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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    821001 8ud8:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    821002 8ud8:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    821003 8ud8:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    821004 8ud8:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    821005 8ud8:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    821006 8ud8:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    821007 8ud8:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    821008 8ud8:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    821009 8ud8:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    821010 8ud8:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    821011 8ud8:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    821012 8ud8:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    821013 8ud8:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 38359125
    821014 8ud8:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    821015 8ud8:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    821016 8ud8:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    821017 8ud8:1N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    821018 8ud8:1N (2.6) BS02 MG ? GO:0003729 ... P60488 38359125
    821019 8ud8:1N (2.6) BS03 MG ? GO:0003729 ... P60488 38359125
    821020 8ud8:1N (2.6) BS04 MG ? GO:0003729 ... P60488 38359125
    821021 8ud8:1N (2.6) BS05 MG ? GO:0003729 ... P60488 38359125
    821022 8ud8:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    821023 8ud8:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    821024 8ud8:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    821025 8ud8:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    821026 8ud8:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    821027 8ud8:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    821028 8ud8:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    821029 8ud8:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    821030 8ud8:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    821031 8ud8:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    821032 8ud8:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    821033 8ud8:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    821034 8ud8:1Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    821035 8ud8:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    821036 8ud8:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    821037 8ud8:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    821038 8ud8:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    821039 8ud8:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    821040 8ud8:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    821041 8ud8:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    821042 8ud8:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    821043 8ud8:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    821044 8ud8:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    821045 8ud8:1T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    821046 8ud8:1T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    821047 8ud8:1U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    821048 8ud8:1U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    821049 8ud8:1U (2.6) BS03 MG ? GO:0000027 ... P60491 38359125
    821050 8ud8:1U (2.6) BS04 MG ? GO:0000027 ... P60491 38359125
    821051 8ud8:1U (2.6) BS05 MG ? GO:0000027 ... P60491 38359125
    821052 8ud8:1U (2.6) BS06 MG ? GO:0000027 ... P60491 38359125
    821053 8ud8:1U (2.6) BS07 MG ? GO:0000027 ... P60491 38359125
    821054 8ud8:1U (2.6) BS08 MG ? GO:0000027 ... P60491 38359125
    821055 8ud8:1U (2.6) BS09 MG ? GO:0000027 ... P60491 38359125
    821056 8ud8:1U (2.6) BS10 MG ? GO:0000027 ... P60491 38359125
    821057 8ud8:1V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    821058 8ud8:1V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    821059 8ud8:1V (2.6) BS03 MG ? GO:0003723 ... P60492 38359125
    821060 8ud8:1V (2.6) BS04 MG ? GO:0003723 ... P60492 38359125
    821061 8ud8:1V (2.6) BS05 MG ? GO:0003723 ... P60492 38359125
    821062 8ud8:1V (2.6) BS06 MG ? GO:0003723 ... P60492 38359125
    821063 8ud8:1V (2.6) BS07 MG ? GO:0003723 ... P60492 38359125
    821064 8ud8:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    821065 8ud8:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    821066 8ud8:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    821067 8ud8:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    821068 8ud8:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    821069 8ud8:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    821070 8ud8:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    821071 8ud8:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    821072 8ud8:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    821073 8ud8:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    821074 8ud8:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    821075 8ud8:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    821076 8ud8:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    821077 8ud8:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    821078 8ud8:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    821079 8ud8:1b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    821080 8ud8:1c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    821081 8ud8:1d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    821082 8ud8:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 38359125
    821083 8ud8:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    821084 8ud8:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    821085 8ud8:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    821086 8ud8:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    821087 8ud8:1g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    821088 8ud8:1g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    821089 8ud8:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    821090 8ud8:1i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    821091 8ud8:1i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    821092 8ud8:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    821093 8ud8:1k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    821094 8ud8:1k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    821095 8ud8:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    821096 8ud8:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    821097 8ud8:1m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    821098 8ud8:1m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    821099 8ud8:1m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    821100 8ud8:1m (2.6) BS04 MG ? GO:0000049 ... P80377 38359125
    821101 8ud8:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    821102 8ud8:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    821103 8ud8:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    821104 8ud8:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    821105 8ud8:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    821106 8ud8:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    821107 8ud8:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    821108 8ud8:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    821109 8ud8:1t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    821110 8ud8:20 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    821111 8ud8:20 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    821112 8ud8:20 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    821113 8ud8:21 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    821114 8ud8:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    821115 8ud8:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    821116 8ud8:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    821117 8ud8:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    821118 8ud8:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    821119 8ud8:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    821120 8ud8:25 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    821121 8ud8:25 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    821122 8ud8:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 38359125
    821123 8ud8:26 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    821124 8ud8:26 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    821125 8ud8:26 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    821126 8ud8:27 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    821127 8ud8:27 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    821128 8ud8:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    821129 8ud8:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    821130 8ud8:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    821131 8ud8:2D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    821132 8ud8:2D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    821133 8ud8:2D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    821134 8ud8:2D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    821135 8ud8:2D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    821136 8ud8:2D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    821137 8ud8:2D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    821138 8ud8:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    821139 8ud8:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    821140 8ud8:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    821141 8ud8:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    821142 8ud8:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    821143 8ud8:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    821144 8ud8:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    821145 8ud8:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    821146 8ud8:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    821147 8ud8:2G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    821148 8ud8:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    821149 8ud8:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    821150 8ud8:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    821151 8ud8:2N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    821152 8ud8:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    821153 8ud8:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    821154 8ud8:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    821155 8ud8:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    821156 8ud8:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    821157 8ud8:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    821158 8ud8:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    821159 8ud8:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    821160 8ud8:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    821161 8ud8:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    821162 8ud8:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    821163 8ud8:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    821164 8ud8:2T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    821165 8ud8:2T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    821166 8ud8:2T (2.6) BS03 MG ? GO:0003735 ... P60490 38359125
    821167 8ud8:2U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    821168 8ud8:2U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    821169 8ud8:2V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    821170 8ud8:2V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    821171 8ud8:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    821172 8ud8:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    821173 8ud8:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    821174 8ud8:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    821175 8ud8:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    821176 8ud8:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    821177 8ud8:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    821178 8ud8:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    821179 8ud8:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 38359125
    821180 8ud8:2b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    821181 8ud8:2c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    821182 8ud8:2d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    821183 8ud8:2d (2.6) BS02 MG ? GO:0003723 ... P80373 38359125
    821184 8ud8:2d (2.6) BS03 SF4 ? GO:0003723 ... P80373 38359125
    821185 8ud8:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    821186 8ud8:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    821187 8ud8:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    821188 8ud8:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    821189 8ud8:2g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    821190 8ud8:2g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    821191 8ud8:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    821192 8ud8:2i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    821193 8ud8:2i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    821194 8ud8:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    821195 8ud8:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 38359125
    821196 8ud8:2k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    821197 8ud8:2k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    821198 8ud8:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    821199 8ud8:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    821200 8ud8:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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