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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831201 8z76:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831202 8z76:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831203 8z76:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831204 8z76:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831205 8z76:C (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831206 8z76:C (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831207 8z76:C (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831208 8z77:A (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831209 8z77:A (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831210 8z77:A (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831211 8z77:B (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831212 8z77:B (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831213 8z77:B (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831214 8z77:C (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831215 8z77:C (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831216 8z77:C (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    831217 8z85:A (2.3) BS01 rna ? GO:0042025 ... P27194 38816392
    831218 8z85:A (2.3) BS02 rna ? GO:0042025 ... P27194 38816392
    831219 8z85:B (2.3) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831220 8z85:B (2.3) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831221 8z8j:A (3.16) BS01 rna ? GO:0042025 ... P27194 38816392
    831222 8z8j:A (3.16) BS02 rna ? GO:0042025 ... P27194 38816392
    831223 8z8j:B (3.16) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831224 8z8j:B (3.16) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831225 8z8n:A (2.79) BS01 rna ? GO:0042025 ... P27194 38816392
    831226 8z8n:A (2.79) BS02 rna ? GO:0042025 ... P27194 38816392
    831227 8z8n:B (2.79) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831228 8z8n:B (2.79) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831229 8z8x:A (3.06) BS01 rna ? GO:0042025 ... P27194 38816392
    831230 8z8x:A (3.06) BS02 rna ? GO:0042025 ... P27194 38816392
    831231 8z8x:B (3.06) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831232 8z8x:B (3.06) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831233 8z8x:B (3.06) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    831234 8z8x:C (3.06) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    831235 8z90:A (2.87) BS01 rna ? GO:0042025 ... P27194 38816392
    831236 8z90:A (2.87) BS02 rna ? GO:0042025 ... P27194 38816392
    831237 8z90:B (2.87) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831238 8z90:B (2.87) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831239 8z90:B (2.87) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    831240 8z90:C (2.87) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    831241 8z97:A (2.65) BS01 rna ? GO:0042025 ... P27194 38816392
    831242 8z97:A (2.65) BS02 rna ? GO:0042025 ... P27194 38816392
    831243 8z97:A (2.65) BS03 rna ? GO:0042025 ... P27194 38816392
    831244 8z97:B (2.65) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831245 8z97:B (2.65) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831246 8z97:B (2.65) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831247 8z97:B (2.65) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831248 8z97:B (2.65) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    831249 8z97:C (2.65) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    831250 8z97:C (2.65) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    831251 8z97:C (2.65) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    831252 8z98:A (2.52) BS01 rna ? GO:0042025 ... P27194 38816392
    831253 8z98:A (2.52) BS02 V9G ? GO:0042025 ... P27194 38816392
    831254 8z98:B (2.52) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831255 8z9h:A (2.7) BS01 rna ? GO:0042025 ... P27194 38816392
    831256 8z9h:A (2.7) BS02 rna ? GO:0042025 ... P27194 38816392
    831257 8z9h:A (2.7) BS03 rna ? GO:0042025 ... P27194 38816392
    831258 8z9h:B (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831259 8z9h:B (2.7) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831260 8z9h:B (2.7) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831261 8z9h:B (2.7) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831262 8z9h:B (2.7) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    831263 8z9h:C (2.7) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    831264 8z9h:C (2.7) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    831265 8z9h:C (2.7) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    831266 8z9h:H (2.7) BS01 rna ? GO:0042025 ... P27194 38816392
    831267 8z9h:H (2.7) BS02 V9G ? GO:0042025 ... P27194 38816392
    831268 8z9h:I (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831269 8z9q:A (2.33) BS01 rna ? GO:0042025 ... P27194 38816392
    831270 8z9q:B (2.33) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831271 8z9r:A (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    831272 8z9r:A (2.58) BS02 rna ? GO:0042025 ... P27194 38816392
    831273 8z9r:A (2.58) BS03 rna ? GO:0042025 ... P27194 38816392
    831274 8z9r:B (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831275 8z9r:B (2.58) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831276 8z9r:B (2.58) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831277 8z9r:B (2.58) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831278 8z9r:C (2.58) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    831279 8z9r:C (2.58) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    831280 8z9r:H (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    831281 8z9r:I (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    831282 8zck:A (2.0) BS01 GAL ? N/A P0DOX5 N/A
    831283 8zck:B (2.0) BS01 BMA ? N/A P0DOX5 N/A
    831284 8zcl:A (2.6) BS01 GAL ? N/A P0DOX5 N/A
    831285 8zcl:A (2.6) BS02 FUL ? N/A P0DOX5 N/A
    831286 8zcm:A (2.64) BS01 GAL ? N/A P0DOX5 N/A
    831287 8zjf:B (2.7) BS01 MG ? N/A P26010 38781659
    831288 8zjf:B (2.7) BS02 CA ? N/A P26010 38781659
    831289 8zjf:B (2.7) BS03 CA ? N/A P26010 38781659
    831290 8zjv:A (1.8) BS01 5ID 2.7.11.24 GO:0000165 ... P28482 N/A
    831291 8zkc:A (2.85) BS01 MG ? GO:0005524 ... P0AF08 38797154
    831292 8zm4:A (1.4) BS01 ZN 3.4.24.27 N/A P00800 N/A
    831293 8zm4:A (1.4) BS02 CA 3.4.24.27 N/A P00800 N/A
    831294 8zm4:A (1.4) BS03 CA 3.4.24.27 N/A P00800 N/A
    831295 8zm4:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    831296 8zm4:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    831297 8zm4:A (1.4) BS06 ILE 3.4.24.27 N/A P00800 N/A
    831298 8zm4:A (1.4) BS07 LYS 3.4.24.27 N/A P00800 N/A
    831299 8zm5:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    831300 8zm5:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    831301 8zm5:A (1.4) BS03 ZN 3.4.24.27 N/A P00800 N/A
