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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816801 8t6b:A (3.72) BS01 SRO ? GO:0001975 ... Q05940 37914936
    816802 8t6d:A (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    816803 8t6d:B (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    816804 8t6g:A (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    816805 8t6g:B (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    816806 8t6j:A (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    816807 8t6j:B (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    816808 8t6l:A (3.3) BS01 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    816809 8t6l:A (3.3) BS02 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    816810 8t6l:A (3.3) BS03 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    816811 8t6l:A (3.3) BS04 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    816812 8t6l:A (3.3) BS05 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    816813 8t6l:A (3.3) BS06 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    816814 8t6l:A (3.3) BS07 LBN ? GO:0001518 ... P15389
    P42212    		 38485923
    816815 8t6l:A (3.3) BS08 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816816 8t6l:A (3.3) BS09 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816817 8t6l:A (3.3) BS10 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816818 8t6l:A (3.3) BS11 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816819 8t6l:A (3.3) BS12 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816820 8t6l:A (3.3) BS13 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816821 8t6l:A (3.3) BS14 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816822 8t6l:A (3.3) BS15 Y01 ? GO:0001518 ... P15389
    P42212    		 38485923
    816823 8t6l:A (3.3) BS16 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    816824 8t6l:A (3.3) BS17 9Z9 ? GO:0001518 ... P15389
    P42212    		 38485923
    816825 8t6l:A (3.3) BS18 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    816826 8t6l:A (3.3) BS19 YIJ ? GO:0001518 ... P15389
    P42212    		 38485923
    816827 8t6o:A (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816828 8t6o:A (3.1) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816829 8t6o:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816830 8t6p:A (3.15) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816831 8t6p:A (3.15) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816832 8t6p:A (3.15) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816833 8t6s:A (3.28) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816834 8t6s:A (3.28) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816835 8t6s:A (3.28) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816836 8t6t:A (3.04) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816837 8t6t:A (3.04) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816838 8t6t:A (3.04) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816839 8t6u:A (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    816840 8t6u:A (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    816841 8t6u:A (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    816842 8t6u:B (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    816843 8t6u:B (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    816844 8t6u:B (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    816845 8t6v:A (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    816846 8t6v:A (2.95) BS02 Y01 ? GO:0005452 ... P02730 37679563
    816847 8t6v:A (2.95) BS03 CLR ? GO:0005452 ... P02730 37679563
    816848 8t6v:B (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    816849 8t6v:B (2.95) BS02 CLR ? GO:0005452 ... P02730 37679563
    816850 8t6x:A (3.08) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816851 8t6x:A (3.08) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816852 8t6x:A (3.08) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816853 8t6x:A (3.08) BS04 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816854 8t6x:A (3.08) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816855 8t6y:A (2.88) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816856 8t6y:A (2.88) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816857 8t6y:A (2.88) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816858 8t6z:A (1.91) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816859 8t6z:A (1.91) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816860 8t6z:A (1.91) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816861 8t70:A (1.892) BS01 peptide 2.5.1.58
    2.5.1.59    		 GO:0004659 ... J9VSJ6 N/A
    816862 8t70:B (1.892) BS01 peptide 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    816863 8t70:B (1.892) BS02 ZN 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    816864 8t70:B (1.892) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    816865 8t70:B (1.892) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    816866 8t70:B (1.892) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    816867 8t70:B (1.892) BS06 FII 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    816868 8t70:B (1.892) BS07 BT6 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    816869 8t71:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    816870 8t71:B (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    816871 8t72:A (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816872 8t72:A (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    816873 8t72:B (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816874 8t72:B (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    816875 8t72:C (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816876 8t73:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    816877 8t73:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    816878 8t74:A (1.65) BS01 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    816879 8t74:A (1.65) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816880 8t75:A (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816881 8t75:A (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    816882 8t75:B (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816883 8t75:B (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816884 8t75:C (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816885 8t75:C (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    816886 8t75:D (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816887 8t75:D (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816888 8t75:E (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816889 8t75:E (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    816890 8t75:F (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816891 8t75:F (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816892 8t75:G (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    816893 8t75:G (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    816894 8t75:H (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816895 8t75:H (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    816896 8t76:A (3.42) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816897 8t76:A (3.42) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816898 8t76:A (3.42) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816899 8t77:A (3.25) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816900 8t77:A (3.25) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816901 8t77:A (3.25) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816902 8t78:A (3.02) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816903 8t78:A (3.02) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816904 8t78:A (3.02) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816905 8t79:A (3.04) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816906 8t79:A (3.04) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816907 8t79:A (3.04) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816908 8t7e:A (3.08) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38151585
