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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    821401 8ufc:V (3.09) BS01 CA ? N/A P98155 38176410
    821402 8ufc:V (3.09) BS02 CA ? N/A P98155 38176410
    821403 8ufc:W (3.09) BS01 CA ? N/A P98155 38176410
    821404 8ufc:W (3.09) BS02 CA ? N/A P98155 38176410
    821405 8ufc:X (3.09) BS01 CA ? N/A P98155 38176410
    821406 8ufc:X (3.09) BS02 CA ? N/A P98155 38176410
    821407 8ufc:Y (3.09) BS01 CA ? N/A P98155 38176410
    821408 8ufc:Y (3.09) BS02 CA ? N/A P98155 38176410
    821409 8ufg:F (3.1) BS01 WJR ? GO:0005886 ... Q6FFD7 38172635
    821410 8ufg:G (3.1) BS01 WJR ? GO:0005886 ... Q6FFD6 38172635
    821411 8ufh:F (3.2) BS01 WJW ? GO:0005886 ... Q6FFD7 38172635
    821412 8ufh:F (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD7 38172635
    821413 8ufh:G (3.2) BS01 WJW ? GO:0005886 ... Q6FFD6 38172635
    821414 8ufh:G (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD6 38172635
    821415 8ufi:A (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    821416 8ufi:A (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    821417 8ufi:B (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    821418 8ufi:B (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    821419 8ufj:A (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    821420 8ufj:A (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    821421 8ufj:B (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    821422 8ufj:B (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    821423 8ufj:C (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    821424 8ufj:C (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    821425 8ufp:A (1.9) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    821426 8ufp:A (1.9) BS02 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    821427 8ufp:A (1.9) BS03 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    821428 8ufp:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    821429 8ufp:A (1.9) BS05 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    821430 8ufp:B (1.9) BS01 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    821431 8ufp:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    821432 8ufp:B (1.9) BS03 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    821433 8ufp:B (1.9) BS04 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    821434 8ufp:B (1.9) BS05 WK2 1.14.13.39 GO:0004517 ... P29475 38417024
    821435 8ufq:A (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    821436 8ufq:A (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    821437 8ufq:A (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821438 8ufq:A (1.98) BS04 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821439 8ufq:B (1.98) BS01 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    821440 8ufq:B (1.98) BS02 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821441 8ufq:B (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821442 8ufq:B (1.98) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    821443 8ufq:C (1.98) BS01 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    821444 8ufq:C (1.98) BS02 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821445 8ufq:C (1.98) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    821446 8ufq:C (1.98) BS04 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821447 8ufq:D (1.98) BS01 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821448 8ufq:D (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    821449 8ufq:D (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    821450 8ufq:D (1.98) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    821451 8ufr:A (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821452 8ufr:A (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821453 8ufr:A (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821454 8ufr:A (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821455 8ufr:A (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821456 8ufr:B (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821457 8ufr:B (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821458 8ufr:B (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821459 8ufr:B (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821460 8ufr:B (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821461 8ufr:C (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821462 8ufr:C (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821463 8ufr:C (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821464 8ufr:C (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821465 8ufr:C (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821466 8ufr:D (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821467 8ufr:D (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821468 8ufr:D (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821469 8ufr:D (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821470 8ufr:D (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821471 8ufs:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821472 8ufs:A (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821473 8ufs:A (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821474 8ufs:A (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821475 8ufs:B (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821476 8ufs:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821477 8ufs:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821478 8ufs:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821479 8ufs:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821480 8ufs:C (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821481 8ufs:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821482 8ufs:C (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821483 8ufs:D (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821484 8ufs:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821485 8ufs:D (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821486 8ufs:D (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821487 8uft:A (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821488 8uft:A (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821489 8uft:A (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821490 8uft:A (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821491 8uft:A (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821492 8uft:B (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821493 8uft:B (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821494 8uft:B (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821495 8uft:B (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821496 8uft:B (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821497 8uft:C (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821498 8uft:C (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821499 8uft:C (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821500 8uft:C (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821501 8uft:C (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821502 8uft:D (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821503 8uft:D (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821504 8uft:D (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821505 8uft:D (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    821506 8uft:D (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    821507 8ufu:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821508 8ufu:A (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821509 8ufu:A (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821510 8ufu:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821511 8ufu:A (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821512 8ufu:B (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821513 8ufu:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821514 8ufu:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821515 8ufu:B (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821516 8ufu:B (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821517 8ufu:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821518 8ufu:C (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821519 8ufu:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821520 8ufu:C (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821521 8ufu:D (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821522 8ufu:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    821523 8ufu:D (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821524 8ufu:D (2.05) BS04 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    821525 8ufu:D (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    821526 8ug1:A (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    821527 8ug1:B (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    821528 8ug3:A (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    821529 8ug3:B (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    821530 8ugb:A (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P11541 38159849
    821531 8ugb:A (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    821532 8ugb:A (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    821533 8ugb:A (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P11541 38159849
    821534 8ugb:B (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P23439 38159849
    821535 8ugb:B (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    821536 8ugb:B (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    821537 8ugb:B (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P23439 38159849
    821538 8ugq:A (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821539 8ugq:B (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821540 8ugq:B (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821541 8ugq:C (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821542 8ugq:C (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821543 8ugq:D (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821544 8ugq:D (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821545 8ugq:E (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821546 8ugq:E (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821547 8ugq:F (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821548 8ugq:F (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821549 8ugq:G (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821550 8ugq:G (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821551 8ugq:H (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821552 8ugq:H (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821553 8ugq:I (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821554 8ugq:I (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821555 8ugq:J (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821556 8ugq:J (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821557 8ugq:K (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    821558 8ugq:K (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    821559 8ugs:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    821560 8ugs:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    821561 8ugs:A (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    821562 8ugs:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    821563 8ugs:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    821564 8ugs:B (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    821565 8ugy:R (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    821566 8ugy:R (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    821567 8ugy:R (3.31) BS03 WRU ? GO:0001586 ... P28566 38630816
    821568 8ugz:A (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    821569 8ugz:B (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    821570 8ugz:C (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    821571 8ugz:D (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    821572 8uh0:A (2.73) BS01 WRN ? GO:0005085 ... Q07890 38156904
    821573 8uh3:D (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    821574 8uh3:D (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    821575 8uh3:D (3.31) BS03 CLR ? GO:0001586 ... P28566 38630816
    821576 8uh3:D (3.31) BS04 WOQ ? GO:0001586 ... P28566 38630816
    821577 8uh4:1 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821578 8uh4:1 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821579 8uh4:2 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821580 8uh4:2 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821581 8uh4:3 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821582 8uh4:3 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821583 8uh4:4 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821584 8uh4:4 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821585 8uh4:5 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821586 8uh4:5 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821587 8uh4:6 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821588 8uh4:6 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821589 8uh4:7 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821590 8uh4:7 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821591 8uh4:8 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821592 8uh4:8 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821593 8uh4:A (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821594 8uh4:A (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821595 8uh4:B (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821596 8uh4:B (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821597 8uh4:C (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821598 8uh4:C (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    821599 8uh4:D (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    821600 8uh4:D (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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