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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    819201 8tvp:E (3.7) BS01 dna ? GO:0000428 ... P20434 38194460
    819202 8tvp:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    819203 8tvp:I (3.7) BS02 ZN ? GO:0000428 ... P27999 38194460
    819204 8tvp:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    819205 8tvp:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    819206 8tvq:A (4.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819207 8tvq:A (4.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819208 8tvq:A (4.6) BS03 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    819209 8tvq:A (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819210 8tvq:A (4.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819211 8tvq:A (4.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    819212 8tvq:B (4.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819213 8tvq:B (4.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819214 8tvq:B (4.6) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    819215 8tvq:B (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    819216 8tvq:C (4.6) BS01 ZN ? GO:0000428 ... P16370 38194460
    819217 8tvq:I (4.6) BS01 ZN ? GO:0000428 ... P27999 38194460
    819218 8tvq:J (4.6) BS01 ZN ? GO:0000428 ... P22139 38194460
    819219 8tvq:L (4.6) BS01 ZN ? GO:0000428 ... P40422 38194460
    819220 8tvs:A (4.4) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819221 8tvs:A (4.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819222 8tvs:A (4.4) BS03 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    819223 8tvs:A (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819224 8tvs:A (4.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819225 8tvs:A (4.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    819226 8tvs:B (4.4) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819227 8tvs:B (4.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819228 8tvs:B (4.4) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    819229 8tvs:B (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    819230 8tvs:C (4.4) BS01 ZN ? GO:0000428 ... P16370 38194460
    819231 8tvs:I (4.4) BS01 ZN ? GO:0000428 ... P27999 38194460
    819232 8tvs:I (4.4) BS02 ZN ? GO:0000428 ... P27999 38194460
    819233 8tvs:J (4.4) BS01 ZN ? GO:0000428 ... P22139 38194460
    819234 8tvs:L (4.4) BS01 ZN ? GO:0000428 ... P40422 38194460
    819235 8tvv:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819236 8tvv:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    819237 8tvv:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819238 8tvv:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819239 8tvv:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    819240 8tvv:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819241 8tvv:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    819242 8tvv:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    819243 8tvv:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    819244 8tvv:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    819245 8tvv:I (3.7) BS02 ZN ? GO:0000428 ... P27999 38194460
    819246 8tvv:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    819247 8tvv:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    819248 8tvw:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819249 8tvw:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    819250 8tvw:A (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819251 8tvw:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819252 8tvw:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    819253 8tvw:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819254 8tvw:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    819255 8tvw:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    819256 8tvw:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38194460
    819257 8tvw:E (3.6) BS01 dna ? GO:0000428 ... P20434 38194460
    819258 8tvw:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38194460
    819259 8tvw:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38194460
    819260 8tvw:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38194460
    819261 8tvw:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38194460
    819262 8tvx:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819263 8tvx:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    819264 8tvx:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819265 8tvx:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819266 8tvx:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    819267 8tvx:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819268 8tvx:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    819269 8tvx:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    819270 8tvx:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    819271 8tvx:E (3.7) BS01 dna ? GO:0000428 ... P20434 38194460
    819272 8tvx:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    819273 8tvx:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    819274 8tvx:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    819275 8tvy:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    819276 8tvy:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    819277 8tvy:A (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    819278 8tvy:A (3.1) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    819279 8tvy:B (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819280 8tvy:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    819281 8tvy:B (3.1) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    819282 8tvy:B (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    819283 8tvy:C (3.1) BS01 ZN ? GO:0000428 ... P16370 38194460
    819284 8tvy:E (3.1) BS01 dna ? GO:0000428 ... P20434 38194460
    819285 8tvy:I (3.1) BS01 ZN ? GO:0000428 ... P27999 38194460
    819286 8tvy:I (3.1) BS02 ZN ? GO:0000428 ... P27999 38194460
    819287 8tvy:M (3.1) BS01 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    819288 8tvy:M (3.1) BS02 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    819289 8twe:A (2.55) BS01 peptide ? GO:0000159 ... P30153 38123684
    819290 8twe:B (2.55) BS01 peptide ? GO:0000159 ... P63151 38123684
    819291 8twe:B (2.55) BS02 peptide ? GO:0000159 ... P63151 38123684
    819292 8twi:C (2.69) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 38123684
    819293 8twi:C (2.69) BS02 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    819294 8twi:C (2.69) BS03 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    819295 8twj:A (1.9) BS01 UDP ? GO:0005576 ... P13835 38354245
    819296 8two:A (2.09) BS01 peptide ? GO:0005576 ... P13835 38354245
    819297 8two:A (2.09) BS02 UDP ? GO:0005576 ... P13835 38354245
    819298 8two:A (2.09) BS03 RAM ? GO:0005576 ... P13835 38354245
    819299 8tws:A (2.85) BS01 peptide ? GO:0005576 ... P13835 38354245
    819300 8tws:A (2.85) BS02 AWU ? GO:0005576 ... P13835 38354245
    819301 8twu:A (1.84) BS01 HEM ? GO:0004497 ... A0A9X9ZA09 37611404
