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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    818401 8tj5:F (6.6) BS01 peptide ? GO:0000055 ... Q02199 37738963
    818402 8tj5:K (6.6) BS01 peptide ? GO:0005515 ... P48837 37738963
    818403 8tj5:K (6.6) BS02 peptide ? GO:0005515 ... P48837 37738963
    818404 8tj5:K (6.6) BS03 peptide ? GO:0005515 ... P48837 37738963
    818405 8tj5:L (6.6) BS01 peptide ? GO:0000055 ... Q02199 37738963
    818406 8tj5:M (6.6) BS01 peptide ? GO:0005515 ... P47054 37738963
    818407 8tj5:N (6.6) BS01 peptide ? GO:0005634 ... P52593 37738963
    818408 8tj5:O (6.6) BS01 peptide ? GO:0005515 ... P47054 37738963
    818409 8tj5:P (6.6) BS01 peptide ? GO:0005634 ... P52593 37738963
    818410 8tj5:R (6.6) BS01 peptide ? GO:0000055 ... P34077 37738963
    818411 8tj5:T (6.6) BS01 peptide ? GO:0000055 ... P34077 37738963
    818412 8tj5:Y (6.6) BS01 peptide ? GO:0000972 ... P38181 37738963
    818413 8tj6:A (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    818414 8tj6:B (2.85) BS01 FUC ? GO:0019031 ... O11283 38307019
    818415 8tj6:C (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    818416 8tj6:E (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    818417 8tj6:G (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    818418 8tj7:A (2.85) BS01 SIA ? GO:0019031 ... H9XM74 38307019
    818419 8tj8:A (2.56) BS01 SIA ? GO:0019031 ... I6SI59 38307019
    818420 8tj9:A (1.9) BS01 SIA ? GO:0019031 ... A0A0Y0S9M3 38307019
    818421 8tja:A (2.05) BS01 SIA ? GO:0019031 ... A0A4P8J8E1 38307019
    818422 8tjb:A (2.45) BS01 SIA ? GO:0019031 ... A0A1W6AW68 38307019
    818423 8tjc:A (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818424 8tjc:A (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818425 8tjc:B (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818426 8tjc:B (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818427 8tjc:C (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818428 8tjc:C (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818429 8tjc:D (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818430 8tjc:D (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    818431 8tje:A (3.4) BS01 dna ? GO:0005198 ... A0AA49KFS3 N/A
    818432 8tje:A (3.4) BS02 dna ? GO:0005198 ... A0AA49KFS3 N/A
    818433 8tjg:A (1.45) BS01 ZN 4.2.99.18 GO:0000703 ... A0QT90 N/A
    818434 8tjj:A (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    818435 8tjj:B (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    818436 8tjj:C (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    818437 8tjj:D (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    818438 8tjk:A (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    818439 8tjk:B (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    818440 8tjl:A (2.7) BS01 HZ6 2.7.10.1 GO:0004672 ... P00533 38300264
    818441 8tk7:A (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    818442 8tk7:B (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    818443 8tk7:C (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    818444 8tk8:A (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818445 8tk8:A (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818446 8tk8:A (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818447 8tk8:B (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818448 8tk8:B (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818449 8tk8:B (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818450 8tk8:C (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818451 8tk8:C (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818452 8tk8:C (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818453 8tk8:D (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818454 8tk8:D (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818455 8tk8:D (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818456 8tkd:A (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818457 8tkd:A (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818458 8tkd:A (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818459 8tkd:B (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818460 8tkd:B (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818461 8tkd:B (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818462 8tkd:C (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818463 8tkd:C (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818464 8tkd:C (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818465 8tkd:D (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818466 8tkd:D (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818467 8tkd:D (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818468 8tke:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818469 8tke:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818470 8tke:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818471 8tke:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818472 8tke:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818473 8tke:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818474 8tke:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818475 8tke:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818476 8tke:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818477 8tke:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818478 8tke:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818479 8tke:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818480 8tkf:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818481 8tkf:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818482 8tkf:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    818483 8tkf:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    818484 8tkf:A (3.2) BS05 PT5 ? GO:0000822 ... Q14573 37898605
    818485 8tkf:A (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    818486 8tkf:B (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    818487 8tkf:B (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    818488 8tkf:B (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    818489 8tkf:B (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    818490 8tkf:B (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    818491 8tkf:B (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    818492 8tkf:C (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    818493 8tkf:C (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    818494 8tkf:C (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    818495 8tkf:C (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    818496 8tkf:C (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    818497 8tkf:C (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    818498 8tkf:D (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    818499 8tkf:D (3.2) BS02 PT5 ? GO:0000822 ... Q14573 37898605
