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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812001 8scl:D (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812002 8scl:D (2.44) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812003 8scm:A (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812004 8scm:A (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812005 8scm:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812006 8scm:A (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812007 8scm:D (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812008 8scm:D (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812009 8scm:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812010 8scm:D (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812011 8scn:A (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812012 8scn:A (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812013 8scn:A (2.3) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812014 8scn:D (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812015 8scn:D (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812016 8scn:D (2.3) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812017 8sco:A (1.92) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812018 8sco:A (1.92) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812019 8sco:A (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812020 8sco:A (1.92) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812021 8sco:D (1.92) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812022 8sco:D (1.92) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812023 8sco:D (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812024 8sco:D (1.92) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812025 8scp:A (2.08) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812026 8scp:A (2.08) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812027 8scp:A (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812028 8scp:A (2.08) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812029 8scp:D (2.08) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812030 8scp:D (2.08) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812031 8scp:D (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812032 8scp:D (2.08) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812033 8scq:A (2.18) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812034 8scq:A (2.18) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812035 8scq:A (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812036 8scq:A (2.18) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812037 8scq:D (2.18) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812038 8scq:D (2.18) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812039 8scq:D (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812040 8scq:D (2.18) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812041 8scr:A (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812042 8scr:A (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812043 8scr:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812044 8scr:A (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812045 8scr:D (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812046 8scr:D (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812047 8scr:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812048 8scr:D (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812049 8scs:A (2.1) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812050 8scs:A (2.1) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812051 8scs:A (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812052 8scs:A (2.1) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812053 8scs:D (2.1) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812054 8scs:D (2.1) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812055 8scs:D (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812056 8scs:D (2.1) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812057 8sct:A (2.34) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812058 8sct:A (2.34) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812059 8sct:A (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812060 8sct:A (2.34) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812061 8sct:D (2.34) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812062 8sct:D (2.34) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812063 8sct:D (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812064 8sct:D (2.34) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812065 8scu:A (2.38) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812066 8scu:A (2.38) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812067 8scu:A (2.38) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812068 8scu:D (2.38) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812069 8scu:D (2.38) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812070 8scu:D (2.38) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    812071 8scu:D (2.38) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    812072 8scz:A (3.4) BS01 rna 3.6.4.13 GO:0002230 ... O95786 N/A
    812073 8scz:A (3.4) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    812074 8sd0:A (3.8) BS01 rna 3.6.4.13 GO:0002230 ... O95786 N/A
    812075 8sd0:A (3.8) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    812076 8sd1:A (1.298) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    812077 8sd2:A (2.81) BS01 FIE ? N/A P03452 38753503
    812078 8sd2:B (2.81) BS01 FIE ? N/A P03452 38753503
    812079 8sd4:A (3.11) BS01 ZW4 ? N/A P03452 38753503
    812080 8sd4:B (3.11) BS01 ZW4 ? N/A P03452 38753503
    812081 8sd6:A (1.397) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    812082 8sd7:A (1.704) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    812083 8sd8:A (1.789) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    812084 8sd9:A (1.904) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    812085 8sdb:A (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812086 8sdb:A (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812087 8sdb:A (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812088 8sdb:A (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812089 8sdb:A (3.0) BS05 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812090 8sdb:A (3.0) BS06 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812091 8sdb:A (3.0) BS07 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812092 8sdb:A (3.0) BS08 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812093 8sdb:A (3.0) BS09 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812094 8sdb:B (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812095 8sdb:B (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812096 8sdb:B (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812097 8sdb:B (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812098 8sdb:B (3.0) BS05 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812099 8sdb:B (3.0) BS06 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812100 8sdb:C (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812101 8sdb:C (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812102 8sdb:C (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812103 8sdb:C (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    812104 8sdk:A (2.1) BS01 CA 3.4.21.64 GO:0004252 ... P06873 37223996