    819302 8twu:A (1.84) BS02 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    819303 8twu:A (1.84) BS03 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    819304 8twu:A (1.84) BS04 ZN ? GO:0004497 ... A0A9X9ZA09 37611404
    819305 8twv:A (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819306 8twv:B (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819307 8twv:C (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819308 8twv:D (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819309 8twv:E (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819310 8twz:A (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819311 8twz:B (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819312 8twz:C (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819313 8twz:D (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819314 8twz:E (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    819315 8txe:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    819316 8txe:A (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    819317 8txe:B (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    819318 8txe:B (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    819319 8txf:A (1.29) BS01 peptide ? GO:0005576 ... P13835 38354245
    819320 8txg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    819321 8txg:A (1.5) BS02 VQT 3.6.5.2 GO:0003924 ... P01116 37849557
    819322 8txh:A (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    819323 8txh:A (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    819324 8txh:B (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    819325 8txh:B (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    819326 8txn:A (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    819327 8txn:A (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    819328 8txn:D (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    819329 8txn:D (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    819330 8txo:I (3.1) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    819331 8txo:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    819332 8txo:I (3.1) BS03 S9F 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    819333 8txo:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    819334 8txo:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    819335 8txo:J (3.1) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    819336 8txo:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    819337 8txo:J (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    819338 8txo:J (3.1) BS06 S9F 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    819339 8txv:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    819340 8txv:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    819341 8txv:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    819342 8txv:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    819343 8txv:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    819344 8txv:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    819345 8txv:D (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    819346 8txv:D (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    819347 8txv:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    819348 8txv:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    819349 8txv:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    819350 8txv:F (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    819351 8txv:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    819352 8txv:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    819353 8txv:G (3.8) BS03 peptide ? GO:0000786 ... P04908 38242129
    819354 8txv:H (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    819355 8txv:H (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    819356 8txv:H (3.8) BS03 peptide ? GO:0000786 ... P62807 38242129
    819357 8txw:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    819358 8txw:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    819359 8txw:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    819360 8txw:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    819361 8txw:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    819362 8txw:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    819363 8txw:D (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    819364 8txw:D (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    819365 8txw:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    819366 8txw:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    819367 8txw:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    819368 8txw:F (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    819369 8txw:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    819370 8txw:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    819371 8txw:G (3.6) BS03 peptide ? GO:0000786 ... P04908 38242129
    819372 8txw:H (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    819373 8txw:H (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    819374 8txw:H (3.6) BS03 peptide ? GO:0000786 ... P62807 38242129
    819375 8txw:M (3.6) BS01 peptide ? N/A P0CG47 38242129
    819376 8txx:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    819377 8txx:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    819378 8txx:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    819379 8txx:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    819380 8txx:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    819381 8txx:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    819382 8txx:D (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    819383 8txx:D (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    819384 8txx:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    819385 8txx:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    819386 8txx:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    819387 8txx:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    819388 8txx:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    819389 8txx:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    819390 8txx:H (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    819391 8txx:H (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    819392 8txx:K (3.7) BS01 dna 2.3.2.27 GO:0000151 ... Q8IYW5 38242129
    819393 8txy:A (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    819394 8txy:B (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    819395 8txz:A (3.05) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    819396 8txz:A (3.05) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    819397 8tyj:A (1.9) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    819398 8tyj:B (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    819399 8tyj:B (1.9) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    819400 8tym:B (3.58) BS01 GDP 3.6.5.5 N/A Q05193 38663399
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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