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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814201 8sn8:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814202 8sn8:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814203 8sn9:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    814204 8sn9:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    814205 8sn9:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    814206 8sn9:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    814207 8sn9:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    814208 8sn9:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    814209 8sn9:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    814210 8sn9:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    814211 8sn9:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    814212 8sn9:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    814213 8sn9:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    814214 8sn9:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    814215 8sn9:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    814216 8sn9:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    814217 8sn9:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    814218 8sn9:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    814219 8sn9:K (3.9) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814220 8sn9:K (3.9) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814221 8sna:A (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    814222 8sna:A (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    814223 8sna:B (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    814224 8sna:B (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    814225 8sna:C (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    814226 8sna:C (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    814227 8sna:D (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    814228 8sna:D (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    814229 8sna:E (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    814230 8sna:E (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    814231 8sna:F (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    814232 8sna:F (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    814233 8sna:G (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    814234 8sna:G (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    814235 8sna:H (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    814236 8sna:H (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    814237 8sna:K (4.0) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814238 8sna:K (4.0) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814239 8snb:1y (3.3) BS01 peptide ? GO:0005813 ... A0A7M7PGM9 37327785
    814240 8snb:2R (3.3) BS01 peptide ? GO:0005634 ... A0A7M7REB1 37327785
    814241 8snb:5F (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    814242 8snb:5G (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    814243 8snb:5H (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    814244 8snb:5J (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    814245 8snb:5N (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    814246 8snb:5N (3.3) BS02 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    814247 8snb:6M (3.3) BS01 peptide ? GO:0019902 ... A0A7M7P181 37327785
    814248 8snb:6R (3.3) BS01 peptide ? N/A A0A7M7THB5 37327785
    814249 8snb:6R (3.3) BS02 peptide ? N/A A0A7M7THB5 37327785
    814250 8snb:8F (3.3) BS01 peptide ? GO:0005929 ... Q9U0E3 37327785
    814251 8snb:8K (3.3) BS01 peptide ? GO:0005737 ... A0A7M7SXG5 37327785
    814252 8snb:8S (3.3) BS01 peptide ? GO:0005737 ... Q26623 37327785
    814253 8snb:AA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814254 8snb:AB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814255 8snb:AC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814256 8snb:AC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814257 8snb:AD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814258 8snb:AE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814259 8snb:AF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814260 8snb:AG (3.3) BS01 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814261 8snb:AG (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814262 8snb:AH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814263 8snb:AH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814264 8snb:AI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814265 8snb:AJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814266 8snb:AK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814267 8snb:AL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814268 8snb:AM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814269 8snb:BA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814270 8snb:BB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814271 8snb:BC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814272 8snb:BD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814273 8snb:BE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814274 8snb:BF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814275 8snb:BG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814276 8snb:BH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814277 8snb:BI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814278 8snb:BI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814279 8snb:BJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814280 8snb:BK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814281 8snb:BK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814282 8snb:BL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814283 8snb:BM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814284 8snb:CA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814285 8snb:CA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814286 8snb:CB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814287 8snb:CB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814288 8snb:CC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814289 8snb:CC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814290 8snb:CD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814291 8snb:CE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814292 8snb:CF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814293 8snb:CF (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814294 8snb:CG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814295 8snb:CH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814296 8snb:CI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814297 8snb:CI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814298 8snb:CJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814299 8snb:CK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814300 8snb:CL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814301 8snb:CM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814302 8snb:DA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814303 8snb:DB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814304 8snb:DB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814305 8snb:DC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814306 8snb:DD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814307 8snb:DD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814308 8snb:DE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814309 8snb:DF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814310 8snb:DG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814311 8snb:DH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814312 8snb:DH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814313 8snb:DI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814314 8snb:DJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814315 8snb:DJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814316 8snb:DK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814317 8snb:DL (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814318 8snb:DL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814319 8snb:DM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814320 8snb:EA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814321 8snb:EA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814322 8snb:EB (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814323 8snb:EB (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814324 8snb:EC (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814325 8snb:ED (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814326 8snb:EE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814327 8snb:EF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814328 8snb:EG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814329 8snb:EH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814330 8snb:EI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814331 8snb:EJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814332 8snb:EK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814333 8snb:EL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814334 8snb:EM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814335 8snb:FA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814336 8snb:FB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814337 8snb:FC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814338 8snb:FD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814339 8snb:FE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814340 8snb:FF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814341 8snb:FG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814342 8snb:FG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814343 8snb:FH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814344 8snb:FI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814345 8snb:FI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814346 8snb:FJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814347 8snb:FK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814348 8snb:FL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814349 8snb:FM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814350 8snb:GA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814351 8snb:GA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814352 8snb:GB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814353 8snb:GC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814354 8snb:GD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814355 8snb:GD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814356 8snb:GE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814357 8snb:GF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814358 8snb:GG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814359 8snb:GH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814360 8snb:GI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814361 8snb:GJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814362 8snb:GK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814363 8snb:GL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814364 8snb:GM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814365 8snb:HA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814366 8snb:HA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814367 8snb:HB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814368 8snb:HC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814369 8snb:HD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814370 8snb:HE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814371 8snb:HF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814372 8snb:HG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814373 8snb:HG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814374 8snb:HH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814375 8snb:HI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814376 8snb:HJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814377 8snb:HK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814378 8snb:HK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814379 8snb:HL (3.3) BS01 peptide ? GO:0003924 ... A0A7M7NS69 37327785
    814380 8snb:HL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814381 8snb:HM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814382 8snb:IA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814383 8snb:IB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814384 8snb:IC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814385 8snb:IC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814386 8snb:ID (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814387 8snb:IE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814388 8snb:IE (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814389 8snb:IF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814390 8snb:IG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814391 8snb:IH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814392 8snb:II (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814393 8snb:II (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    814394 8snb:IJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814395 8snb:IJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    814396 8snb:IK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814397 8snb:IL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    814398 8snb:IM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814399 8snb:JA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    814400 8snb:JB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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