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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    813801 8sl7:C (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    813802 8sl7:D (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    813803 8sl9:A (1.4) BS01 H73 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q5NGA7 N/A
    813804 8sld:A (2.85) BS01 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813805 8slf:A (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813806 8slf:B (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813807 8slf:B (2.9) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813808 8slf:B (2.9) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813809 8slg:A (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813810 8slg:A (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813811 8slg:A (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813812 8slg:B (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813813 8slg:B (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813814 8slg:B (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813815 8slh:A (3.05) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813816 8slh:A (3.05) BS02 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    813817 8slm:A (2.81) BS01 MN ? GO:0016787 ... Q1J1D6 38424107
    813818 8sln:A (2.2) BS01 dna ? GO:0016787 ... Q1J1D6 38424107
    813819 8sln:A (2.2) BS02 MN ? GO:0016787 ... Q1J1D6 38424107
    813820 8slo:A (1.55) BS01 ZN 3.4.11.- GO:0006508 ... O96935 38976500
    813821 8slo:A (1.55) BS02 BYW 3.4.11.- GO:0006508 ... O96935 38976500
    813822 8slv:A (2.32) BS01 CYS 3.2.1.20 GO:0005975 ... P13080 38428508
    813823 8slv:A (2.32) BS02 PDO 3.2.1.20 GO:0005975 ... P13080 38428508
    813824 8slv:A (2.32) BS03 CA 3.2.1.20 GO:0005975 ... P13080 38428508
    813825 8slv:A (2.32) BS04 CA 3.2.1.20 GO:0005975 ... P13080 38428508
    813826 8slx:A (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813827 8slx:A (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    813828 8slx:B (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813829 8slx:C (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813830 8slx:D (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813831 8slx:D (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    813832 8sly:A (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813833 8sly:A (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    813834 8sly:A (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    813835 8sly:B (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813836 8sly:B (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    813837 8sly:B (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    813838 8sly:C (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813839 8sly:C (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    813840 8sly:C (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    813841 8sly:D (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    813842 8sly:D (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    813843 8sly:D (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    813844 8sm5:A (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    813845 8sm5:C (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    813846 8sm5:E (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    813847 8sm5:G (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    813848 8sm5:G (2.61003) BS02 peptide ? GO:0042981 ... P03182 37776275
    813849 8sm5:I (2.61003) BS01 peptide ? GO:0042981 ... P03182 37776275
    813850 8sm6:A (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    813851 8sm6:A (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    813852 8sm6:B (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    813853 8sm6:B (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    813854 8sm6:C (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    813855 8sm6:C (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    813856 8sm6:D (1.39) BS01 FE ? GO:0005737 ... A0A540VG95 38198693
    813857 8sm6:D (1.39) BS02 FE ? GO:0005737 ... A0A540VG95 38198693
    813858 8sm7:A (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    813859 8sm7:A (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    813860 8sm7:B (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    813861 8sm7:B (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    813862 8sm7:D (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    813863 8sm7:D (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    813864 8sm7:G (2.2) BS01 FE ? GO:0005737 ... D3EI84 38198693
    813865 8sm7:G (2.2) BS02 FE ? GO:0005737 ... D3EI84 38198693
    813866 8sm8:A (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    813867 8sm8:A (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    813868 8sm8:A (2.0) BS03 MG ? GO:0005737 ... B6JH23 38198693
    813869 8sm8:A (2.0) BS04 MG ? GO:0005737 ... B6JH23 38198693
    813870 8sm8:D (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    813871 8sm8:D (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    813872 8sm8:G (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    813873 8sm8:G (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    813874 8sm8:J (2.0) BS01 FE ? GO:0005737 ... B6JH23 38198693
    813875 8sm8:J (2.0) BS02 FE ? GO:0005737 ... B6JH23 38198693
    813876 8sm9:B (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    813877 8sm9:B (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    813878 8sm9:D (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    813879 8sm9:D (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    813880 8sm9:F (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    813881 8sm9:F (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    813882 8sm9:H (2.3) BS01 FE ? GO:0005737 ... W7L2Y2 38198693
    813883 8sm9:H (2.3) BS02 FE ? GO:0005737 ... W7L2Y2 38198693
    813884 8sma:A (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    813885 8sma:A (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    813886 8sma:B (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    813887 8sma:B (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    813888 8sma:G (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    813889 8sma:G (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    813890 8sma:J (2.18) BS01 MN ? GO:0005737 ... A0A540VG95 38198693
    813891 8sma:J (2.18) BS02 MN ? GO:0005737 ... A0A540VG95 38198693
    813892 8smc:C (4.02) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38127736
    813893 8smc:C (4.02) BS02 TVT 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38127736
    813894 8smd:A (2.1) BS01 OJC ? GO:0000166 ... P0DW58 37992756
    813895 8smd:A (2.1) BS02 OJC ? GO:0000166 ... P0DW58 37992756
    813896 8smd:B (2.1) BS01 OJC ? GO:0000166 ... P0DW58 37992756
    813897 8smd:B (2.1) BS02 OJC ? GO:0000166 ... P0DW58 37992756