    816909 8t7e:A (3.08) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38151585
    816910 8t7h:A (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    816911 8t7h:B (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    816912 8t7j:A (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    816913 8t7j:B (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    816914 8t7j:C (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    816915 8t7j:D (2.4) BS01 PO4 1.-.-.- GO:0004125 ... E1CG36 37556254
    816916 8t7q:A (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    816917 8t7q:B (2.1) BS01 ZH5 3.1.3.48 GO:0004725 ... Q06124 37774359
    816918 8t7s:A (3.01) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816919 8t7s:A (3.01) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816920 8t7s:A (3.01) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816921 8t7s:A (3.01) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816922 8t7s:A (3.01) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816923 8t7s:A (3.01) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816924 8t7s:A (3.01) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816925 8t7s:G (3.01) BS01 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816926 8t7s:G (3.01) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816927 8t7s:G (3.01) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    816928 8t7u:A (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816929 8t7u:B (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816930 8t7u:C (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816931 8t7u:D (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816932 8t7u:E (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816933 8t7u:F (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816934 8t7u:G (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816935 8t7v:A (2.25) BS01 ZTA ? GO:0005856 ... O00522 37974623
    816936 8t7v:B (2.25) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    816937 8t7v:B (2.25) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    816938 8t81:A (2.6) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816939 8t81:A (2.6) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816940 8t81:A (2.6) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    816941 8t85:A (2.38) BS01 MG ? GO:0000156 ... P0AEV1 37949227
    816942 8t85:A (2.38) BS02 BEF ? GO:0000156 ... P0AEV1 37949227
    816943 8t88:A (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    816944 8t88:A (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    816945 8t88:B (1.54) BS01 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    816946 8t88:B (1.54) BS02 YW0 3.-.-.- GO:0016787 ... Q2FDS6 38411555
    816947 8t8b:10 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    816948 8t8b:10 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    816949 8t8b:10 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    816950 8t8b:10 (2.65) BS04 MG ? GO:0003735 ... P60493 37433044
    816951 8t8b:10 (2.65) BS05 MG ? GO:0003735 ... P60493 37433044
    816952 8t8b:10 (2.65) BS06 MG ? GO:0003735 ... P60493 37433044
    816953 8t8b:11 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    816954 8t8b:11 (2.65) BS02 MG ? GO:0003735 ... P60494 37433044
    816955 8t8b:12 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    816956 8t8b:13 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    816957 8t8b:13 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    816958 8t8b:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    816959 8t8b:13 (2.65) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    816960 8t8b:14 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    816961 8t8b:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    816962 8t8b:15 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    816963 8t8b:15 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    816964 8t8b:15 (2.65) BS03 MG ? GO:0003735 ... P80339 37433044
    816965 8t8b:15 (2.65) BS04 MG ? GO:0003735 ... P80339 37433044
    816966 8t8b:15 (2.65) BS05 MG ? GO:0003735 ... P80339 37433044
    816967 8t8b:15 (2.65) BS06 ZN ? GO:0003735 ... P80339 37433044
    816968 8t8b:16 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    816969 8t8b:16 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    816970 8t8b:17 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    816971 8t8b:17 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    816972 8t8b:17 (2.65) BS03 MG ? GO:0003735 ... P80340 37433044
    816973 8t8b:18 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    816974 8t8b:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    816975 8t8b:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    816976 8t8b:18 (2.65) BS04 MG ? GO:0003735 ... Q5SKU1 37433044
    816977 8t8b:19 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    816978 8t8b:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    816979 8t8b:1D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    816980 8t8b:1D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    816981 8t8b:1D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    816982 8t8b:1D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044
    816983 8t8b:1D (2.65) BS05 MG ? GO:0002181 ... P60405 37433044
    816984 8t8b:1D (2.65) BS06 MG ? GO:0002181 ... P60405 37433044
    816985 8t8b:1D (2.65) BS07 MG ? GO:0002181 ... P60405 37433044
    816986 8t8b:1D (2.65) BS08 MG ? GO:0002181 ... P60405 37433044
    816987 8t8b:1D (2.65) BS09 MG ? GO:0002181 ... P60405 37433044
    816988 8t8b:1D (2.65) BS10 MG ? GO:0002181 ... P60405 37433044
    816989 8t8b:1D (2.65) BS11 MG ? GO:0002181 ... P60405 37433044
    816990 8t8b:1D (2.65) BS12 MG ? GO:0002181 ... P60405 37433044
    816991 8t8b:1E (2.65) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    816992 8t8b:1E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    816993 8t8b:1E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    816994 8t8b:1E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    816995 8t8b:1E (2.65) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    816996 8t8b:1F (2.65) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    816997 8t8b:1F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    816998 8t8b:1F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    816999 8t8b:1F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    817000 8t8b:1F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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