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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    817201 8t8c:17 (2.6) BS01 rna ? GO:0003735 ... P80340 37433044
    817202 8t8c:17 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    817203 8t8c:17 (2.6) BS03 MG ? GO:0003735 ... P80340 37433044
    817204 8t8c:17 (2.6) BS04 MG ? GO:0003735 ... P80340 37433044
    817205 8t8c:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    817206 8t8c:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    817207 8t8c:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    817208 8t8c:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    817209 8t8c:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    817210 8t8c:1D (2.6) BS01 rna ? GO:0002181 ... P60405 37433044
    817211 8t8c:1D (2.6) BS02 rna ? GO:0002181 ... P60405 37433044
    817212 8t8c:1D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    817213 8t8c:1D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    817214 8t8c:1D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    817215 8t8c:1D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    817216 8t8c:1D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    817217 8t8c:1D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    817218 8t8c:1D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    817219 8t8c:1D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    817220 8t8c:1D (2.6) BS11 MG ? GO:0002181 ... P60405 37433044
    817221 8t8c:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    817222 8t8c:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    817223 8t8c:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    817224 8t8c:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    817225 8t8c:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    817226 8t8c:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    817227 8t8c:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    817228 8t8c:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    817229 8t8c:1F (2.6) BS04 ARG ? GO:0003735 ... Q5SHN9 37433044
    817230 8t8c:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    817231 8t8c:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    817232 8t8c:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    817233 8t8c:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    817234 8t8c:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    817235 8t8c:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    817236 8t8c:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    817237 8t8c:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 37433044
    817238 8t8c:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 37433044
    817239 8t8c:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    817240 8t8c:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    817241 8t8c:1G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    817242 8t8c:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 37433044
    817243 8t8c:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    817244 8t8c:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    817245 8t8c:1N (2.6) BS01 rna ? GO:0003729 ... P60488 37433044
    817246 8t8c:1N (2.6) BS02 MG ? GO:0003729 ... P60488 37433044
    817247 8t8c:1N (2.6) BS03 MG ? GO:0003729 ... P60488 37433044
    817248 8t8c:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    817249 8t8c:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    817250 8t8c:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 37433044
    817251 8t8c:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    817252 8t8c:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    817253 8t8c:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 37433044
    817254 8t8c:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    817255 8t8c:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    817256 8t8c:1Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    817257 8t8c:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 37433044
    817258 8t8c:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 37433044
    817259 8t8c:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 37433044
    817260 8t8c:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 37433044
    817261 8t8c:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    817262 8t8c:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    817263 8t8c:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    817264 8t8c:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    817265 8t8c:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    817266 8t8c:1T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    817267 8t8c:1T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    817268 8t8c:1U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    817269 8t8c:1U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    817270 8t8c:1U (2.6) BS03 MG ? GO:0000027 ... P60491 37433044
    817271 8t8c:1U (2.6) BS04 MG ? GO:0000027 ... P60491 37433044
    817272 8t8c:1U (2.6) BS05 MG ? GO:0000027 ... P60491 37433044
    817273 8t8c:1U (2.6) BS06 MG ? GO:0000027 ... P60491 37433044
    817274 8t8c:1U (2.6) BS07 MG ? GO:0000027 ... P60491 37433044
    817275 8t8c:1V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    817276 8t8c:1V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    817277 8t8c:1V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    817278 8t8c:1V (2.6) BS04 MG ? GO:0003723 ... P60492 37433044
    817279 8t8c:1V (2.6) BS05 MG ? GO:0003723 ... P60492 37433044
    817280 8t8c:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    817281 8t8c:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    817282 8t8c:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    817283 8t8c:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    817284 8t8c:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    817285 8t8c:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    817286 8t8c:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    817287 8t8c:1b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    817288 8t8c:1b (2.6) BS02 MG ? GO:0003735 ... P80371 37433044
    817289 8t8c:1c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    817290 8t8c:1d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    817291 8t8c:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    817292 8t8c:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    817293 8t8c:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    817294 8t8c:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    817295 8t8c:1g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    817296 8t8c:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    817297 8t8c:1i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    817298 8t8c:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    817299 8t8c:1k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    817300 8t8c:1k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    817301 8t8c:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    817302 8t8c:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    817303 8t8c:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 37433044