    831302 8zm5:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    831303 8zm5:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    831304 8zm5:A (1.4) BS06 CA 3.4.24.27 N/A P00800 N/A
    831305 8zm5:A (1.4) BS07 CA 3.4.24.27 N/A P00800 N/A
    831306 8zm6:A (1.4) BS01 ILE 3.4.24.27 N/A P00800 N/A
    831307 8zm6:A (1.4) BS02 LYS 3.4.24.27 N/A P00800 N/A
    831308 8zm6:A (1.4) BS03 ZN 3.4.24.27 N/A P00800 N/A
    831309 8zm6:A (1.4) BS04 CA 3.4.24.27 N/A P00800 N/A
    831310 8zm6:A (1.4) BS05 CA 3.4.24.27 N/A P00800 N/A
    831311 8zm6:A (1.4) BS06 CA 3.4.24.27 N/A P00800 N/A
    831312 8zm6:A (1.4) BS07 CA 3.4.24.27 N/A P00800 N/A
    831313 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831314 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831315 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831316 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831317 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831318 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831319 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831320 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831321 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831322 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831323 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831324 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831325 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831326 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831327 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831328 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    831329 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831330 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831331 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831332 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831333 8znb:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    831334 8znc:A (2.41) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    831335 8znc:A (2.41) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    831336 8znd:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    831337 8zng:A (2.5) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    831338 8zng:A (2.5) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    831339 8zoz:A (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831340 8zoz:B (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831341 8zoz:C (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831342 8zoz:D (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    831343 966c:A (1.9) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 10074939
    831344 966c:A (1.9) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 10074939
    831345 966c:A (1.9) BS03 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    831346 966c:A (1.9) BS04 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    831347 966c:A (1.9) BS05 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    831348 966c:A (1.9) BS06 RS2 3.4.24.7 GO:0004222 ... P03956 10074939 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    831349 9aat:A (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    831350 9aat:B (2.2) BS01 PMP 2.6.1.1
    2.6.1.7    		 GO:0003824 ... P00508 1593633
    831351 9abp:A (1.97) BS01 GLA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.01uM
    831352 9abp:A (1.97) BS02 GAL ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    831353 9ant:A (2.4) BS01 dna ? GO:0000981 ... P02833 9699632
    831354 9ant:A (2.4) BS02 dna ? GO:0000981 ... P02833 9699632
    831355 9ant:B (2.4) BS01 dna ? GO:0000981 ... P02833 9699632
    831356 9ant:B (2.4) BS02 dna ? GO:0000981 ... P02833 9699632
    831357 9api:A (3.0) BS01 CYS ? GO:0004867 ... P01009 2785270
    831358 9arq:A (2.0) BS01 T2L 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    831359 9ars:A (2.4) BS01 T2L 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    831360 9ars:B (2.4) BS01 T2L 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    831361 9art:A (1.49) BS01 V7G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    831362 9art:D (1.49) BS01 V7G 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    831363 9asb:Q (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    831364 9asb:Q (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    831365 9asb:Q (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    831366 9asb:Q (3.4) BS04 9IG ? GO:0004930 ... P41180 38632411
    831367 9asb:Q (3.4) BS05 Y01 ? GO:0004930 ... P41180 38632411
    831368 9asb:Q (3.4) BS06 A1AF7 ? GO:0004930 ... P41180 38632411
    831369 9asb:R (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    831370 9asb:R (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    831371 9asb:R (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    831372 9asb:R (3.4) BS04 9IG ? GO:0004930 ... P41180 38632411
    831373 9asb:R (3.4) BS05 A1AF7 ? GO:0004930 ... P41180 38632411
    831374 9ass:A (1.75) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831375 9ass:A (1.75) BS02 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831376 9asx:B (1.96) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831377 9asx:B (1.96) BS02 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831378 9atc:B (2.4) BS01 ZN 2.1.3.2 GO:0005515 ... P0A7F3 9829701
    831379 9atk:A (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831380 9atk:D (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831381 9atk:G (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831382 9atk:J (2.11) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831383 9atu:A (2.05) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831384 9atu:D (2.05) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831385 9atu:F (2.05) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    831386 9auc:R (2.4) BS01 Y01 ? GO:0001503 ... P30988 38603770
    831387 9auc:R (2.4) BS02 Y01 ? GO:0001503 ... P30988 38603770
    831388 9av7:A (2.1) BS01 ANP 2.7.11.1 GO:0004672 ... A2F9N1 N/A
    831389 9ava:A (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831390 9ava:B (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831391 9ava:C (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831392 9ava:D (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831393 9ava:E (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831394 9ava:F (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831395 9ava:F (2.3) BS02 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831396 9ava:G (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831397 9ava:H (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831398 9ava:I (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831399 9ava:J (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    831400 9ava:K (2.3) BS01 A1AG1 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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