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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814601 8snb:UK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814602 8snb:UK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814603 8snb:UL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814604 8snb:UM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814605 8snb:VA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814606 8snb:VB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814607 8snb:VB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814608 8snb:VC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814609 8snb:VD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814610 8snb:VE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814611 8snb:VE (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814612 8snb:VF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814613 8snb:VF (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814614 8snb:VG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814615 8snb:VH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814616 8snb:VI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814617 8snb:VI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814618 8snb:VJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814619 8snb:VK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814620 8snb:VL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814621 8snb:VM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814622 8snb:WA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814623 8snb:WB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814624 8snb:WB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814625 8snb:WC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814626 8snb:WD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814627 8snb:WD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814628 8snb:WE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814629 8snb:WF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814630 8snb:WG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814631 8snb:WH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814632 8snb:WI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814633 8snb:WI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814634 8snb:WJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814635 8snb:WJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814636 8snb:WK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814637 8snb:WL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814638 8snc:A (3.2) BS01 BDP ? GO:0016020 ... M1H2Q1 N/A
    814639 8snc:A (3.2) BS02 Y01 ? GO:0016020 ... M1H2Q1 N/A
    814640 8snc:A (3.2) BS03 MN ? GO:0016020 ... M1H2Q1 N/A
    814641 8snc:A (3.2) BS04 MN ? GO:0016020 ... M1H2Q1 N/A
    814642 8snd:A (3.1) BS01 UGA ? GO:0016020 ... M1H2Q1 N/A
    814643 8snd:A (3.1) BS02 Y01 ? GO:0016020 ... M1H2Q1 N/A
    814644 8sne:A (3.0) BS01 BDP ? GO:0016020 ... M1H2Q1 N/A
    814645 8sne:A (3.0) BS02 UDP ? GO:0016020 ... M1H2Q1 N/A
    814646 8sne:A (3.0) BS03 Y01 ? GO:0016020 ... M1H2Q1 N/A
    814647 8sne:A (3.0) BS04 MN ? GO:0016020 ... M1H2Q1 N/A
    814648 8sng:A (1.55) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814649 8sng:A (1.55) BS02 MG 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814650 8sng:B (1.55) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814651 8sng:B (1.55) BS02 MG 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814652 8snh:C (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    814653 8snh:D (2.7) BS01 I7Y ? GO:0005886 ... Q9HVY5 37751552
    814654 8snh:D (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    814655 8snh:D (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    814656 8snh:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    814657 8snh:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    814658 8snh:E (2.7) BS02 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    814659 8snh:E (2.7) BS03 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    814660 8snh:E (2.7) BS04 HEC 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    814661 8snh:F (2.7) BS01 CA ? GO:0004129 ... Q9I3G4 37751552
    814662 8snh:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    814663 8snh:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G2 37751552
    814664 8snh:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G2 37751552
    814665 8snh:I (2.7) BS01 I7Y ? GO:0005886 ... Q9HVY5 37751552
