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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812601 8sf7:WE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812602 8sf7:WF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812603 8sf7:WG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812604 8sf7:WH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812605 8sf7:WI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812606 8sf7:WJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812607 8sf7:WK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812608 8sf7:WL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812609 8sf7:WM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812610 8sf7:WN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812611 8sf8:A (1.7) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 38330278
    812612 8sf8:A (1.7) BS02 ZWG 2.7.11.11 GO:0001669 ... P00517 38330278
    812613 8sf9:D (1.8) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812614 8sf9:D (1.8) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812615 8sfa:D (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812616 8sfa:D (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812617 8sfa:S (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812618 8sfa:S (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812619 8sfa:b (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812620 8sfa:b (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812621 8sfa:t (2.32) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812622 8sfa:t (2.32) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812623 8sfb:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812624 8sfb:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812625 8sfc:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812626 8sfc:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812627 8sfd:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812628 8sfd:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812629 8sfe:A (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    812630 8sfe:B (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    812631 8sfe:D (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    812632 8sfe:E (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    812633 8sfe:G (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    812634 8sfe:H (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812635 8sfe:Q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    812636 8sfe:Z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    812637 8sfe:a (3.36) BS01 ADP ? GO:0000242 ... P17987 37852256
    812638 8sfe:b (3.36) BS01 ADP ? GO:0002199 ... P78371 37852256
    812639 8sfe:d (3.36) BS01 ADP ? GO:0002199 ... P50991 37852256
    812640 8sfe:e (3.36) BS01 ADP ? GO:0003730 ... P48643 37852256
    812641 8sfe:g (3.36) BS01 ADP ? GO:0002199 ... P49368 37852256
    812642 8sfe:h (3.36) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812643 8sfe:q (3.36) BS01 ADP ? GO:0002199 ... P50990 37852256
    812644 8sfe:z (3.36) BS01 ADP ? GO:0003723 ... P40227 37852256
    812645 8sff:A (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    812646 8sff:A (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    812647 8sff:B (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    812648 8sff:B (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    812649 8sff:D (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    812650 8sff:D (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    812651 8sff:E (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    812652 8sff:E (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    812653 8sff:G (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    812654 8sff:G (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    812655 8sff:H (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812656 8sff:H (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    812657 8sff:Q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    812658 8sff:Q (3.2) BS02 MG ? GO:0002199 ... P50990 37852256
    812659 8sff:Q (3.2) BS03 AF3 ? GO:0002199 ... P50990 37852256
    812660 8sff:Z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    812661 8sff:Z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    812662 8sff:a (3.2) BS01 ADP ? GO:0000242 ... P17987 37852256
    812663 8sff:a (3.2) BS02 AF3 ? GO:0000242 ... P17987 37852256
    812664 8sff:b (3.2) BS01 ADP ? GO:0002199 ... P78371 37852256
    812665 8sff:b (3.2) BS02 AF3 ? GO:0002199 ... P78371 37852256
    812666 8sff:d (3.2) BS01 ADP ? GO:0002199 ... P50991 37852256
    812667 8sff:d (3.2) BS02 AF3 ? GO:0002199 ... P50991 37852256
    812668 8sff:e (3.2) BS01 ADP ? GO:0003730 ... P48643 37852256
    812669 8sff:e (3.2) BS02 AF3 ? GO:0003730 ... P48643 37852256
    812670 8sff:g (3.2) BS01 ADP ? GO:0002199 ... P49368 37852256
    812671 8sff:g (3.2) BS02 AF3 ? GO:0002199 ... P49368 37852256
    812672 8sff:h (3.2) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812673 8sff:h (3.2) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    812674 8sff:q (3.2) BS01 ADP ? GO:0002199 ... P50990 37852256
    812675 8sff:q (3.2) BS02 AF3 ? GO:0002199 ... P50990 37852256
    812676 8sff:z (3.2) BS01 ADP ? GO:0003723 ... P40227 37852256
    812677 8sff:z (3.2) BS02 AF3 ? GO:0003723 ... P40227 37852256
    812678 8sfk:D (1.4) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812679 8sfk:D (1.4) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812680 8sfm:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812681 8sfm:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812682 8sft:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    812683 8sft:A (2.75) BS02 KMP ? GO:0000166 ... T1KUK4 N/A
    812684 8sft:B (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    812685 8sft:B (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    812686 8sft:C (2.75) BS01 KMP ? GO:0000166 ... T1KUK4 N/A
    812687 8sft:C (2.75) BS02 UDP ? GO:0000166 ... T1KUK4 N/A
    812688 8sft:D (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    812689 8sfu:A (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    812690 8sfu:A (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    812691 8sfu:B (1.8) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    812692 8sfu:B (1.8) BS02 ZWN ? GO:0000166 ... T1KUK4 N/A
    812693 8sfw:A (2.75) BS01 UDP ? GO:0000166 ... T1KUK4 N/A
    812694 8sfw:A (2.75) BS02 QUE ? GO:0000166 ... T1KUK4 N/A
    812695 8sfy:A (2.35) BS01 UPG ? GO:0000166 ... T1KUK4 N/A
    812696 8sg1:R (2.94) BS01 peptide ? GO:0004930 ... Q99788 38055679
    812697 8sg1:R (2.94) BS02 CLR ? GO:0004930 ... Q99788 38055679
    812698 8sg2:A (-1.00) BS01 peptide 5.2.1.8 GO:0000413 ... Q13526 38687676
