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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816401 8t14:E (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816402 8t14:F (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816403 8t14:G (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    816404 8t19:A (1.23) BS01 peptide ? N/A U5Q0A7 N/A
    816405 8t19:A (1.23) BS02 MG ? N/A U5Q0A7 N/A
    816406 8t1b:A (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816407 8t1b:A (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816408 8t1b:A (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816409 8t1b:A (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816410 8t1b:A (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816411 8t1b:A (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816412 8t1b:A (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816413 8t1b:A (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816414 8t1b:A (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816415 8t1b:A (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816416 8t1b:A (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816417 8t1b:B (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816418 8t1b:B (3.0) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816419 8t1b:B (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816420 8t1b:B (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816421 8t1b:B (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816422 8t1b:B (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816423 8t1b:B (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816424 8t1b:B (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816425 8t1b:B (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816426 8t1b:B (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816427 8t1b:B (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816428 8t1b:B (3.0) BS12 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816429 8t1b:C (3.0) BS01 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816430 8t1b:C (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816431 8t1b:C (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816432 8t1b:C (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816433 8t1b:C (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816434 8t1b:C (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816435 8t1b:C (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816436 8t1b:C (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816437 8t1b:C (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816438 8t1b:C (3.0) BS10 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816439 8t1b:C (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816440 8t1b:D (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816441 8t1b:D (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816442 8t1b:D (3.0) BS03 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816443 8t1b:D (3.0) BS04 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816444 8t1b:D (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816445 8t1b:D (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816446 8t1b:D (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816447 8t1b:D (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816448 8t1b:D (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816449 8t1b:D (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816450 8t1b:D (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816451 8t1c:E (3.49) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 37353478
    816452 8t1d:A (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    816453 8t1d:B (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    816454 8t1d:C (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    816455 8t1d:D (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    816456 8t1e:A (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816457 8t1e:A (2.77) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816458 8t1e:A (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816459 8t1e:A (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816460 8t1e:A (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816461 8t1e:A (2.77) BS06 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816462 8t1e:A (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816463 8t1e:A (2.77) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816464 8t1e:B (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816465 8t1e:B (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816466 8t1e:B (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816467 8t1e:B (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816468 8t1e:B (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816469 8t1e:B (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816470 8t1e:B (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816471 8t1e:B (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816472 8t1e:B (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816473 8t1e:C (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816474 8t1e:C (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816475 8t1e:C (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816476 8t1e:C (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816477 8t1e:C (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816478 8t1e:C (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816479 8t1e:C (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816480 8t1e:C (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816481 8t1e:C (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816482 8t1e:D (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816483 8t1e:D (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816484 8t1e:D (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816485 8t1e:D (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816486 8t1e:D (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816487 8t1e:D (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816488 8t1e:D (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816489 8t1e:D (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    816490 8t1e:D (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    816491 8t1f:A (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    816492 8t1f:B (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    816493 8t1f:C (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    816494 8t1f:D (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    816495 8t1j:A (2.7) BS01 ZN 1.14.13.39 GO:0001666 ... P29476 37979917
    816496 8t1j:A (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    816497 8t1j:A (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    816498 8t1j:A (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    816499 8t1j:B (2.7) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    816500 8t1j:B (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    816501 8t1j:B (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    816502 8t1j:B (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    816503 8t1k:A (3.14) BS01 ZN 1.14.13.39 GO:0001666 ... P29476 37979917
