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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    827801 8wha:L (4.05) BS04 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    827802 8whb:A (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    827803 8whb:A (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    827804 8whb:B (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    827805 8whb:C (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827806 8whb:C (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827807 8whb:D (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    827808 8whb:D (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    827809 8whb:E (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    827810 8whb:E (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    827811 8whb:F (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    827812 8whb:F (3.17) BS02 dna ? GO:0000325 ... P59259 38413824
    827813 8whb:G (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    827814 8whb:G (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    827815 8whb:H (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    827816 8whb:H (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    827817 8whx:1 (2.8) BS01 rna ? GO:0003735 ... A0QV03 38245551
    827818 8whx:2 (2.8) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    827819 8whx:3 (2.8) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    827820 8whx:3 (2.8) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    827821 8whx:4 (2.8) BS01 rna ? GO:0003735 ... A0R215 38245551
    827822 8whx:5 (2.8) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    827823 8whx:6 (2.8) BS01 rna ? GO:0003735 ... A0QS39 38245551
    827824 8whx:7 (2.8) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    827825 8whx:8 (2.8) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    827826 8whx:E (2.8) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    827827 8whx:F (2.8) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    827828 8whx:G (2.8) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    827829 8whx:H (2.8) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    827830 8whx:H (2.8) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    827831 8whx:I (2.8) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    827832 8whx:J (2.8) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    827833 8whx:M (2.8) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    827834 8whx:N (2.8) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    827835 8whx:N (2.8) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    827836 8whx:O (2.8) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    827837 8whx:Q (2.8) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    827838 8whx:R (2.8) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    827839 8whx:R (2.8) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    827840 8whx:S (2.8) BS01 rna ? GO:0003735 ... A0QV42 38245551
    827841 8whx:S (2.8) BS02 rna ? GO:0003735 ... A0QV42 38245551
    827842 8whx:T (2.8) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    827843 8whx:U (2.8) BS01 rna ? GO:0003723 ... A0R151 38245551
    827844 8whx:V (2.8) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    827845 8whx:W (2.8) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    827846 8whx:X (2.8) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    827847 8whx:Z (2.8) BS01 rna ? GO:0003735 ... A0R150 38245551
    827848 8whx:c (2.8) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    827849 8whx:d (2.8) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    827850 8whx:e (2.8) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    827851 8whx:f (2.8) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    827852 8whx:g (2.8) BS01 rna ? GO:0003735 ... N/A 38245551
    827853 8whx:g (2.8) BS02 rna ? GO:0003735 ... N/A 38245551
    827854 8whx:h (2.8) BS01 rna ? GO:0000028 ... A0QS97 38245551
    827855 8whx:i (2.8) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    827856 8whx:j (2.8) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    827857 8whx:k (2.8) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    827858 8whx:l (2.8) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    827859 8whx:m (2.8) BS01 rna ? GO:0000049 ... A0QS96 38245551
    827860 8whx:n (2.8) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    827861 8whx:o (2.8) BS01 rna ? GO:0003735 ... A0R550 38245551
    827862 8whx:p (2.8) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    827863 8whx:p (2.8) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    827864 8whx:q (2.8) BS01 rna ? GO:0003735 ... A0QV37 38245551
    827865 8whx:r (2.8) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    827866 8whx:s (2.8) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    827867 8whx:t (2.8) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    827868 8whx:u (2.8) BS01 rna ? GO:0003723 ... A0R102 38245551
    827869 8whx:v (2.8) BS01 rna ? N/A A0QR10 38245551
    827870 8whx:w (2.8) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    827871 8why:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    827872 8why:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    827873 8why:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    827874 8why:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    827875 8why:4 (2.7) BS01 rna ? GO:0003735 ... A0R215 38245551
    827876 8why:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    827877 8why:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    827878 8why:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    827879 8why:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    827880 8why:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    827881 8why:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    827882 8why:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    827883 8why:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    827884 8why:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    827885 8why:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    827886 8why:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    827887 8why:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    827888 8why:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    827889 8why:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    827890 8why:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    827891 8why:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    827892 8why:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    827893 8why:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    827894 8why:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    827895 8why:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    827896 8why:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    827897 8why:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    827898 8why:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    827899 8why:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    827900 8why:Z (2.7) BS02 rna ? GO:0003735 ... A0R150 38245551
    827901 8wi7:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    827902 8wi7:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    827903 8wi7:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    827904 8wi7:3 (3.5) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    827905 8wi7:4 (3.5) BS01 rna ? GO:0003735 ... A0R215 38245551
    827906 8wi7:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    827907 8wi7:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    827908 8wi7:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    827909 8wi7:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    827910 8wi7:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    827911 8wi7:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    827912 8wi7:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    827913 8wi7:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    827914 8wi7:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    827915 8wi7:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    827916 8wi7:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    827917 8wi7:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    827918 8wi7:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    827919 8wi7:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    827920 8wi7:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    827921 8wi7:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    827922 8wi7:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    827923 8wi7:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    827924 8wi7:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    827925 8wi7:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    827926 8wi7:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    827927 8wi7:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    827928 8wi7:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    827929 8wi7:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    827930 8wi7:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    827931 8wi7:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    827932 8wi7:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    827933 8wi7:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    827934 8wi7:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    827935 8wi7:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    827936 8wi7:g (3.5) BS02 rna ? GO:0003735 ... N/A 38245551
    827937 8wi7:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    827938 8wi7:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    827939 8wi7:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    827940 8wi7:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    827941 8wi7:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    827942 8wi7:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    827943 8wi7:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    827944 8wi7:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    827945 8wi7:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    827946 8wi7:p (3.5) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    827947 8wi7:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    827948 8wi7:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    827949 8wi7:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    827950 8wi7:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    827951 8wi7:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    827952 8wi7:v (3.5) BS01 rna ? N/A A0QR10 38245551
    827953 8wi7:v (3.5) BS02 rna ? N/A A0QR10 38245551
    827954 8wi7:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    827955 8wi8:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    827956 8wi8:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    827957 8wi8:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    827958 8wi8:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    827959 8wi8:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    827960 8wi8:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    827961 8wi8:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    827962 8wi8:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    827963 8wi8:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    827964 8wi8:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    827965 8wi8:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    827966 8wi8:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    827967 8wi8:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    827968 8wi8:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    827969 8wi8:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    827970 8wi8:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    827971 8wi8:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    827972 8wi8:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    827973 8wi8:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    827974 8wi8:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    827975 8wi8:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    827976 8wi8:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    827977 8wi8:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    827978 8wi8:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    827979 8wi8:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    827980 8wi8:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    827981 8wi8:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    827982 8wi8:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    827983 8wi9:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    827984 8wi9:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    827985 8wi9:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    827986 8wi9:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    827987 8wi9:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    827988 8wi9:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    827989 8wi9:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    827990 8wi9:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    827991 8wi9:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    827992 8wi9:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    827993 8wi9:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    827994 8wi9:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    827995 8wi9:o (3.5) BS01 rna ? GO:0003735 ... A0QSG2 38245551
    827996 8wi9:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    827997 8wi9:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    827998 8wi9:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    827999 8wi9:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    828000 8wi9:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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