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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    819401 8tym:B (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    819402 8tym:C (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    819403 8tym:C (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    819404 8tym:c (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    819405 8tym:c (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    819406 8tym:f (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    819407 8tym:f (3.58) BS02 MG 3.6.5.5 N/A Q05193 38663399
    819408 8tyn:C (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    819409 8tyn:C (3.26) BS02 MG 3.6.5.5 N/A Q05193 38663399
    819410 8tyn:F (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    819411 8tyn:F (3.26) BS02 MG 3.6.5.5 N/A Q05193 38663399
    819412 8tyn:c (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    819413 8tyn:f (3.26) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    819414 8typ:A (1.8) BS01 SQT 3.4.21.42 GO:0004252 ... P09871 38149922
    819415 8tyq:A (2.99) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    819416 8tys:A (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    819417 8tys:C (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    819418 8tys:D (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    819419 8tys:F (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    819420 8tyv:A (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    819421 8tyv:B (1.85) BS01 I8P ? N/A Q9UBH6 N/A
    819422 8tz1:A (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    819423 8tz1:A (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819424 8tz1:A (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819425 8tz1:A (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819426 8tz1:A (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    819427 8tz1:B (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    819428 8tz1:B (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819429 8tz1:B (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819430 8tz1:B (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819431 8tz1:B (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    819432 8tz1:C (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    819433 8tz1:C (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819434 8tz1:C (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819435 8tz1:C (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819436 8tz1:C (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    819437 8tz2:A (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    819438 8tz2:A (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819439 8tz2:B (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    819440 8tz2:B (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819441 8tz2:C (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    819442 8tz2:C (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819443 8tz3:A (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    819444 8tz3:A (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819445 8tz3:A (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819446 8tz3:B (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    819447 8tz3:B (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819448 8tz3:B (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819449 8tz3:C (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    819450 8tz3:C (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819451 8tz3:C (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819452 8tz4:A (3.23) BS01 U08 ? GO:0005337 ... F1MGR1 38418906
    819453 8tz5:A (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    819454 8tz5:A (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819455 8tz5:A (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819456 8tz5:A (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819457 8tz5:A (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    819458 8tz5:B (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    819459 8tz5:B (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819460 8tz5:B (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819461 8tz5:B (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819462 8tz5:B (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    819463 8tz5:C (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    819464 8tz5:C (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819465 8tz5:C (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819466 8tz5:C (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819467 8tz5:C (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    819468 8tz6:A (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    819469 8tz6:A (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819470 8tz6:A (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819471 8tz6:A (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819472 8tz6:B (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    819473 8tz6:B (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819474 8tz6:B (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819475 8tz6:B (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819476 8tz6:C (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    819477 8tz6:C (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819478 8tz6:C (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    819479 8tz6:C (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    819480 8tz7:A (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819481 8tz7:A (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819482 8tz7:B (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819483 8tz7:B (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819484 8tz7:C (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819485 8tz7:C (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819486 8tz8:A (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819487 8tz8:A (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819488 8tz8:B (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819489 8tz8:C (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819490 8tz8:C (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819491 8tz9:A (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819492 8tz9:B (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819493 8tz9:C (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819494 8tza:A (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819495 8tza:B (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819496 8tza:C (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819497 8tzb:A (3.1) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    819498 8tzc:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    819499 8tzc:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    819500 8tzd:A (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819501 8tzd:A (3.2) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    819502 8tzd:B (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819503 8tzd:C (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    819504 8tze:A (2.9) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    819505 8tzf:A (3.4) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    819506 8tzf:A (3.4) BS02 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    819507 8tzg:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    819508 8tzg:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    819509 8tzg:A (2.7) BS03 MG 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    819510 8tzh:A (3.9) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    819511 8tzh:A (3.9) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    819512 8tzj:A (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    819513 8tzj:B (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    819514 8tzk:A (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    819515 8tzk:B (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    819516 8tzl:A (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    819517 8tzl:B (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    819518 8tzo:C (3.1) BS01 BMA ? GO:0005509 ... P27797 37852257
    819519 8tzo:C (3.1) BS02 MAN ? GO:0005509 ... P27797 37852257
    819520 8tzo:C (3.1) BS03 MAN ? GO:0005509 ... P27797 37852257
    819521 8tzo:C (3.1) BS04 GLC ? GO:0005509 ... P27797 37852257
    819522 8tzo:C (3.1) BS05 CA ? GO:0005509 ... P27797 37852257
    819523 8tzr:C (3.5) BS01 BMA ? GO:0005509 ... P27797 N/A
    819524 8tzr:C (3.5) BS02 MAN ? GO:0005509 ... P27797 N/A
    819525 8tzr:C (3.5) BS03 MAN ? GO:0005509 ... P27797 N/A
    819526 8tzz:A (3.56) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819527 8tzz:A (3.56) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819528 8tzz:A (3.56) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819529 8tzz:A (3.56) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    819530 8u00:A (1.85) BS01 ZN ? N/A Q9A6F5 N/A
    819531 8u00:A (1.85) BS02 ZN ? N/A Q9A6F5 N/A
    819532 8u00:A (1.85) BS03 ZN ? N/A Q9A6F5 N/A
    819533 8u00:B (1.85) BS01 ZN ? N/A Q9A6F5 N/A
    819534 8u00:B (1.85) BS02 ZN ? N/A Q9A6F5 N/A
    819535 8u00:B (1.85) BS03 ZN ? N/A Q9A6F5 N/A
    819536 8u0k:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819537 8u0k:A (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819538 8u0k:B (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819539 8u0k:B (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819540 8u0l:A (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819541 8u0l:A (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819542 8u0l:B (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819543 8u0l:B (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819544 8u0m:A (2.54) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819545 8u0m:A (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819546 8u0m:B (2.54) BS01 ATP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819547 8u0m:B (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819548 8u0n:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819549 8u0n:A (2.5) BS02 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819550 8u0n:B (2.5) BS01 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819551 8u0n:B (2.5) BS02 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    819552 8u0o:A (2.05) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819553 8u0o:A (2.05) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819554 8u0p:A (1.9) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819555 8u0p:A (1.9) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819556 8u0p:A (1.9) BS03 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819557 8u0p:A (1.9) BS04 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819558 8u0p:A (1.9) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819559 8u0p:A (1.9) BS06 DUP 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    819560 8u0q:A (1.69) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    819561 8u0q:A (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    819562 8u0q:A (1.69) BS03 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    819563 8u0q:B (1.69) BS01 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    819564 8u0q:B (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    819565 8u0q:B (1.69) BS03 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    819566 8u0t:A (3.2) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... A0A0N7IQX6 37989312
    819567 8u0v:A (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    819568 8u0v:A (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    819569 8u0v:B (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    819570 8u0v:B (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    819571 8u0v:C (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    819572 8u0v:C (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    819573 8u0v:C (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    819574 8u0v:D (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    819575 8u0v:D (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    819576 8u0v:D (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    819577 8u0v:E (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    819578 8u0v:E (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    819579 8u0v:F (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    819580 8u0z:A (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    819581 8u0z:B (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    819582 8u13:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    819583 8u13:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    819584 8u13:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    819585 8u13:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    819586 8u13:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    819587 8u13:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    819588 8u13:D (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    819589 8u13:D (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    819590 8u13:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    819591 8u13:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    819592 8u13:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    819593 8u13:F (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    819594 8u13:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    819595 8u13:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    819596 8u13:H (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    819597 8u13:H (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    819598 8u13:K (3.8) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    819599 8u13:K (3.8) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    819600 8u14:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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