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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    813001 8sgy:V (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813002 8sgy:Y (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813003 8sgy:Z (8.62) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813004 8sgz:B (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813005 8sgz:C (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    813006 8sgz:D (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    813007 8sgz:E (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    813008 8sgz:F (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    813009 8sgz:G (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    813010 8sgz:H (3.2) BS01 BTI ? GO:0004658 ... A0A640KR17 37128595
    813011 8sgz:S (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813012 8sgz:V (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813013 8sgz:X (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813014 8sgz:Y (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813015 8sgz:Z (3.2) BS01 BTI 6.4.1.3 GO:0004658 ... A0A640KC69 37128595
    813016 8sh0:A (2.16) BS01 dna ? GO:0000723 ... Q9NUX5 37590346
    813017 8sh1:A (2.6) BS01 dna ? GO:0000723 ... Q9NUX5 37590346
    813018 8sh1:A (2.6) BS02 dna ? GO:0000723 ... Q9NUX5 37590346
    813019 8sh3:C (2.8) BS01 AV0 ? GO:0005886 ... I3L8V6 38184688
    813020 8sh3:C (2.8) BS02 IOD ? GO:0005886 ... I3L8V6 38184688
    813021 8sh3:C (2.8) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    813022 8sh3:C (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    813023 8sh3:C (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    813024 8sh3:C (2.8) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    813025 8sh3:C (2.8) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    813026 8sh3:C (2.8) BS08 LBN ? GO:0005886 ... I3L8V6 38184688
    813027 8sh3:C (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    813028 8sh3:D (2.8) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    813029 8sh3:D (2.8) BS02 AV0 ? GO:0005886 ... I3L8V6 38184688
    813030 8sh3:D (2.8) BS03 IOD ? GO:0005886 ... I3L8V6 38184688
    813031 8sh3:D (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    813032 8sh3:D (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    813033 8sh3:D (2.8) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    813034 8sh3:D (2.8) BS07 LBN ? GO:0005886 ... I3L8V6 38184688
    813035 8sh3:D (2.8) BS08 CLR ? GO:0005886 ... I3L8V6 38184688
    813036 8sh3:D (2.8) BS09 LBN ? GO:0005886 ... I3L8V6 38184688
    813037 8sh7:A (2.8) BS01 GTP 3.6.5.- GO:0000226 ... Q71U36 N/A
    813038 8sh7:B (2.8) BS01 GDP ? GO:0000226 ... P68371 N/A
    813039 8sh8:A (0.9) BS01 AR6 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 N/A
    813040 8sh9:A (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    813041 8sh9:A (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813042 8sh9:B (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    813043 8sh9:B (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813044 8sh9:D (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    813045 8sh9:D (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813046 8sh9:E (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    813047 8sh9:E (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813048 8sh9:G (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    813049 8sh9:G (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813050 8sh9:H (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813051 8sh9:H (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813052 8sh9:Q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    813053 8sh9:Q (2.7) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813054 8sh9:Z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    813055 8sh9:Z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813056 8sh9:a (2.7) BS01 ADP ? GO:0000242 ... P17987 37852256
    813057 8sh9:a (2.7) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813058 8sh9:b (2.7) BS01 ADP ? GO:0002199 ... P78371 37852256
    813059 8sh9:b (2.7) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813060 8sh9:d (2.7) BS01 ADP ? GO:0002199 ... P50991 37852256
    813061 8sh9:d (2.7) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813062 8sh9:e (2.7) BS01 ADP ? GO:0003730 ... P48643 37852256
    813063 8sh9:e (2.7) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813064 8sh9:g (2.7) BS01 ADP ? GO:0002199 ... P49368 37852256
    813065 8sh9:g (2.7) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813066 8sh9:h (2.7) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813067 8sh9:h (2.7) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813068 8sh9:q (2.7) BS01 ADP ? GO:0002199 ... P50990 37852256
    813069 8sh9:q (2.7) BS02 MG ? GO:0002199 ... P50990 37852256
    813070 8sh9:q (2.7) BS03 AF3 ? GO:0002199 ... P50990 37852256
    813071 8sh9:z (2.7) BS01 ADP ? GO:0003723 ... P40227 37852256
    813072 8sh9:z (2.7) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813073 8sha:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813074 8sha:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813075 8sha:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813076 8sha:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813077 8sha:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813078 8sha:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813079 8sha:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813080 8sha:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813081 8sha:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813082 8sha:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813083 8sha:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813084 8sha:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813085 8sha:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813086 8sha:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813087 8sha:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813088 8sha:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813089 8sha:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813090 8sha:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813091 8sha:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813092 8sha:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813093 8sha:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813094 8sha:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813095 8sha:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813096 8sha:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813097 8sha:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813098 8sha:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813099 8sha:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813100 8sha:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813101 8sha:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813102 8sha:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813103 8sha:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    813104 8sha:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813105 8shb:A (2.09) BS01 GV3 2.1.1.319 GO:0016274 ... O60678 N/A
    813106 8shc:C (3.0) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    813107 8shc:C (3.0) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    813108 8shc:C (3.0) BS03 LBN ? GO:0005886 ... I3L8V6 38184688
    813109 8shc:C (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    813110 8shc:C (3.0) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    813111 8shc:C (3.0) BS06 NFL ? GO:0005886 ... I3L8V6 38184688
    813112 8shc:C (3.0) BS07 NFL ? GO:0005886 ... I3L8V6 38184688
    813113 8shc:D (3.0) BS01 LBN ? GO:0005886 ... I3L8V6 38184688
    813114 8shc:D (3.0) BS02 NFL ? GO:0005886 ... I3L8V6 38184688
    813115 8shc:D (3.0) BS03 NFL ? GO:0005886 ... I3L8V6 38184688
    813116 8shc:D (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    813117 8shc:D (3.0) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    813118 8shc:D (3.0) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    813119 8shc:D (3.0) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    813120 8shd:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    813121 8shd:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813122 8shd:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    813123 8shd:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813124 8shd:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    813125 8shd:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813126 8shd:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    813127 8shd:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813128 8shd:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    813129 8shd:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813130 8shd:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813131 8shd:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813132 8shd:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    813133 8shd:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813134 8shd:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    813135 8shd:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    813136 8shd:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    813137 8shd:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    813138 8shd:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813139 8shd:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    813140 8shd:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813141 8shd:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    813142 8shd:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813143 8shd:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    813144 8shd:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813145 8shd:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    813146 8shd:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813147 8shd:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813148 8shd:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813149 8shd:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    813150 8shd:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813151 8shd:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    813152 8shd:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813153 8she:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    813154 8she:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813155 8she:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    813156 8she:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813157 8she:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    813158 8she:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813159 8she:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    813160 8she:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813161 8she:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    813162 8she:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813163 8she:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813164 8she:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813165 8she:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    813166 8she:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813167 8she:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    813168 8she:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    813169 8she:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    813170 8she:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    813171 8she:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813172 8she:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    813173 8she:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813174 8she:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    813175 8she:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813176 8she:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    813177 8she:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813178 8she:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    813179 8she:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813180 8she:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813181 8she:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813182 8she:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    813183 8she:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813184 8she:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    813185 8she:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    813186 8shf:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    813187 8shf:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    813188 8shf:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    813189 8shf:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    813190 8shf:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    813191 8shf:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    813192 8shf:E (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    813193 8shf:E (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    813194 8shf:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    813195 8shf:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    813196 8shf:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    813197 8shf:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    813198 8shf:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    813199 8shf:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    813200 8shf:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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