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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812201 8sex:D (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    812202 8sey:A (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    812203 8sey:A (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    812204 8sey:B (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    812205 8sey:B (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    812206 8sey:C (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    812207 8sey:C (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    812208 8sey:D (2.99) BS01 ADN ? GO:0003151 ... P11716 37192614
    812209 8sey:D (2.99) BS02 ZN ? GO:0003151 ... P11716 37192614
    812210 8sez:A (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    812211 8sez:A (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    812212 8sez:B (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    812213 8sez:B (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    812214 8sez:C (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    812215 8sez:C (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    812216 8sez:D (3.54) BS01 ADE ? GO:0003151 ... P11716 37192614
    812217 8sez:D (3.54) BS02 ZN ? GO:0003151 ... P11716 37192614
    812218 8sf0:A (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    812219 8sf0:A (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    812220 8sf0:B (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    812221 8sf0:B (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    812222 8sf0:C (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    812223 8sf0:C (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    812224 8sf0:D (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    812225 8sf0:D (2.9) BS02 ZN ? GO:0003151 ... P11716 37192614
    812226 8sf1:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    812227 8sf2:D (1.5) BS01 FE 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812228 8sf2:D (1.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 N/A
    812229 8sf3:A (1.7) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    812230 8sf3:A (1.7) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    812231 8sf7:AA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812232 8sf7:AB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812233 8sf7:AB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812234 8sf7:AC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812235 8sf7:AD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812236 8sf7:AE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812237 8sf7:AF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812238 8sf7:AG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812239 8sf7:AH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812240 8sf7:AI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812241 8sf7:AJ (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812242 8sf7:AJ (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812243 8sf7:AK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812244 8sf7:AL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812245 8sf7:AM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812246 8sf7:AN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812247 8sf7:BA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812248 8sf7:BB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812249 8sf7:BC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812250 8sf7:BD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812251 8sf7:BE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812252 8sf7:BF (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812253 8sf7:BF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812254 8sf7:BG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812255 8sf7:BH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812256 8sf7:BI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812257 8sf7:BJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812258 8sf7:BK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812259 8sf7:BL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812260 8sf7:BM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812261 8sf7:BN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812262 8sf7:CA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812263 8sf7:CB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812264 8sf7:CC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812265 8sf7:CD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812266 8sf7:CE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812267 8sf7:CF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812268 8sf7:CG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812269 8sf7:CH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812270 8sf7:CH (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812271 8sf7:CI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812272 8sf7:CJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812273 8sf7:CK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812274 8sf7:CL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812275 8sf7:CL (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812276 8sf7:CM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812277 8sf7:CN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812278 8sf7:DA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812279 8sf7:DB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812280 8sf7:DB (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812281 8sf7:DC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812282 8sf7:DD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812283 8sf7:DD (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812284 8sf7:DE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812285 8sf7:DF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812286 8sf7:DG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812287 8sf7:DH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812288 8sf7:DI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812289 8sf7:DJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812290 8sf7:DK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812291 8sf7:DL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812292 8sf7:DM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812293 8sf7:DN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812294 8sf7:EA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812295 8sf7:EB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812296 8sf7:EC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812297 8sf7:ED (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812298 8sf7:ED (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812299 8sf7:EE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812300 8sf7:EF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812301 8sf7:EF (4.1) BS02 GTP ? GO:0000226 ... P41352 38598282
    812302 8sf7:EG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812303 8sf7:EH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812304 8sf7:EI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812305 8sf7:EJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812306 8sf7:EK (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812307 8sf7:EK (4.1) BS02 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812308 8sf7:EL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812309 8sf7:EM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812310 8sf7:EN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812311 8sf7:FA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812312 8sf7:FB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812313 8sf7:FC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812314 8sf7:FD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812315 8sf7:FE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812316 8sf7:FF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812317 8sf7:FG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812318 8sf7:FH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812319 8sf7:FI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812320 8sf7:FJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812321 8sf7:FK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812322 8sf7:FL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812323 8sf7:FM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812324 8sf7:FN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812325 8sf7:GA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812326 8sf7:GB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812327 8sf7:GC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812328 8sf7:GD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812329 8sf7:GD (4.1) BS02 MG ? GO:0000226 ... P41352 38598282
    812330 8sf7:GD (4.1) BS03 GDP ? GO:0000226 ... P41352 38598282
    812331 8sf7:GE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812332 8sf7:GF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812333 8sf7:GG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812334 8sf7:GH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812335 8sf7:GI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812336 8sf7:GJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812337 8sf7:GK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812338 8sf7:GL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812339 8sf7:GL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812340 8sf7:GM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812341 8sf7:GN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812342 8sf7:HA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812343 8sf7:HB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812344 8sf7:HC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812345 8sf7:HD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812346 8sf7:HD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812347 8sf7:HE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812348 8sf7:HF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812349 8sf7:HG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812350 8sf7:HH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812351 8sf7:HI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812352 8sf7:HJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812353 8sf7:HK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812354 8sf7:HL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812355 8sf7:HM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812356 8sf7:HN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812357 8sf7:IA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812358 8sf7:IB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812359 8sf7:IB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812360 8sf7:IC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812361 8sf7:ID (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812362 8sf7:ID (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812363 8sf7:IE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812364 8sf7:IF (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812365 8sf7:IF (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812366 8sf7:IG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812367 8sf7:IH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812368 8sf7:II (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812369 8sf7:IJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812370 8sf7:IK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812371 8sf7:IL (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812372 8sf7:IM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812373 8sf7:IN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812374 8sf7:JA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812375 8sf7:JA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812376 8sf7:JB (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812377 8sf7:JB (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812378 8sf7:JC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812379 8sf7:JC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812380 8sf7:JD (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812381 8sf7:JD (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812382 8sf7:JE (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812383 8sf7:JE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812384 8sf7:JF (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812385 8sf7:JG (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812386 8sf7:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812387 8sf7:JH (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812388 8sf7:JI (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812389 8sf7:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812390 8sf7:JJ (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812391 8sf7:JK (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812392 8sf7:JL (4.1) BS01 GTP ? GO:0000226 ... P41352 38598282
    812393 8sf7:JL (4.1) BS02 GDP ? GO:0000226 ... P41352 38598282
    812394 8sf7:JM (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812395 8sf7:JM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 38598282
    812396 8sf7:JN (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812397 8sf7:KA (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812398 8sf7:KB (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    812399 8sf7:KC (4.1) BS01 GTP 3.6.5.- GO:0000226 ... P41351 38598282
    812400 8sf7:KD (4.1) BS01 GDP ? GO:0000226 ... P41352 38598282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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