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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    825401 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    825402 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    825403 8vm2:B (1.74) BS03 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    825404 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    825405 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    825406 8vm2:C (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    825407 8voi:A (-1.00) BS01 MG ? N/A P11215 N/A
    825408 8vpo:A (1.66) BS01 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    825409 8vpo:A (1.66) BS02 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    825410 8vq1:A (1.3) BS01 QCV ? GO:0006355 ... Q4K977 38536910
    825411 8vq3:A (1.84) BS01 A1AC4 2.7.11.22 GO:0000082 ... P24941 38293178
    825412 8vq3:B (1.84) BS01 A1AC4 ? N/A P24864 38293178
    825413 8vq4:A (1.9) BS01 A1AC5 2.7.11.22 GO:0000082 ... P24941 38293178
    825414 8vq4:B (1.9) BS01 A1AC5 ? N/A P24864 38293178
    825415 8vql:A (2.29) BS01 A1ADD ? N/A P03452 38753503
    825416 8vql:B (2.29) BS01 A1ADD ? N/A P03452 38753503
    825417 8vqm:A (2.21) BS01 A1ADU ? N/A P03452 38753503
    825418 8vqm:B (2.21) BS01 A1ADU ? N/A P03452 38753503
    825419 8vqn:A (2.21) BS01 A1ADV ? N/A P03452 38753503
    825420 8vqn:B (2.21) BS01 A1ADV ? N/A P03452 38753503
    825421 8vqq:A (2.05) BS01 A1ADC ? N/A P03452 38753503
    825422 8vqq:B (2.05) BS01 A1ADC ? N/A P03452 38753503
    825423 8vqr:A (2.565) BS01 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    825424 8vqr:A (2.565) BS02 BMA 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    825425 8vqr:A (2.565) BS03 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    825426 8vqr:A (2.565) BS04 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    825427 8vqr:B (2.565) BS01 MAN 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    825428 8vqr:B (2.565) BS02 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    825429 8vqr:B (2.565) BS03 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23
    GO:0006508 ... B4XEP4
    Q9BYF1
    N/A
    825430 8vqw:C (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825431 8vqw:D (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825432 8vqz:A (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825433 8vqz:B (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825434 8vqz:C (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825435 8vqz:D (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825436 8vr0:A (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825437 8vr0:B (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825438 8vr0:C (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825439 8vr1:A (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825440 8vr1:B (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825441 8vr1:C (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825442 8vr1:D (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    825443 8vr2:A (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    825444 8vr2:A (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    825445 8vr2:B (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    825446 8vr2:B (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    825447 8vr2:C (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    825448 8vr2:C (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    825449 8vr2:D (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    825450 8vr2:D (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    825451 8vr3:B (2.0) BS01 A1ADI ? GO:0000271 ... Q1QD52 N/A
    825452 8vr5:A (2.2) BS01 PMP ? GO:0000271 ... Q1QD52 N/A
    825453 8vr5:A (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    825454 8vr5:B (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    825455 8vr5:B (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    825456 8vr5:C (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    825457 8vr5:C (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    825458 8vr5:D (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    825459 8vr5:D (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    825460 8vr6:A (1.9) BS01 5NG ? GO:0016740 ... Q1QD51 N/A
    825461 8vr7:A (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    825462 8vr7:A (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    825463 8vr7:B (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    825464 8vr7:B (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    825465 8vr7:B (1.9) BS03 EP1 ? GO:0016740 ... Q1QD51 N/A
    825466 8vr7:B (1.9) BS04 PAP ? GO:0016740 ... Q1QD51 N/A
    825467 8vr7:C (1.9) BS01 COA ? GO:0016740 ... Q1QD51 N/A