    814666 8snh:I (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    814667 8snh:I (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    814668 8snh:I (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    814669 8snh:J (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    814670 8snh:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    814671 8snh:K (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    814672 8snh:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    814673 8snh:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    814674 8snh:M (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    814675 8snh:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    814676 8snh:N (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    814677 8snh:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    814678 8snh:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    814679 8snh:Z (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    814680 8snh:Z (2.7) BS02 I7Y 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    814681 8snh:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    814682 8snj:A (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814683 8snj:B (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814684 8snj:C (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814685 8snj:D (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814686 8snj:E (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814687 8snj:F (1.75) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    814688 8snl:A (2.78) BS01 ZN 3.4.24.86 N/A P78536 N/A
    814689 8snl:A (2.78) BS02 CA 3.4.24.86 N/A P78536 N/A
    814690 8snm:B (3.84) BS01 ZN 3.4.24.86 N/A P78536 N/A
    814691 8snm:B (3.84) BS02 CA 3.4.24.86 N/A P78536 N/A
    814692 8snn:A (2.32) BS01 CA 3.4.24.86 N/A P78536 N/A
    814693 8sno:A (2.78) BS01 CA 3.4.24.86 N/A P78536 N/A
    814694 8snx:A (3.4) BS01 rna 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... P28887 38123676
    814695 8sny:A (3.41) BS01 rna 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... P28887 38123676
    814696 8snz:A (2.17) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    814697 8snz:B (2.17) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    814698 8so0:C (2.79961) BS01 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    814699 8so0:C (2.79961) BS02 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    814700 8so1:A (2.05) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814701 8so1:A (2.05) BS02 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814702 8so1:A (2.05) BS03 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814703 8so2:A (2.15) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814704 8so2:A (2.15) BS02 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814705 8so2:A (2.15) BS03 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814706 8so2:A (2.15) BS04 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814707 8so2:A (2.15) BS05 CFF 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37524132
    814708 8soa:A (3.32) BS01 ATP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0001525 ... O02697 38565696
    814709 8sob:A (3.9) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0001525 ... O02697 38565696
    814710 8soc:A (3.5) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0001525 ... O02697 38565696
    814711 8sod:A (3.4) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0001525 ... O02697 38565696
    814712 8soe:A (3.6) BS01 ADP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0001525 ... O02697 38565696
    814713 8sog:A (1.13) BS01 CA 3.4.21.64 GO:0004252 ... P06873 37748828
    814714 8soj:A (3.8) BS01 ZN ? GO:0000723 ... P0AEX9
    Q2NKJ3
    37215005
    814715 8soj:D (3.8) BS01 ZN ? GO:0000723 ... Q9NUX5 37215005
    814716 8sok:A (4.1) BS01 ZN ? GO:0000723 ... P0AEX9
    Q2NKJ3
    37215005
    814717 8sok:D (4.1) BS01 dna ? GO:0000723 ... Q9NUX5 37215005
    814718 8sok:D (4.1) BS02 ZN ? GO:0000723 ... Q9NUX5 37215005
    814719 8son:A (1.63) BS01 30Y 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 N/A
    814720 8son:B (1.63) BS01 30Y 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 N/A
    814721 8soq:A (3.1) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    814722 8soq:A (3.1) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    814723 8soq:B (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    814724 8soq:C (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    814725 8soq:D (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    814726 8soq:E (3.1) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    814727 8sor:A (3.96) BS01 ADP 2.7.11.1 GO:0004672 ... Q99570 N/A
    814728 8sos:A (2.33) BS01 FO4 ? GO:0003677 ... P05412
    P15813
    38040419
    814729 8sos:E (2.33) BS01 FO4 ? GO:0003677 ... P05412
    P15813
    38040419
    814730 8sou:A (1.54) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 37748828
    814731 8sou:A (1.54) BS02 CA 3.4.21.64 GO:0004252 ... P06873 37748828
    814732 8sov:A (1.291) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 37748828
    814733 8sov:A (1.291) BS02 CA 3.4.21.64 GO:0004252 ... P06873 37748828
