS01 ADP ? N/A Q04230 11214325
    15084 1gki:D (3.0) BS02 ADP ? N/A Q04230 11214325
    15085 1gki:E (3.0) BS01 ADP ? N/A Q04230 11214325
    15086 1gki:E (3.0) BS02 ADP ? N/A Q04230 11214325
    15087 1gki:F (3.0) BS01 ADP ? N/A Q04230 11214325
    15088 1gki:F (3.0) BS02 ADP ? N/A Q04230 11214325
    15089 1gki:G (3.0) BS01 ADP ? N/A Q04230 11214325
    15090 1gkl:A (1.4) BS01 FER 3.2.1.8 N/A P51584 11738044
    15091 1gkl:B (1.4) BS01 FER 3.2.1.8 N/A P51584 11738044
    15092 1gkm:A (1.0) BS01 CYS 4.3.1.3 N/A N/A 11895450
    15093 1gkp:A (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15094 1gkp:A (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15095 1gkp:B (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15096 1gkp:B (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15097 1gkp:C (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15098 1gkp:C (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15099 1gkp:D (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15100 1gkp:D (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15101 1gkp:E (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15102 1gkp:E (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15103 1gkp:F (1.295) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15104 1gkp:F (1.295) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15105 1gkq:A (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15106 1gkq:A (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15107 1gkq:B (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15108 1gkq:B (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15109 1gkq:C (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15110 1gkq:C (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15111 1gkq:D (2.6) BS01 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15112 1gkq:D (2.6) BS02 ZN 3.5.2.2 GO:0005737 ... Q7SIE9 12079340
    15113 1gkr:A (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15114 1gkr:A (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15115 1gkr:B (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15116 1gkr:B (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15117 1gkr:C (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15118 1gkr:C (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15119 1gkr:D (2.6) BS01 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15120 1gkr:D (2.6) BS02 ZN 3.5.2.- GO:0000256 ... P81006 12093275
    15121 1gks:A (-1.00) BS01 HEM ? GO:0005506 ... P00122 8969306
    15122 1gkt:A (2.1) BS01 peptide 3.4.23.22 N/A P11838 11683623
    15123 1gky:A (2.0) BS01 SO4 2.7.4.8 GO:0004385 ... P15454 1314905
    15124 1gky:A (2.0) BS02 5GP 2.7.4.8 GO:0004385 ... P15454 1314905
    15125 1gkz:A (2.2) BS01 K 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    15126 1gkz:A (2.2) BS02 ADP 2.7.11.1
    2.7.11.4    		 GO:0004672 ... Q00972 11562470
    15127 1gl3:A (2.6) BS01 CYS 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    15128 1gl3:A (2.6) BS02 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    15129 1gl3:B (2.6) BS01 NDP 1.2.1.11 GO:0004073 ... P0A9Q9 11724560
    15130 1gl4:A (2.0) BS01 ZN ? N/A P10493 11574465
    15131 1gl6:A (2.8) BS01 GNP ? N/A Q04230 11214325
    15132 1gl6:A (2.8) BS02 GNP ? N/A Q04230 11214325
    15133 1gl6:B (2.8) BS01 GNP ? N/A Q04230 11214325
    15134 1gl6:D (2.8) BS01 GNP ? N/A Q04230 11214325
    15135 1gl6:E (2.8) BS01 GNP ? N/A Q04230 11214325
    15136 1gl6:F (2.8) BS01 GNP ? N/A Q04230 11214325
    15137 1gl6:G (2.8) BS01 GNP ? N/A Q04230 11214325
    15138 1gl7:A (3.0) BS01 ANP ? N/A Q04230 11214325
    15139 1gl7:B (3.0) BS01 ANP ? N/A Q04230 11214325
    15140 1gl7:D (3.0) BS01 ANP ? N/A Q04230 11214325
    15141 1gl7:E (3.0) BS01 ANP ? N/A Q04230 11214325
    15142 1gl7:E (3.0) BS02 ANP ? N/A Q04230 11214325
    15143 1gl7:F (3.0) BS01 ANP ? N/A Q04230 11214325
    15144 1gl7:G (3.0) BS01 ANP ? N/A Q04230 11214325
    15145 1gl9:B (3.2) BS01 ANP 5.6.2.- GO:0003676 ... O29238 11823434
    15146 1gl9:C (3.2) BS01 ANP 5.6.2.- GO:0003676 ... O29238 11823434
    15147 1gla:G (2.6) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    15148 1glb:G (2.6) BS01 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    15149 1glb:G (2.6) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 8430315
    15150 1glc:F (2.65) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    15151 1glc:G (2.65) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15152 1glc:G (2.65) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15153 1gld:G (2.93) BS01 MN 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15154 1gld:G (2.93) BS02 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15155 1gld:G (2.93) BS03 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15156 1gle:F (2.94) BS01 ZN 2.7.1.69 GO:0005515 ... P69783 8170944
    15157 1gle:G (2.94) BS01 G3H 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15158 1gle:G (2.94) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 8170944
    15159 1glf:O (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15160 1glf:O (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15161 1glf:O (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15162 1glf:X (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15163 1glf:X (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15164 1glf:X (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15165 1glf:Y (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15166 1glf:Y (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15167 1glf:Y (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15168 1glf:Z (2.62) BS01 PO4 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15169 1glf:Z (2.62) BS02 ADP 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15170 1glf:Z (2.62) BS03 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9817843
    15171 1glg:A (2.0) BS01 GAL ? GO:0005509 ... P0AEE5 8161535
    15172 1glg:A (2.0) BS02 CA ? GO:0005509 ... P0AEE5 8161535
    15173 1glh:A (2.0) BS01 NA 3.2.1.73 GO:0004553 ... P23904 8200344
    15174 1gli:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    15175 1gli:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    15176 1gli:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8647854
    15177 1gli:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8647854
    15178 1glj:O (3.0) BS01 ATS 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15179 1glj:O (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15180 1glj:Y (3.0) BS01 ATS 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15181 1glj:Y (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15182 1gll:O (3.0) BS01 ACP 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15183 1gll:O (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15184 1gll:Y (3.0) BS01 ACP 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15185 1gll:Y (3.0) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 10090737
    15186 1glm:A (2.4) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15187 1glm:A (2.4) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15188 1glm:A (2.4) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15189 1glm:A (2.4) BS04 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15190 1glm:A (2.4) BS05 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15191 1glm:A (2.4) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15192 1glm:A (2.4) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15193 1glm:A (2.4) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15194 1glm:A (2.4) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8176747
    15195 1glp:A (1.9) BS01 GTS 2.5.1.18 GO:0000302 ... P19157 8145243
    15196 1glp:B (1.9) BS01 GTS 2.5.1.18 GO:0000302 ... P19157 8145243
    15197 1glq:A (1.8) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 8145243
    15198 1glq:B (1.8) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 8145243
    15199 1glu:A (2.9) BS01 dna ? GO:0003700 ... P06536 1865905
    15200 1glu:A (2.9) BS02 dna ? GO:0003700 ... P06536 1865905
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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