    818500 8tkf:D (3.2) BS03 ZN ? GO:0000822 ... Q14573 37898605
    818501 8tkf:D (3.2) BS04 I3P ? GO:0000822 ... Q14573 37898605
    818502 8tkf:D (3.2) BS05 CA ? GO:0000822 ... Q14573 37898605
    818503 8tkf:D (3.2) BS06 ATP ? GO:0000822 ... Q14573 37898605
    818504 8tkg:A (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818505 8tkg:A (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818506 8tkg:A (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    818507 8tkg:A (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    818508 8tkg:A (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    818509 8tkg:B (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818510 8tkg:B (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818511 8tkg:B (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    818512 8tkg:B (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    818513 8tkg:B (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    818514 8tkg:C (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818515 8tkg:C (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818516 8tkg:C (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    818517 8tkg:C (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    818518 8tkg:C (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    818519 8tkg:D (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818520 8tkg:D (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818521 8tkg:D (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    818522 8tkg:D (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    818523 8tkg:D (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    818524 8tkh:A (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818525 8tkh:A (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818526 8tkh:A (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818527 8tkh:B (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818528 8tkh:B (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818529 8tkh:B (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818530 8tkh:C (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818531 8tkh:C (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818532 8tkh:C (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818533 8tkh:D (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818534 8tkh:D (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818535 8tkh:D (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818536 8tki:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818537 8tki:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818538 8tki:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818539 8tki:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818540 8tki:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818541 8tki:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818542 8tki:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818543 8tki:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818544 8tki:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818545 8tki:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818546 8tki:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818547 8tki:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    818548 8tkl:A (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    818549 8tkl:A (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    818550 8tkl:B (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    818551 8tkl:B (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    818552 8tkm:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    818553 8tkm:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    818554 8tkm:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    818555 8tkm:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    818556 8tkn:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    818557 8tkn:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    818558 8tkn:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    818559 8tkn:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    818560 8tkp:B (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    818561 8tkp:B (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    818562 8tkp:D (2.9) BS01 CLR ? GO:0005886 ... Q11069 38354260
    818563 8tkp:E (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    818564 8tkp:E (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    818565 8tl0:A (3.1) BS01 rna ? N/A D0LTI2 38301007
    818566 8tl0:A (3.1) BS02 rna ? N/A D0LTI2 38301007
    818567 8tl0:B (3.1) BS01 rna ? N/A D0LTI2 38301007
    818568 8tl0:B (3.1) BS02 rna ? N/A D0LTI2 38301007
    818569 8tl0:C (3.1) BS01 rna ? N/A D0LTI2 38301007
    818570 8tl0:C (3.1) BS02 rna ? N/A D0LTI2 38301007
    818571 8tl0:D (3.1) BS01 rna ? N/A D0LTI2 38301007
    818572 8tl0:D (3.1) BS02 rna ? N/A D0LTI2 38301007
    818573 8tl0:I (3.1) BS01 rna ? N/A D0LTI2 38301007
    818574 8tl0:I (3.1) BS02 rna ? N/A D0LTI2 38301007
    818575 8tl0:K (3.1) BS01 rna ? N/A D0LTI2 38301007
    818576 8tl0:L (3.1) BS01 rna ? N/A D0LTI2 38301007
    818577 8tl1:A (3.16) BS01 GCH ? GO:0001172 ... P03526 38503747
    818578 8tl6:A (2.63) BS01 peptide ? GO:0003676 ... Q16531 38538798
    818579 8tl6:B (2.63) BS01 peptide ? GO:0005515 ... Q96JK2 38538798
    818580 8tl8:A (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    818581 8tl8:A (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    818582 8tl8:B (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    818583 8tl8:B (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    818584 8tl9:A (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818585 8tl9:A (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818586 8tl9:A (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    818587 8tl9:A (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    818588 8tl9:B (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818589 8tl9:B (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818590 8tl9:B (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    818591 8tl9:B (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    818592 8tl9:C (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818593 8tl9:C (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818594 8tl9:C (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    818595 8tl9:C (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    818596 8tl9:D (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    818597 8tl9:D (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    818598 8tl9:D (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    818599 8tl9:D (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    818600 8tla:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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