    814734 8sp0:A (3.33) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    814735 8sp0:A (3.33) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    814736 8sp0:B (3.33) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    814737 8sp0:B (3.33) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    814738 8sp0:E (3.33) BS01 dna ? GO:0007165 ... A0A316E683 37494956
    814739 8sp0:E (3.33) BS02 rna ? GO:0007165 ... A0A316E683 37494956
    814740 8sp0:F (3.33) BS01 dna ? GO:0003676 ... A0A316E3U6 37494956
    814741 8sp0:F (3.33) BS02 rna ? GO:0003676 ... A0A316E3U6 37494956
    814742 8sp1:F (1.62) BS01 dna ? GO:0003700 ... P17433 38042148
    814743 8sp1:F (1.62) BS02 dna ? GO:0003700 ... P17433 38042148
    814744 8sp3:A (3.52) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    814745 8sp3:A (3.52) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    814746 8sp3:B (3.52) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    814747 8sp3:B (3.52) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    814748 8sp3:B (3.52) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    814749 8sp3:E (3.52) BS01 rna ? GO:0007165 ... A0A316E683 37494956
    814750 8sp3:E (3.52) BS02 dna ? GO:0007165 ... A0A316E683 37494956
    814751 8sp3:F (3.52) BS01 rna ? GO:0003676 ... A0A316E3U6 37494956
    814752 8sp3:F (3.52) BS02 dna ? GO:0003676 ... A0A316E3U6 37494956
    814753 8sp3:F (3.52) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    814754 8sp5:A (2.23) BS01 MN 2.7.7.49 N/A O00370 38719805
    814755 8sp5:B (2.23) BS01 MN 2.7.7.49 N/A O00370 38719805
    814756 8sp6:A (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    814757 8sp6:A (1.45) BS02 peptide ? N/A Q8N8U2 N/A
    814758 8sp6:B (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    814759 8sp6:C (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    814760 8sp6:C (1.45) BS02 peptide ? N/A Q8N8U2 N/A
    814761 8sp6:D (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    814762 8sp6:E (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    814763 8sp6:E (1.45) BS02 peptide ? N/A Q8N8U2 N/A
    814764 8sp6:F (1.45) BS01 peptide ? N/A Q8N8U2 N/A
    814765 8sp6:F (1.45) BS02 I9A ? N/A Q8N8U2 N/A
    814766 8sp7:A (1.83) BS01 AMH 2.7.7.49 N/A O00370 38719805
    814767 8sp8:A (2.79) BS01 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814768 8sp8:A (2.79) BS02 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814769 8sp8:A (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814770 8sp8:A (2.79) BS04 I8E ? GO:0005216 ... Q9H1D0 37532722
    814771 8sp8:A (2.79) BS05 I8E ? GO:0005216 ... Q9H1D0 37532722
    814772 8sp8:A (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    814773 8sp8:B (2.79) BS01 I8E ? GO:0005216 ... Q9H1D0 37532722
    814774 8sp8:B (2.79) BS02 I8E ? GO:0005216 ... Q9H1D0 37532722
    814775 8sp8:B (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814776 8sp8:B (2.79) BS04 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814777 8sp8:B (2.79) BS05 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814778 8sp8:B (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    814779 8sp8:C (2.79) BS01 I8E ? GO:0005216 ... Q9H1D0 37532722
    814780 8sp8:C (2.79) BS02 I8E ? GO:0005216 ... Q9H1D0 37532722
    814781 8sp8:C (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814782 8sp8:C (2.79) BS04 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814783 8sp8:C (2.79) BS05 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814784 8sp8:C (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    814785 8sp8:D (2.79) BS01 I8E ? GO:0005216 ... Q9H1D0 37532722
    814786 8sp8:D (2.79) BS02 I8E ? GO:0005216 ... Q9H1D0 37532722
    814787 8sp8:D (2.79) BS03 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814788 8sp8:D (2.79) BS04 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814789 8sp8:D (2.79) BS05 Y01 ? GO:0005216 ... Q9H1D0 37532722
    814790 8sp8:D (2.79) BS06 I8E ? GO:0005216 ... Q9H1D0 37532722
    814791 8spc:A (1.871) BS01 HEM ? GO:0004497 ... A0A224AU14 37555759
    814792 8spd:A (2.9) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37770228
    814793 8spd:A (2.9) BS02 CL6 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 37770228
    814794 8spe:C (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    814795 8spe:D (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    814796 8spe:J (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    814797 8spe:M (2.3) BS01 ZN ? GO:0042981 ... Q07812 38088212
    814798 8sph:A (2.71) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37578233
    814799 8sph:B (2.71) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37578233
    814800 8spi:A (3.06) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 37578233

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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