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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14401 1g8w:B (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    14402 1g8w:B (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    14403 1g8w:C (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    14404 1g8w:C (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    14405 1g8w:D (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    14406 1g8w:D (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    14407 1g8x:A (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799
    11226153
    14408 1g8x:A (2.8) BS02 ADP ? GO:0003774 ... P05095
    P08799
    11226153
    14409 1g8x:B (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799
    11226153
    14410 1g8x:B (2.8) BS02 ADP ? GO:0003774 ... P05095
    P08799
    11226153
    14411 1g8z:D (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    14412 1g8z:F (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    14413 1g8z:G (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    14414 1g8z:H (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    14415 1g93:A (2.5) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 11179209
    14416 1g93:A (2.5) BS02 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    14417 1g93:A (2.5) BS03 UPG 2.4.1.87 GO:0005975 ... P14769 11179209
    14418 1g94:A (1.74) BS01 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    14419 1g94:A (1.74) BS02 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    14420 1g94:A (1.74) BS03 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    14421 1g94:A (1.74) BS04 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    14422 1g94:A (1.74) BS05 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    14423 1g97:A (1.96) BS01 MG 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11124906
    14424 1g97:A (1.96) BS02 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11124906
    14425 1g98:A (1.9) BS01 PA5 5.3.1.9 GO:0004347 ... Q9N1E2 11327814 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    14426 1g98:B (1.9) BS01 PA5 5.3.1.9 GO:0004347 ... Q9N1E2 11327814 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    14427 1g99:A (2.5) BS01 ADP 2.7.2.1 GO:0000287 ... P38502 11133963
    14428 1g99:B (2.5) BS01 ADP 2.7.2.1 GO:0000287 ... P38502 11133963
    14429 1g9a:A (2.1) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    14430 1g9a:A (2.1) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    14431 1g9a:A (2.1) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    14432 1g9b:A (2.0) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    14433 1g9b:A (2.0) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    14434 1g9b:A (2.0) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    14435 1g9c:A (2.35) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    14436 1g9c:A (2.35) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    14437 1g9c:A (2.35) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    14438 1g9d:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    14439 1g9d:A (2.2) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    14440 1g9d:A (2.2) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    14441 1g9f:A (2.5) BS01 GAL ? GO:0030246 ... P05046 11491289
    14442 1g9f:A (2.5) BS02 MN ? GO:0030246 ... P05046 11491289
    14443 1g9f:A (2.5) BS03 CA ? GO:0030246 ... P05046 11491289
    14444 1g9g:A (1.9) BS01 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    14445 1g9g:A (1.9) BS02 MG 3.2.1.4 GO:0004553 ... P37698 18035374
    14446 1g9h:A (1.8) BS01 BGC 3.2.1.1 GO:0003824 ... P29957 11914073
    14447 1g9h:A (1.8) BS02 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    14448 1g9h:A (1.8) BS03 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    14449 1g9i:E (2.2) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 11257512
    14450 1g9i:E (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 11257512
    14451 1g9j:A (1.9) BS01 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    14452 1g9j:A (1.9) BS02 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    14453 1g9j:A (1.9) BS03 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    14454 1g9j:A (1.9) BS04 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    14455 1g9j:A (1.9) BS05 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    14456 1g9j:A (1.9) BS06 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    14457 1g9j:A (1.9) BS07 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    14458 1g9j:A (1.9) BS08 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    14459 1g9j:A (1.9) BS09 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    14460 1g9k:A (1.96) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    14461 1g9k:A (1.96) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    14462 1g9k:A (1.96) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    14463 1g9k:A (1.96) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    14464 1g9k:A (1.96) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    14465 1g9k:A (1.96) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    14466 1g9k:A (1.96) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    14467 1g9k:A (1.96) BS08 ZN 3.4.24.40 GO:0004222 ... O69771 12577270
