Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4095 4096 4097 4098 4099 4100 4101 4102 4103 4104 4105 4106 4107 4108 4109 4110 4111 4112 4113 4114 4115 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    820801 8ud7:1W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    820802 8ud7:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    820803 8ud7:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    820804 8ud7:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    820805 8ud7:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    820806 8ud7:1W (2.55) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    820807 8ud7:1X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    820808 8ud7:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    820809 8ud7:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    820810 8ud7:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    820811 8ud7:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    820812 8ud7:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    820813 8ud7:1Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    820814 8ud7:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    820815 8ud7:1Y (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    820816 8ud7:1Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    820817 8ud7:1Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    820818 8ud7:1b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    820819 8ud7:1c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    820820 8ud7:1d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    820821 8ud7:1d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    820822 8ud7:1e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    820823 8ud7:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    820824 8ud7:1f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    820825 8ud7:1g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    820826 8ud7:1g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    820827 8ud7:1h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    820828 8ud7:1i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    820829 8ud7:1i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    820830 8ud7:1j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    820831 8ud7:1k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    820832 8ud7:1k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    820833 8ud7:1l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    820834 8ud7:1l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    820835 8ud7:1m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    820836 8ud7:1m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    820837 8ud7:1m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    820838 8ud7:1m (2.55) BS04 MG ? GO:0000049 ... P80377 38359125
    820839 8ud7:1n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    820840 8ud7:1n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    820841 8ud7:1o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    820842 8ud7:1o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    820843 8ud7:1p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    820844 8ud7:1q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    820845 8ud7:1r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    820846 8ud7:1s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    820847 8ud7:1t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    820848 8ud7:1t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    820849 8ud7:20 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    820850 8ud7:20 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    820851 8ud7:20 (2.55) BS03 rna ? GO:0003735 ... P60493 38359125
    820852 8ud7:21 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    820853 8ud7:22 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    820854 8ud7:23 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    820855 8ud7:23 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    820856 8ud7:24 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    820857 8ud7:24 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    820858 8ud7:25 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    820859 8ud7:25 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    820860 8ud7:25 (2.55) BS03 ZN ? GO:0003735 ... P80339 38359125
    820861 8ud7:26 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    820862 8ud7:26 (2.55) BS02 ZN ? GO:0000049 ... P35871 38359125
    820863 8ud7:27 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    820864 8ud7:27 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    820865 8ud7:27 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    820866 8ud7:28 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    820867 8ud7:29 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    820868 8ud7:29 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    820869 8ud7:2D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    820870 8ud7:2D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    820871 8ud7:2D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    820872 8ud7:2D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    820873 8ud7:2D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    820874 8ud7:2D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    820875 8ud7:2D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    820876 8ud7:2E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    820877 8ud7:2F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    820878 8ud7:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    820879 8ud7:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    820880 8ud7:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    820881 8ud7:2G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    820882 8ud7:2G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    820883 8ud7:2G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    820884 8ud7:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    820885 8ud7:2H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    820886 8ud7:2I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    820887 8ud7:2N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    820888 8ud7:2O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    820889 8ud7:2O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    820890 8ud7:2P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    820891 8ud7:2Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    820892 8ud7:2Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    820893 8ud7:2Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    820894 8ud7:2Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    820895 8ud7:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    820896 8ud7:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    820897 8ud7:2R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    820898 8ud7:2S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    820899 8ud7:2S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    820900 8ud7:2T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    820901 8ud7:2T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    820902 8ud7:2U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    820903 8ud7:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    820904 8ud7:2V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    820905 8ud7:2V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    820906 8ud7:2W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    820907 8ud7:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    820908 8ud7:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    820909 8ud7:2X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    820910 8ud7:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    820911 8ud7:2Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    820912 8ud7:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    820913 8ud7:2Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    820914 8ud7:2Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    820915 8ud7:2b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    820916 8ud7:2c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    820917 8ud7:2d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    820918 8ud7:2d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    820919 8ud7:2e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    820920 8ud7:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    820921 8ud7:2f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    820922 8ud7:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    820923 8ud7:2g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    820924 8ud7:2g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    820925 8ud7:2h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    820926 8ud7:2i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    820927 8ud7:2i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    820928 8ud7:2j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    820929 8ud7:2k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    820930 8ud7:2k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    820931 8ud7:2l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    820932 8ud7:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    820933 8ud7:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    820934 8ud7:2l (2.55) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    820935 8ud7:2m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    820936 8ud7:2m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    820937 8ud7:2m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    820938 8ud7:2n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    820939 8ud7:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    820940 8ud7:2o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    820941 8ud7:2o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    820942 8ud7:2p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    820943 8ud7:2q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    820944 8ud7:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    820945 8ud7:2r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    820946 8ud7:2s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    820947 8ud7:2t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    820948 8ud7:2t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    820949 8ud8:10 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    820950 8ud8:10 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    820951 8ud8:10 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    820952 8ud8:10 (2.6) BS04 MG ? GO:0003735 ... P60493 38359125
    820953 8ud8:10 (2.6) BS05 MG ? GO:0003735 ... P60493 38359125
    820954 8ud8:11 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    820955 8ud8:11 (2.6) BS02 rna ? GO:0003735 ... P60494 38359125
    820956 8ud8:11 (2.6) BS03 MG ? GO:0003735 ... P60494 38359125
    820957 8ud8:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    820958 8ud8:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    820959 8ud8:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    820960 8ud8:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    820961 8ud8:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    820962 8ud8:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    820963 8ud8:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    820964 8ud8:15 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    820965 8ud8:15 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    820966 8ud8:15 (2.6) BS03 MG ? GO:0003735 ... P80339 38359125
    820967 8ud8:15 (2.6) BS04 MG ? GO:0003735 ... P80339 38359125
    820968 8ud8:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 38359125
    820969 8ud8:16 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    820970 8ud8:16 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    820971 8ud8:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    820972 8ud8:17 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    820973 8ud8:17 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    820974 8ud8:17 (2.6) BS03 MG ? GO:0003735 ... P80340 38359125
    820975 8ud8:17 (2.6) BS04 MG ? GO:0003735 ... P80340 38359125
    820976 8ud8:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    820977 8ud8:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    820978 8ud8:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    820979 8ud8:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    820980 8ud8:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    820981 8ud8:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    820982 8ud8:1D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    820983 8ud8:1D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    820984 8ud8:1D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    820985 8ud8:1D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    820986 8ud8:1D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    820987 8ud8:1D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    820988 8ud8:1D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    820989 8ud8:1D (2.6) BS08 MG ? GO:0002181 ... P60405 38359125
    820990 8ud8:1D (2.6) BS09 MG ? GO:0002181 ... P60405 38359125
    820991 8ud8:1D (2.6) BS10 MG ? GO:0002181 ... P60405 38359125
    820992 8ud8:1D (2.6) BS11 MG ? GO:0002181 ... P60405 38359125
    820993 8ud8:1D (2.6) BS12 MG ? GO:0002181 ... P60405 38359125
    820994 8ud8:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    820995 8ud8:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    820996 8ud8:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    820997 8ud8:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    820998 8ud8:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    820999 8ud8:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    821000 8ud8:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218