    812699 8sg5:A (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812700 8sg5:A (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812701 8sg5:A (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812702 8sg5:A (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812703 8sg5:B (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812704 8sg5:B (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812705 8sg5:B (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812706 8sg5:B (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812707 8sg5:C (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812708 8sg5:C (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812709 8sg5:C (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812710 8sg5:C (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812711 8sg5:D (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812712 8sg5:D (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812713 8sg5:D (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812714 8sg5:D (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812715 8sg5:E (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812716 8sg5:E (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812717 8sg5:E (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812718 8sg5:E (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812719 8sg5:F (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812720 8sg5:F (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812721 8sg5:F (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812722 8sg5:F (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812723 8sg5:G (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812724 8sg5:G (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812725 8sg5:G (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812726 8sg5:G (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812727 8sg5:H (2.8) BS01 HEM 1.14.14.1 GO:0002933 ... P20815 37770228
    812728 8sg5:H (2.8) BS02 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812729 8sg5:H (2.8) BS03 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812730 8sg5:H (2.8) BS04 CL6 1.14.14.1 GO:0002933 ... P20815 37770228
    812731 8sg7:B (2.4) BS01 peptide ? GO:0005737 ... P52293 38441555
    812732 8sg8:A (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    812733 8sg8:A (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    812734 8sg8:B (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    812735 8sg8:B (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    812736 8sg8:D (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    812737 8sg8:D (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    812738 8sg8:E (3.0) BS01 peptide ? GO:0003730 ... P48643 37852256
    812739 8sg8:E (3.0) BS02 ADP ? GO:0003730 ... P48643 37852256
    812740 8sg8:E (3.0) BS03 AF3 ? GO:0003730 ... P48643 37852256
    812741 8sg8:G (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    812742 8sg8:G (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    812743 8sg8:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812744 8sg8:H (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    812745 8sg8:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    812746 8sg8:Q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    812747 8sg8:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    812748 8sg8:Z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    812749 8sg8:a (3.0) BS01 ADP ? GO:0000242 ... P17987 37852256
    812750 8sg8:a (3.0) BS02 AF3 ? GO:0000242 ... P17987 37852256
    812751 8sg8:b (3.0) BS01 ADP ? GO:0002199 ... P78371 37852256
    812752 8sg8:b (3.0) BS02 AF3 ? GO:0002199 ... P78371 37852256
    812753 8sg8:d (3.0) BS01 ADP ? GO:0002199 ... P50991 37852256
    812754 8sg8:d (3.0) BS02 AF3 ? GO:0002199 ... P50991 37852256
    812755 8sg8:e (3.0) BS01 ADP ? GO:0003730 ... P48643 37852256
    812756 8sg8:e (3.0) BS02 AF3 ? GO:0003730 ... P48643 37852256
    812757 8sg8:g (3.0) BS01 ADP ? GO:0002199 ... P49368 37852256
    812758 8sg8:g (3.0) BS02 AF3 ? GO:0002199 ... P49368 37852256
    812759 8sg8:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812760 8sg8:h (3.0) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    812761 8sg8:q (3.0) BS01 ADP ? GO:0002199 ... P50990 37852256
    812762 8sg8:q (3.0) BS02 AF3 ? GO:0002199 ... P50990 37852256
    812763 8sg8:z (3.0) BS01 ADP ? GO:0003723 ... P40227 37852256
    812764 8sg8:z (3.0) BS02 AF3 ? GO:0003723 ... P40227 37852256
    812765 8sg9:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    812766 8sg9:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    812767 8sg9:B (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    812768 8sg9:B (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    812769 8sg9:D (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    812770 8sg9:D (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    812771 8sg9:E (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    812772 8sg9:E (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    812773 8sg9:G (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    812774 8sg9:G (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    812775 8sg9:H (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812776 8sg9:H (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    812777 8sg9:Q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    812778 8sg9:Q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    812779 8sg9:Z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    812780 8sg9:Z (2.9) BS02 MG ? GO:0003723 ... P40227 37852256
    812781 8sg9:Z (2.9) BS03 AF3 ? GO:0003723 ... P40227 37852256
    812782 8sg9:a (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    812783 8sg9:a (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    812784 8sg9:b (2.9) BS01 ADP ? GO:0002199 ... P78371 37852256
    812785 8sg9:b (2.9) BS02 AF3 ? GO:0002199 ... P78371 37852256
    812786 8sg9:d (2.9) BS01 ADP ? GO:0002199 ... P50991 37852256
    812787 8sg9:d (2.9) BS02 AF3 ? GO:0002199 ... P50991 37852256
    812788 8sg9:e (2.9) BS01 ADP ? GO:0003730 ... P48643 37852256
    812789 8sg9:e (2.9) BS02 AF3 ? GO:0003730 ... P48643 37852256
    812790 8sg9:g (2.9) BS01 ADP ? GO:0002199 ... P49368 37852256
    812791 8sg9:g (2.9) BS02 AF3 ? GO:0002199 ... P49368 37852256
    812792 8sg9:h (2.9) BS01 ADP ? GO:0005515 ... Q99832 37852256
    812793 8sg9:h (2.9) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    812794 8sg9:q (2.9) BS01 ADP ? GO:0002199 ... P50990 37852256
    812795 8sg9:q (2.9) BS02 AF3 ? GO:0002199 ... P50990 37852256
    812796 8sg9:z (2.9) BS01 ADP ? GO:0003723 ... P40227 37852256
    812797 8sg9:z (2.9) BS02 AF3 ? GO:0003723 ... P40227 37852256
    812798 8sgb:A (2.80002) BS01 FO4 ? GO:0003677 ... P15813 N/A
    812799 8sgc:A (2.9) BS01 ADP ? GO:0000242 ... P17987 37852256
    812800 8sgc:A (2.9) BS02 AF3 ? GO:0000242 ... P17987 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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