    14468 1g9q:A (2.3) BS01 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    14469 1g9q:A (2.3) BS02 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    14470 1g9q:B (2.3) BS01 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    14471 1g9q:B (2.3) BS02 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    14472 1g9r:A (2.0) BS01 MN 2.4.1.- GO:0016740 ... Q93EK7 11175908
    14473 1g9r:A (2.0) BS02 UPF 2.4.1.- GO:0016740 ... Q93EK7 11175908 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    14474 1g9s:A (2.8) BS01 IMP 2.4.2.8 GO:0000166 ... P0A9M2 12070315 PDBbind: -logKd/Ki=3.61, Ki=247uM
    14475 1g9s:B (2.8) BS01 N 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    14476 1g9t:A (2.8) BS01 5GP 2.4.2.8 GO:0000166 ... P0A9M2 12070315 PDBbind: -logKd/Ki=3.28, Ki=526uM
    14477 1g9t:B (2.8) BS01 N 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    14478 1g9u:A (2.35) BS01 CA ? GO:0005576 ... P17778 11575934
    14479 1g9v:A (1.85) BS01 HEM ? GO:0004601 ... P69905 11316875
    14480 1g9v:A (1.85) BS02 RQ3 ? GO:0004601 ... P69905 11316875
    14481 1g9v:A (1.85) BS03 RQ3 ? GO:0004601 ... P69905 11316875
    14482 1g9v:B (1.85) BS01 RQ3 ? GO:0004601 ... P68871 11316875
    14483 1g9v:B (1.85) BS02 HEM ? GO:0004601 ... P68871 11316875
    14484 1g9v:C (1.85) BS01 RQ3 ? GO:0004601 ... P69905 11316875
    14485 1g9v:C (1.85) BS02 HEM ? GO:0004601 ... P69905 11316875
    14486 1g9v:C (1.85) BS03 RQ3 ? GO:0004601 ... P69905 11316875
    14487 1g9v:D (1.85) BS01 RQ3 ? GO:0004601 ... P68871 11316875
    14488 1g9v:D (1.85) BS02 HEM ? GO:0004601 ... P68871 11316875
    14489 1g9x:A (2.6) BS01 ADP ? GO:0005524 ... Q58663 12554933
    14490 1g9x:B (2.6) BS01 MG ? GO:0005524 ... Q58663 12554933
    14491 1g9x:B (2.6) BS02 ADP ? GO:0005524 ... Q58663 12554933
    14492 1g9x:C (2.6) BS01 ADP ? GO:0005524 ... Q58663 12554933
    14493 1g9y:A (2.05) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14494 1g9y:A (2.05) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14495 1g9y:B (2.05) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14496 1g9y:B (2.05) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14497 1g9y:B (2.05) BS03 CA 3.1.-.- GO:0004519 ... P05725 11276249
    14498 1g9z:A (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14499 1g9z:A (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14500 1g9z:A (1.8) BS03 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14501 1g9z:B (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14502 1g9z:B (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14503 1g9z:B (1.8) BS03 dna 3.1.-.- GO:0004519 ... P05725 11276249
    14504 1ga0:A (1.6) BS01 DVR 3.5.2.6 GO:0008800 ... Q59401 11371184
    14505 1ga1:A (1.4) BS01 peptide 3.4.21.100 GO:0004252 ... P42790 11173470
    14506 1ga1:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11173470
    14507 1ga2:A (1.7) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    14508 1ga2:A (1.7) BS02 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    14509 1ga2:A (1.7) BS03 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    14510 1ga2:A (1.7) BS04 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    14511 1ga2:A (1.7) BS05 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    14512 1ga2:A (1.7) BS06 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    14513 1ga2:B (1.7) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    14514 1ga2:B (1.7) BS02 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    14515 1ga2:B (1.7) BS03 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    14516 1ga2:B (1.7) BS04 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    14517 1ga4:A (1.4) BS01 peptide 3.4.21.100 GO:0004252 ... P42790 11323721
    14518 1ga4:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    14519 1ga5:A (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    14520 1ga5:A (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    14521 1ga5:A (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    14522 1ga5:A (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    14523 1ga5:B (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    14524 1ga5:B (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    14525 1ga5:B (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    14526 1ga5:B (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    14527 1ga5:E (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    14528 1ga5:E (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    14529 1ga5:E (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    14530 1ga5:E (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    14531 1ga5:F (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    14532 1ga5:F (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    14533 1ga5:F (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    14534 1ga5:F (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    14535 1ga6:A (1.0) BS01 peptide 3.4.21.100 GO:0004252 ... P42790 11323721