    825468 8vr7:C (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    825469 8vr7:D (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    825470 8vr7:D (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    825471 8vr7:E (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    825472 8vr7:E (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    825473 8vr7:E (1.9) BS03 PAP ? GO:0016740 ... Q1QD51 N/A
    825474 8vr7:F (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    825475 8vr7:F (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    825476 8vs9:L02 (3.9) BS01 rna ? GO:0000027 ... P60422 38500588
    825477 8vs9:L03 (3.9) BS01 rna ? GO:0000027 ... P60438 38500588
    825478 8vs9:L04 (3.9) BS01 rna ? GO:0003735 ... A1AGK6 38500588
    825479 8vs9:L05 (3.9) BS01 rna ? GO:0000049 ... A0A140N5A3 38500588
    825480 8vs9:L05 (3.9) BS02 rna ? GO:0000049 ... A0A140N5A3 38500588
    825481 8vs9:L05 (3.9) BS03 rna ? GO:0000049 ... A0A140N5A3 38500588
    825482 8vs9:L06 (3.9) BS01 rna ? GO:0002181 ... C3SR17 38500588
    825483 8vs9:L09 (3.9) BS01 rna ? GO:0003735 ... C3SFP2 38500588
    825484 8vs9:L1 (3.9) BS01 rna ? GO:0000049 ... B7MIX0 38500588
    825485 8vs9:L1 (3.9) BS02 rna ? GO:0000049 ... B7MIX0 38500588
    825486 8vs9:L10 (3.9) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    825487 8vs9:L11 (3.9) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    825488 8vs9:L14 (3.9) BS01 rna ? GO:0003735 ... S1NW45 38500588
    825489 8vs9:L14 (3.9) BS02 rna ? GO:0003735 ... S1NW45 38500588
    825490 8vs9:L15 (3.9) BS01 rna ? GO:0003735 ... A0A037Y8L6 38500588
    825491 8vs9:L16 (3.9) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    825492 8vs9:L16 (3.9) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    825493 8vs9:L16 (3.9) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    825494 8vs9:L17 (3.9) BS01 rna ? GO:0003735 ... C3SR72 38500588
    825495 8vs9:L20 (3.9) BS01 rna ? GO:0000027 ... B7MAS6 38500588
    825496 8vs9:L21 (3.9) BS01 rna ? GO:0003723 ... C3SSG2 38500588
    825497 8vs9:L22 (3.9) BS01 rna ? GO:0002181 ... P61175 38500588
    825498 8vs9:L27 (3.9) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    825499 8vs9:L27 (3.9) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    825500 8vs9:L28 (3.9) BS01 rna ? GO:0003735 ... A0A1X3JA73 38500588
    825501 8vs9:L30 (3.9) BS01 rna ? GO:0003735 ... C3SR32 38500588
    825502 8vs9:L30 (3.9) BS02 rna ? GO:0003735 ... C3SR32 38500588
    825503 8vs9:L31 (3.9) BS01 rna ? GO:0003735 ... C3SIV2 38500588
    825504 8vs9:L33 (3.9) BS01 rna ? GO:0003735 ... C3SME7 38500588
    825505 8vs9:L34 (3.9) BS01 rna ? GO:0003735 ... B7MGC4 38500588
    825506 8vs9:L35 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    825507 8vs9:L36 (3.9) BS01 rna ? GO:0003735 ... A0A0E2L017 38500588
    825508 8vs9:S02 (3.9) BS01 rna ? GO:0003735 ... C3TPN2 38500588
    825509 8vs9:S02 (3.9) BS02 rna ? GO:0003735 ... C3TPN2 38500588
    825510 8vs9:S03 (3.9) BS01 rna ? GO:0003676 ... B7MCS9 38500588
    825511 8vs9:S03 (3.9) BS02 rna ? GO:0003676 ... B7MCS9 38500588
    825512 8vs9:S04 (3.9) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    825513 8vs9:S05 (3.9) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    825514 8vs9:S05 (3.9) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    825515 8vs9:S06 (3.9) BS01 rna ? GO:0002181 ... P02358 38500588
    825516 8vs9:S07 (3.9) BS01 rna ? GO:0000028 ... P02359 38500588
    825517 8vs9:S07 (3.9) BS02 rna ? GO:0000028 ... P02359 38500588
    825518 8vs9:S09 (3.9) BS01 rna ? GO:0000028 ... C3SRY2 38500588
    825519 8vs9:S11 (3.9) BS01 rna ? GO:0003735 ... B7MCR3 38500588
    825520 8vs9:S12 (3.9) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    825521 8vs9:S13 (3.9) BS01 rna ? GO:0000049 ... A0A7U9IV78 38500588
    825522 8vs9:S13 (3.9) BS02 rna ? GO:0000049 ... A0A7U9IV78 38500588
    825523 8vs9:S14 (3.9) BS01 rna ? GO:0003735 ... A0A2X1PQW4 38500588
    825524 8vs9:S15 (3.9) BS01 rna ? GO:0000028 ... C3SSQ7 38500588
    825525 8vs9:S15 (3.9) BS02 rna ? GO:0000028 ... C3SSQ7 38500588
    825526 8vs9:S16 (3.9) BS01 rna ? GO:0000028 ... C3SYP2 38500588
    825527 8vs9:S17 (3.9) BS01 rna ? GO:0000028 ... C3SQY7 38500588
    825528 8vs9:S18 (3.9) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38500588
    825529 8vs9:S20 (3.9) BS01 rna ? GO:0000028 ... C3TRH7 38500588
    825530 8vs9:S21 (3.9) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38500588
    825531 8vs9:SMPB (3.9) BS01 rna ? GO:0003723 ... A0A2X1N680 38500588
    825532 8vs9:SMPB (3.9) BS02 rna ? GO:0003723 ... A0A2X1N680 38500588
    825533 8vs9:SMPB (3.9) BS03 rna ? GO:0003723 ... A0A2X1N680 38500588
    825534 8vs9:SMPB (3.9) BS04 rna ? GO:0003723 ... A0A2X1N680 38500588
    825535 8vsa:L02 (3.7) BS01 rna ? GO:0000027 ... P60422 38500588
    825536 8vsa:L02 (3.7) BS02 rna ? GO:0000027 ... P60422 38500588
