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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814001 8smx:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    814002 8smx:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    814003 8smx:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    814004 8smx:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    814005 8smx:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    814006 8smx:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    814007 8smx:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814008 8smx:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814009 8smy:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    814010 8smy:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    814011 8smy:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    814012 8smy:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    814013 8smy:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    814014 8smy:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    814015 8smy:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    814016 8smy:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    814017 8smy:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    814018 8smy:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    814019 8smy:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    814020 8smy:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    814021 8smy:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    814022 8smy:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    814023 8smy:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    814024 8smy:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814025 8smy:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814026 8smz:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    814027 8smz:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    814028 8smz:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    814029 8smz:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    814030 8smz:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    814031 8smz:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    814032 8smz:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    814033 8smz:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    814034 8smz:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    814035 8smz:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    814036 8smz:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    814037 8smz:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    814038 8smz:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    814039 8smz:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    814040 8smz:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    814041 8smz:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814042 8smz:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814043 8sn0:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    814044 8sn0:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    814045 8sn0:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    814046 8sn0:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    814047 8sn0:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    814048 8sn0:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    814049 8sn0:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    814050 8sn0:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    814051 8sn0:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    814052 8sn0:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    814053 8sn0:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    814054 8sn0:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    814055 8sn0:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    814056 8sn0:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    814057 8sn0:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    814058 8sn0:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    814059 8sn0:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814060 8sn0:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814061 8sn1:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    814062 8sn1:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    814063 8sn1:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    814064 8sn1:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    814065 8sn1:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    814066 8sn1:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    814067 8sn1:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    814068 8sn1:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    814069 8sn1:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    814070 8sn1:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    814071 8sn1:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    814072 8sn1:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    814073 8sn1:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    814074 8sn1:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    814075 8sn1:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    814076 8sn1:H (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    814077 8sn1:K (3.3) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814078 8sn1:K (3.3) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814079 8sn2:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    814080 8sn2:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    814081 8sn2:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    814082 8sn2:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    814083 8sn2:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    814084 8sn2:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    814085 8sn2:D (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    814086 8sn2:D (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    814087 8sn2:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    814088 8sn2:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    814089 8sn2:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    814090 8sn2:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    814091 8sn2:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    814092 8sn2:H (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    814093 8sn2:H (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    814094 8sn2:K (3.6) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814095 8sn2:K (3.6) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814096 8sn3:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    814097 8sn3:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    814098 8sn3:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    814099 8sn3:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    814100 8sn3:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    814101 8sn3:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    814102 8sn3:D (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    814103 8sn3:D (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    814104 8sn3:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    814105 8sn3:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    814106 8sn3:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    814107 8sn3:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    814108 8sn3:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    814109 8sn3:H (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    814110 8sn3:H (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    814111 8sn3:K (3.8) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814112 8sn3:K (3.8) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814113 8sn3:L (3.8) BS01 dna 2.3.2.23
    2.3.2.24    		 GO:0000122 ... P61077 38242129
    814114 8sn3:M (3.8) BS01 dna ? N/A P0CG47 38242129
    814115 8sn4:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814116 8sn4:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814117 8sn4:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814118 8sn4:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    814119 8sn4:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814120 8sn4:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814121 8sn4:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814122 8sn4:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    814123 8sn4:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814124 8sn4:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814125 8sn4:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814126 8sn4:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    814127 8sn4:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814128 8sn4:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814129 8sn4:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814130 8sn4:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    814131 8sn4:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814132 8sn4:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814133 8sn4:M (3.7) BS01 dna ? N/A P0CG47 38242129
    814134 8sn5:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    814135 8sn5:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    814136 8sn5:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    814137 8sn5:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    814138 8sn5:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    814139 8sn5:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    814140 8sn5:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    814141 8sn5:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    814142 8sn5:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    814143 8sn5:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    814144 8sn5:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    814145 8sn5:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    814146 8sn5:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    814147 8sn5:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    814148 8sn5:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    814149 8sn5:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    814150 8sn5:K (3.9) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814151 8sn5:K (3.9) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814152 8sn6:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814153 8sn6:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814154 8sn6:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814155 8sn6:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814156 8sn6:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814157 8sn6:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814158 8sn6:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    814159 8sn6:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814160 8sn6:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814161 8sn6:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814162 8sn6:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    814163 8sn6:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814164 8sn6:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814165 8sn6:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814166 8sn6:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    814167 8sn6:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814168 8sn6:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814169 8sn7:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814170 8sn7:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814171 8sn7:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814172 8sn7:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    814173 8sn7:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814174 8sn7:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814175 8sn7:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814176 8sn7:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    814177 8sn7:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814178 8sn7:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814179 8sn7:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814180 8sn7:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    814181 8sn7:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814182 8sn7:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814183 8sn7:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814184 8sn7:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    814185 8sn7:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814186 8sn7:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    814187 8sn8:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814188 8sn8:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814189 8sn8:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814190 8sn8:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    814191 8sn8:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814192 8sn8:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814193 8sn8:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814194 8sn8:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    814195 8sn8:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    814196 8sn8:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    814197 8sn8:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    814198 8sn8:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    814199 8sn8:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    814200 8sn8:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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