    812105 8sdo:A (2.01) BS01 peptide 3.6.1.- N/A Q6PL18 38733345
    812106 8sdq:A (1.85) BS01 peptide 3.6.1.- N/A Q6PL18 38733345
    812107 8sdr:A (1.35) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    812108 8sds:A (1.63) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    812109 8sdt:A (1.38) BS01 ZXM 3.5.2.6 GO:0008800 ... P24735 37850746
    812110 8sdv:A (1.42) BS01 ZXM 3.5.2.6 GO:0008800 ... P24735 37850746
    812111 8sdw:A (1.75) BS01 G3D 3.6.5.2 GO:0000139 ... P84077 38574162
    812112 8sdx:A (2.69) BS01 peptide ? N/A Q9ULI0 38733345
    812113 8sdx:B (2.69) BS01 peptide ? N/A Q9ULI0 38733345
    812114 8sdz:A (2.86) BS01 RTO ? GO:0005452 ... O35956 37845412
    812115 8se5:A (1.43) BS01 ZW7 ? GO:0045954 ... P26718 37778428
    812116 8se5:B (1.43) BS01 ZW7 ? GO:0045954 ... P26718 37778428
    812117 8se6:A (1.36) BS01 ZWA ? GO:0045954 ... P26718 37778428
    812118 8se6:B (1.36) BS01 ZWA ? GO:0045954 ... P26718 37778428
    812119 8se9:A (3.2) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    812120 8sea:A (3.4) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    812121 8seb:A (3.24) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    812122 8sen:A (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    812123 8sen:B (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    812124 8sen:C (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    812125 8sen:D (3.49) BS01 ZN ? GO:0003151 ... P11716 37192614
    812126 8seo:A (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    812127 8seo:A (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    812128 8seo:B (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    812129 8seo:B (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    812130 8seo:C (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    812131 8seo:C (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    812132 8seo:D (3.92) BS01 AGS ? GO:0003151 ... P11716 37192614
    812133 8seo:D (3.92) BS02 ZN ? GO:0003151 ... P11716 37192614
    812134 8sep:A (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    812135 8sep:A (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    812136 8sep:B (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    812137 8sep:B (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    812138 8sep:C (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    812139 8sep:C (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    812140 8sep:D (3.57) BS01 ADP ? GO:0003151 ... P11716 37192614
    812141 8sep:D (3.57) BS02 ZN ? GO:0003151 ... P11716 37192614
    812142 8seq:A (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    812143 8seq:A (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    812144 8seq:B (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    812145 8seq:B (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    812146 8seq:C (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    812147 8seq:C (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    812148 8seq:D (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    812149 8seq:D (3.4) BS02 ZN ? GO:0003151 ... P11716 37192614
    812150 8ser:A (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    812151 8ser:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812152 8ser:B (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    812153 8ser:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812154 8ser:C (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    812155 8ser:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812156 8ser:D (3.42) BS01 ADN ? GO:0003151 ... P11716 37192614
    812157 8ser:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812158 8ses:A (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    812159 8ses:A (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    812160 8ses:B (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    812161 8ses:B (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    812162 8ses:C (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    812163 8ses:C (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    812164 8ses:D (3.98) BS01 ZN ? GO:0003151 ... P11716 37192614
    812165 8ses:D (3.98) BS02 ADE ? GO:0003151 ... P11716 37192614
    812166 8set:A (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    812167 8set:A (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812168 8set:B (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    812169 8set:B (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812170 8set:C (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    812171 8set:C (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812172 8set:D (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    812173 8set:D (3.42) BS02 ZN ? GO:0003151 ... P11716 37192614
    812174 8seu:A (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    812175 8seu:B (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    812176 8seu:C (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    812177 8seu:D (3.0) BS01 ZN ? GO:0003151 ... P11716 37192614
    812178 8sev:A (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    812179 8sev:A (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    812180 8sev:B (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    812181 8sev:B (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    812182 8sev:C (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    812183 8sev:C (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    812184 8sev:D (3.17) BS01 AGS ? GO:0003151 ... P11716 37192614
    812185 8sev:D (3.17) BS02 ZN ? GO:0003151 ... P11716 37192614
    812186 8sew:A (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    812187 8sew:A (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    812188 8sew:B (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    812189 8sew:B (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    812190 8sew:C (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    812191 8sew:C (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    812192 8sew:D (2.89) BS01 ADP ? GO:0003151 ... P11716 37192614
    812193 8sew:D (2.89) BS02 ZN ? GO:0003151 ... P11716 37192614
    812194 8sex:A (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    812195 8sex:A (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    812196 8sex:B (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    812197 8sex:B (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    812198 8sex:C (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    812199 8sex:C (2.84) BS02 ZN ? GO:0003151 ... P11716 37192614
    812200 8sex:D (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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