    813898 8smf:A (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813899 8smf:B (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813900 8smf:C (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813901 8smf:D (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813902 8smf:E (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813903 8smf:F (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813904 8smf:G (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813905 8smf:H (1.75) BS01 OJC ? GO:0046872 ... B6V311 37992756
    813906 8smg:B (2.1) BS01 MF6 ? GO:0046872 ... B6V311 37992756
    813907 8smh:F (1.37) BS01 dna ? GO:0003700 ... P17433 38042148
    813908 8smh:F (1.37) BS02 dna ? GO:0003700 ... P17433 38042148
    813909 8smj:F (1.39) BS01 dna ? GO:0003700 ... P17433 38042148
    813910 8smj:F (1.39) BS02 dna ? GO:0003700 ... P17433 38042148
    813911 8smk:A (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813912 8smk:A (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813913 8smk:A (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813914 8smk:A (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813915 8smk:D (3.5) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813916 8smk:D (3.5) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813917 8smk:D (3.5) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813918 8smk:D (3.5) BS04 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813919 8sml:A (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813920 8sml:A (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813921 8sml:A (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813922 8sml:D (3.3) BS01 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813923 8sml:D (3.3) BS02 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813924 8sml:D (3.3) BS03 CA 3.5.3.15 GO:0004668 ... Q9UM07 38308046
    813925 8smn:A (3.2) BS01 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    813926 8smn:A (3.2) BS02 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    813927 8smn:A (3.2) BS03 BDP 2.4.1.212 GO:0016020 ... P13563 N/A
    813928 8smo:A (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813929 8smo:C (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813930 8smo:E (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813931 8smo:G (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813932 8smo:I (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813933 8smo:K (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813934 8smo:M (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813935 8smo:O (3.0) BS01 peptide ? GO:0003723 ... P11940 N/A
    813936 8smp:A (3.4) BS01 UDP 2.4.1.212 GO:0016020 ... P13563 N/A
    813937 8smr:C (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    813938 8smr:C (2.7) BS02 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    813939 8smr:D (2.7) BS01 I7Y ? GO:0005886 ... Q9HVY5 37751552
    813940 8smr:D (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    813941 8smr:D (2.7) BS03 HEM ? GO:0005886 ... Q9HVY5 37751552
    813942 8smr:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    813943 8smr:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    813944 8smr:E (2.7) BS02 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    813945 8smr:E (2.7) BS03 HEM 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    813946 8smr:F (2.7) BS01 CA ? GO:0004129 ... Q9I3G4 37751552
    813947 8smr:F (2.7) BS02 HEC ? GO:0004129 ... Q9I3G4 37751552
    813948 8smr:G (2.7) BS01 HEC ? GO:0004129 ... Q9I3G5 37751552
    813949 8smr:G (2.7) BS02 HEC ? GO:0004129 ... Q9I3G5 37751552
    813950 8smr:I (2.7) BS01 HEM ? GO:0005886 ... Q9HVY5 37751552
    813951 8smr:I (2.7) BS02 HEM ? GO:0005886 ... Q9HVY5 37751552
    813952 8smr:I (2.7) BS03 U10 ? GO:0005886 ... Q9HVY5 37751552
    813953 8smr:I (2.7) BS04 I7Y ? GO:0005886 ... Q9HVY5 37751552
    813954 8smr:J (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    813955 8smr:J (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    813956 8smr:K (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    813957 8smr:K (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    813958 8smr:K (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    813959 8smr:M (2.7) BS01 peptide ? GO:0009055 ... Q9HVY6 37751552
    813960 8smr:M (2.7) BS02 HEC ? GO:0009055 ... Q9HVY6 37751552
    813961 8smr:N (2.7) BS01 peptide ? GO:0005506 ... P00106 37751552
    813962 8smr:N (2.7) BS02 HEC ? GO:0005506 ... P00106 37751552
    813963 8smr:N (2.7) BS03 HEC ? GO:0005506 ... P00106 37751552
    813964 8smr:Z (2.7) BS01 FES 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    813965 8smr:Z (2.7) BS02 I7Y 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    813966 8smr:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    813967 8sms:A (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    813968 8sms:B (1.93) BS01 G7U 2.3.1.41 GO:0004315 ... P0A953 37829009
    813969 8smu:A (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    813970 8smu:B (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    813971 8smu:C (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    813972 8smu:C (2.45) BS02 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    813973 8smu:D (2.45) BS01 HEM ? GO:0006091 ... P42212
    Q6NIZ1    		 37729854
    813974 8smw:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    813975 8smw:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    813976 8smw:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    813977 8smw:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    813978 8smw:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    813979 8smw:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    813980 8smw:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    813981 8smw:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    813982 8smw:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    813983 8smw:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    813984 8smw:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    813985 8smw:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    813986 8smw:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    813987 8smw:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    813988 8smw:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    813989 8smw:K (3.3) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    813990 8smw:K (3.3) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    813991 8smx:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    813992 8smx:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    813993 8smx:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    813994 8smx:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    813995 8smx:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    813996 8smx:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    813997 8smx:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    813998 8smx:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    813999 8smx:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    814000 8smx:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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