    14536 1ga6:A (1.0) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    14537 1ga8:A (2.0) BS01 Z9D 2.4.1.44 GO:0016740 ... Q93EK7 11175908
    14538 1ga8:A (2.0) BS02 MN 2.4.1.44 GO:0016740 ... Q93EK7 11175908
    14539 1ga8:A (2.0) BS03 UPF 2.4.1.44 GO:0016740 ... Q93EK7 11175908 MOAD: Ki=2uM
    14540 1ga9:A (2.1) BS01 ETP 3.5.2.6 GO:0008800 ... P00811 11410378 PDBbind: -logKd/Ki=7.08, Ki=83nM
    BindingDB: Ki=80nM
    14541 1ga9:B (2.1) BS01 ETP 3.5.2.6 GO:0008800 ... P00811 11410378 BindingDB: Ki=80nM
    14542 1gad:O (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    14543 1gad:P (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    14544 1gae:O (2.17) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    14545 1gae:P (2.17) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    14546 1gaf:H (1.95) BS01 NPE ? N/A P01857 8599084 MOAD: Kd=10nM
    PDBbind: -logKd/Ki=8.00, Kd=10nM
    14547 1gaf:L (1.95) BS01 NPE ? GO:0002250 ... P01834 8599084 PDBbind: -logKd/Ki=8.00, Kd=10nM
    14548 1gag:A (2.7) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 11135668
    14549 1gag:A (2.7) BS02 MG 2.7.10.1 GO:0004672 ... P06213 11135668
    14550 1gag:A (2.7) BS03 112 2.7.10.1 GO:0004672 ... P06213 11135668
    14551 1gah:A (2.0) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14552 1gah:A (2.0) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14553 1gah:A (2.0) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14554 1gah:A (2.0) BS04 GLC 3.2.1.3 GO:0004339 ... P69327 8679589
    14555 1gah:A (2.0) BS05 AC1 3.2.1.3 GO:0004339 ... P69327 8679589
    14556 1gah:A (2.0) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14557 1gah:A (2.0) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14558 1gah:A (2.0) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14559 1gah:A (2.0) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14560 1gah:A (2.0) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14561 1gah:A (2.0) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14562 1gai:A (1.7) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14563 1gai:A (1.7) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14564 1gai:A (1.7) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14565 1gai:A (1.7) BS04 GLC 3.2.1.3 GO:0004339 ... P69327 8679589
    14566 1gai:A (1.7) BS05 RY7 3.2.1.3 GO:0004339 ... P69327 8679589
    14567 1gai:A (1.7) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14568 1gai:A (1.7) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14569 1gai:A (1.7) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14570 1gai:A (1.7) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14571 1gai:A (1.7) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14572 1gai:A (1.7) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    14573 1gal:A (2.3) BS01 FAD 1.1.3.4 GO:0005576 ... P13006 8421298
    14574 1gan:A (2.23) BS01 GAL ? GO:0005576 ... P56217 10861929
    14575 1gan:B (2.23) BS01 GAL ? GO:0005576 ... P56217 10861929
    14576 1gao:A (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    14577 1gao:A (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    14578 1gao:B (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    14579 1gao:B (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    14580 1gao:C (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    14581 1gao:C (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    14582 1gao:D (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    14583 1gao:D (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    14584 1gaq:A (2.59) BS01 FAD 1.18.1.2 GO:0016491 ... Q9SLP6 11175898
    14585 1gaq:B (2.59) BS01 FES ? GO:0009055 ... P27787 11175898
    14586 1gaq:C (2.59) BS01 FAD 1.18.1.2 GO:0016491 ... Q9SLP6 11175898
    14587 1gar:A (1.96) BS01 U89 2.1.2.2 GO:0003824 ... P08179 7776369 MOAD: Ki=100pM
    PDBbind: -logKd/Ki=10.00, Ki=100pM
    14588 1gar:B (1.96) BS01 U89 2.1.2.2 GO:0003824 ... P08179 7776369 MOAD: Ki=100pM
    14589 1gat:A (-1.00) BS01 dna ? GO:0003700 ... P17678 8332909
    14590 1gat:A (-1.00) BS02 dna ? GO:0003700 ... P17678 8332909
    14591 1gat:A (-1.00) BS03 ZN ? GO:0003700 ... P17678 8332909
    14592 1gau:A (-1.00) BS01 dna ? GO:0003700 ... P17678 8332909
    14593 1gau:A (-1.00) BS02 dna ? GO:0003700 ... P17678 8332909
    14594 1gaw:A (2.2) BS01 FAD 1.18.1.2 GO:0016491 ... Q9SLP6 11175898
    14595 1gaw:B (2.2) BS01 FAD 1.18.1.2 GO:0016491 ... Q9SLP6 11175898
    14596 1gax:A (2.9) BS01 rna 6.1.1.9 GO:0000166 ... P96142 11114335
    14597 1gax:A (2.9) BS02 ZN 6.1.1.9 GO:0000166 ... P96142 11114335
    14598 1gax:A (2.9) BS03 ZN 6.1.1.9 GO:0000166 ... P96142 11114335
    14599 1gax:A (2.9) BS04 VAA 6.1.1.9 GO:0000166 ... P96142 11114335
    14600 1gax:B (2.9) BS01 rna 6.1.1.9 GO:0000166 ... P96142 11114335

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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