    817304 8t8c:1m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    817305 8t8c:1m (2.6) BS02 MG ? GO:0000049 ... P80377 37433044
    817306 8t8c:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    817307 8t8c:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    817308 8t8c:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    817309 8t8c:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    817310 8t8c:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    817311 8t8c:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    817312 8t8c:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    817313 8t8c:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    817314 8t8c:1t (2.6) BS01 rna ? GO:0003723 ... P80380 37433044
    817315 8t8c:1t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    817316 8t8c:1y (2.6) BS01 rna ? GO:0005515 ... P0AD49 37433044
    817317 8t8c:1y (2.6) BS02 MG ? GO:0005515 ... P0AD49 37433044
    817318 8t8c:20 (2.6) BS01 rna ? GO:0003735 ... P60493 37433044
    817319 8t8c:20 (2.6) BS02 rna ? GO:0003735 ... P60493 37433044
    817320 8t8c:20 (2.6) BS03 MG ? GO:0003735 ... P60493 37433044
    817321 8t8c:21 (2.6) BS01 rna ? GO:0003735 ... P60494 37433044
    817322 8t8c:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    817323 8t8c:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    817324 8t8c:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    817325 8t8c:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    817326 8t8c:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    817327 8t8c:25 (2.6) BS01 rna ? GO:0003735 ... P80339 37433044
    817328 8t8c:25 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    817329 8t8c:25 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    817330 8t8c:25 (2.6) BS04 ZN ? GO:0003735 ... P80339 37433044
    817331 8t8c:26 (2.6) BS01 rna ? GO:0000049 ... P35871 37433044
    817332 8t8c:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    817333 8t8c:27 (2.6) BS01 rna ? GO:0003735 ... P80340 37433044
    817334 8t8c:27 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    817335 8t8c:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    817336 8t8c:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    817337 8t8c:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    817338 8t8c:2D (2.6) BS01 rna ? GO:0002181 ... P60405 37433044
    817339 8t8c:2D (2.6) BS02 rna ? GO:0002181 ... P60405 37433044
    817340 8t8c:2D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    817341 8t8c:2D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    817342 8t8c:2D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    817343 8t8c:2D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    817344 8t8c:2D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    817345 8t8c:2D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    817346 8t8c:2D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    817347 8t8c:2D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    817348 8t8c:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    817349 8t8c:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    817350 8t8c:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    817351 8t8c:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    817352 8t8c:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    817353 8t8c:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    817354 8t8c:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    817355 8t8c:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    817356 8t8c:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    817357 8t8c:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    817358 8t8c:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    817359 8t8c:2I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 37433044
    817360 8t8c:2N (2.6) BS01 rna ? GO:0003729 ... P60488 37433044
    817361 8t8c:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    817362 8t8c:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    817363 8t8c:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    817364 8t8c:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    817365 8t8c:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    817366 8t8c:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    817367 8t8c:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    817368 8t8c:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    817369 8t8c:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    817370 8t8c:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    817371 8t8c:2T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    817372 8t8c:2T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    817373 8t8c:2U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    817374 8t8c:2U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    817375 8t8c:2V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    817376 8t8c:2V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    817377 8t8c:2V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    817378 8t8c:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    817379 8t8c:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    817380 8t8c:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    817381 8t8c:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    817382 8t8c:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    817383 8t8c:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    817384 8t8c:2b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    817385 8t8c:2c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    817386 8t8c:2d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    817387 8t8c:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    817388 8t8c:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    817389 8t8c:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    817390 8t8c:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 37433044
    817391 8t8c:2g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    817392 8t8c:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    817393 8t8c:2i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    817394 8t8c:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    817395 8t8c:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 37433044
    817396 8t8c:2k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    817397 8t8c:2k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    817398 8t8c:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    817399 8t8c:2m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    817400 8t8c:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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