    816504 8t1k:A (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    816505 8t1k:A (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    816506 8t1k:A (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    816507 8t1k:A (3.14) BS05 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    816508 8t1k:B (3.14) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    816509 8t1k:B (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    816510 8t1k:B (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    816511 8t1k:B (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    816512 8t1o:A (3.3) BS01 PIO ? GO:0005794 ... P17427 37364761
    816513 8t1o:M (3.3) BS01 peptide ? GO:0002092 ... P84091 37364761
    816514 8t1p:C (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    816515 8t1p:C (2.96) BS02 MG 7.6.2.- GO:0005524 ... O07550 37938578
    816516 8t1p:C (2.96) BS03 AOV 7.6.2.- GO:0005524 ... O07550 37938578
    816517 8t1p:D (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    816518 8t1p:D (2.96) BS02 AOV 7.6.2.- GO:0005524 ... O07549 37938578
    816519 8t1p:D (2.96) BS03 MG 7.6.2.- GO:0005524 ... O07549 37938578
    816520 8t1q:A (1.7) BS01 XYX 3.1.27.- N/A Q9UKF6 37967558
    816521 8t1q:A (1.7) BS02 FE 3.1.27.- N/A Q9UKF6 37967558
    816522 8t1q:A (1.7) BS03 FE 3.1.27.- N/A Q9UKF6 37967558
    816523 8t1r:A (2.2) BS01 XZC 3.1.27.- N/A Q9UKF6 37967558
    816524 8t1r:A (2.2) BS02 FE 3.1.27.- N/A Q9UKF6 37967558
    816525 8t1r:A (2.2) BS03 FE 3.1.27.- N/A Q9UKF6 37967558
    816526 8t1s:A (2.0) BS01 SAH ? GO:0008168 ... Q8EGW3 37799586
    816527 8t1s:A (2.0) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    816528 8t1s:C (2.0) BS01 ZN ? GO:0008168 ... Q8EGW3 37799586
    816529 8t1s:C (2.0) BS02 SAH ? GO:0008168 ... Q8EGW3 37799586
    816530 8t1t:A (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    816531 8t1t:A (1.55) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    816532 8t1t:C (1.55) BS01 SAM ? GO:0008168 ... Q8EGW3 37799586
    816533 8t1t:C (1.55) BS02 ZN ? GO:0008168 ... Q8EGW3 37799586
    816534 8t1u:A (2.91) BS01 dna 2.1.1.37 GO:0008168 ... Q9M548 37926286
    816535 8t1u:A (2.91) BS02 dna 2.1.1.37 GO:0008168 ... Q9M548 37926286
    816536 8t1u:A (2.91) BS03 SAH 2.1.1.37 GO:0008168 ... Q9M548 37926286
    816537 8t1y:A (2.14) BS01 DAN 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816538 8t1z:A (1.93) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816539 8t24:A (2.29) BS01 FUD 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816540 8t26:A (1.42) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816541 8t27:A (1.41) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816542 8t27:A (1.41) BS02 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816543 8t27:A (1.41) BS03 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816544 8t27:A (1.41) BS04 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    816545 8t2h:A (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    816546 8t2h:B (1.85) BS01 XIR 2.7.11.23
    2.7.12.1    		 GO:0004672 ... Q13627 N/A
    816547 8t2j:A (1.8) BS01 MG 3.1.3.16 N/A O15297 39002674
    816548 8t2j:A (1.8) BS02 MG 3.1.3.16 N/A O15297 39002674
    816549 8t2n:A (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    816550 8t2n:C (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    816551 8t2r:D (3.1) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    816552 8t2r:D (3.1) BS02 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    816553 8t2s:D (3.0) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    816554 8t2t:D (3.0) BS01 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    816555 8t2t:D (3.0) BS02 rna 2.7.7.49 GO:0003964 ... A0A173ZME3 37993708
    816556 8t2u:A (3.1) BS01 peptide ? GO:0001525 ... P08514 37443315
    816557 8t2u:A (3.1) BS02 CA ? GO:0001525 ... P08514 37443315
    816558 8t2u:A (3.1) BS03 CA ? GO:0001525 ... P08514 37443315
    816559 8t2u:A (3.1) BS04 CA ? GO:0001525 ... P08514 37443315
    816560 8t2u:A (3.1) BS05 CA ? GO:0001525 ... P08514 37443315
    816561 8t2u:B (3.1) BS01 peptide ? GO:0001618 ... P05106 37443315
    816562 8t2u:B (3.1) BS02 MG ? GO:0001618 ... P05106 37443315
    816563 8t2u:B (3.1) BS03 CA ? GO:0001618 ... P05106 37443315
    816564 8t2u:B (3.1) BS04 CA ? GO:0001618 ... P05106 37443315
    816565 8t2v:A (3.4) BS01 CA ? GO:0001525 ... P08514 37443315
    816566 8t2v:A (3.4) BS02 CA ? GO:0001525 ... P08514 37443315
    816567 8t2v:A (3.4) BS03 CA ? GO:0001525 ... P08514 37443315
    816568 8t2v:A (3.4) BS04 CA ? GO:0001525 ... P08514 37443315
    816569 8t2v:A (3.4) BS05 CA ? GO:0001525 ... P08514 37443315
    816570 8t2v:B (3.4) BS01 MG ? GO:0001618 ... P05106 37443315
    816571 8t2v:B (3.4) BS02 CA ? GO:0001618 ... P05106 37443315
    816572 8t2v:B (3.4) BS03 CA ? GO:0001618 ... P05106 37443315
    816573 8t31:A (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    816574 8t31:C (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    816575 8t31:E (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    816576 8t31:G (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    816577 8t31:I (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    816578 8t32:A (2.051) BS01 peptide ? GO:0000045 ... O95166 38726830
    816579 8t33:A (1.599) BS01 peptide ? GO:0000045 ... O95166 38726830
    816580 8t33:A (1.599) BS02 ZN ? GO:0000045 ... O95166 38726830
    816581 8t3k:C (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    816582 8t3k:D (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    816583 8t3l:A (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    816584 8t3l:B (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    816585 8t3l:C (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    816586 8t3l:D (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    816587 8t3m:A (3.5) BS01 85R ? GO:0005216 ... O35433 38698206
    816588 8t3m:B (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    816589 8t3m:C (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    816590 8t3m:C (3.5) BS02 NKN ? GO:0005216 ... O35433 38698206
    816591 8t3m:D (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    816592 8t3o:R (3.06) BS01 YN9 ? GO:0004930 ... Q5NUL3 38198545
    816593 8t3o:R (3.06) BS02 2Y5 ? GO:0004930 ... Q5NUL3 38198545
    816594 8t3p:A (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    816595 8t3p:B (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    816596 8t3q:R (3.14) BS01 HXA ? GO:0004930 ... Q5NUL3 38198545
    816597 8t3r:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    816598 8t3r:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    816599 8t3r:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    816600 8t3s:R (3.07) BS01 BUA ? GO:0004930 ... O15552 38198545
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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