    825537 8vsa:L03 (3.7) BS01 rna ? GO:0000027 ... P60438 38500588
    825538 8vsa:L04 (3.7) BS01 rna ? GO:0003735 ... A1AGK6 38500588
    825539 8vsa:L05 (3.7) BS01 rna ? GO:0000049 ... A0A140N5A3 38500588
    825540 8vsa:L05 (3.7) BS02 rna ? GO:0000049 ... A0A140N5A3 38500588
    825541 8vsa:L05 (3.7) BS03 rna ? GO:0000049 ... A0A140N5A3 38500588
    825542 8vsa:L06 (3.7) BS01 rna ? GO:0002181 ... C3SR17 38500588
    825543 8vsa:L09 (3.7) BS01 rna ? GO:0003735 ... C3SFP2 38500588
    825544 8vsa:L1 (3.7) BS01 rna ? GO:0000049 ... B7MIX0 38500588
    825545 8vsa:L10 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    825546 8vsa:L11 (3.7) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    825547 8vsa:L14 (3.7) BS01 rna ? GO:0003735 ... S1NW45 38500588
    825548 8vsa:L14 (3.7) BS02 rna ? GO:0003735 ... S1NW45 38500588
    825549 8vsa:L15 (3.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 38500588
    825550 8vsa:L16 (3.7) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    825551 8vsa:L16 (3.7) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    825552 8vsa:L16 (3.7) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    825553 8vsa:L17 (3.7) BS01 rna ? GO:0003735 ... C3SR72 38500588
    825554 8vsa:L20 (3.7) BS01 rna ? GO:0000027 ... B7MAS6 38500588
    825555 8vsa:L21 (3.7) BS01 rna ? GO:0003723 ... C3SSG2 38500588
    825556 8vsa:L22 (3.7) BS01 rna ? GO:0002181 ... P61175 38500588
    825557 8vsa:L27 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    825558 8vsa:L27 (3.7) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    825559 8vsa:L28 (3.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 38500588
    825560 8vsa:L30 (3.7) BS01 rna ? GO:0003735 ... C3SR32 38500588
    825561 8vsa:L30 (3.7) BS02 rna ? GO:0003735 ... C3SR32 38500588
    825562 8vsa:L31 (3.7) BS01 rna ? GO:0003735 ... C3SIV2 38500588
    825563 8vsa:L33 (3.7) BS01 rna ? GO:0003735 ... C3SME7 38500588
    825564 8vsa:L34 (3.7) BS01 rna ? GO:0003735 ... B7MGC4 38500588
    825565 8vsa:L35 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    825566 8vsa:L36 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L017 38500588
    825567 8vsa:S02 (3.7) BS01 rna ? GO:0003735 ... C3TPN2 38500588
    825568 8vsa:S02 (3.7) BS02 rna ? GO:0003735 ... C3TPN2 38500588
    825569 8vsa:S03 (3.7) BS01 rna ? GO:0003676 ... B7MCS9 38500588
    825570 8vsa:S03 (3.7) BS02 rna ? GO:0003676 ... B7MCS9 38500588
    825571 8vsa:S04 (3.7) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    825572 8vsa:S05 (3.7) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    825573 8vsa:S05 (3.7) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    825574 8vsa:S06 (3.7) BS01 rna ? GO:0002181 ... P02358 38500588
    825575 8vsa:S07 (3.7) BS01 rna ? GO:0000028 ... P02359 38500588
    825576 8vsa:S09 (3.7) BS01 rna ? GO:0000028 ... C3SRY2 38500588
    825577 8vsa:S11 (3.7) BS01 rna ? GO:0003735 ... B7MCR3 38500588
    825578 8vsa:S12 (3.7) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    825579 8vsa:S13 (3.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 38500588
    825580 8vsa:S13 (3.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 38500588
    825581 8vsa:S14 (3.7) BS01 rna ? GO:0003735 ... A0A2X1PQW4 38500588
    825582 8vsa:S15 (3.7) BS01 rna ? GO:0000028 ... C3SSQ7 38500588
    825583 8vsa:S15 (3.7) BS02 rna ? GO:0000028 ... C3SSQ7 38500588
    825584 8vsa:S16 (3.7) BS01 rna ? GO:0000028 ... C3SYP2 38500588
    825585 8vsa:S17 (3.7) BS01 rna ? GO:0000028 ... C3SQY7 38500588
    825586 8vsa:S18 (3.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38500588
    825587 8vsa:S20 (3.7) BS01 rna ? GO:0000028 ... C3TRH7 38500588
    825588 8vsa:S21 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38500588
    825589 8vsa:SMPB (3.7) BS01 rna ? GO:0003723 ... A0A2X1N680 38500588
    825590 8vsa:SMPB (3.7) BS02 rna ? GO:0003723 ... A0A2X1N680 38500588
    825591 8vsa:SMPB (3.7) BS03 rna ? GO:0003723 ... A0A2X1N680 38500588
    825592 8vsg:A (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38518735
    825593 8vsg:B (2.071) BS01 A1AD0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38518735
    825594 8vsh:A (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    825595 8vsh:B (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    825596 8vsh:C (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    825597 8vsh:D (2.0) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    825598 8vsi:A (3.1) BS01 MG 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    825599 8vsi:A (3.1) BS02 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742
    825600 8vsi:A (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A1D7Q186 38540742

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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