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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    811401 8s1u:M (3.4) BS01 rna ? GO:0000049 ... P14577 38811035
    811402 8s1u:M (3.4) BS02 rna ? GO:0000049 ... P14577 38811035
    811403 8s1u:N (3.4) BS01 rna ? GO:0003735 ... P20277 38811035
    811404 8s1u:O (3.4) BS01 rna ? GO:0005737 ... P46899 38811035
    811405 8s1u:O (3.4) BS02 rna ? GO:0005737 ... P46899 38811035
    811406 8s1u:P (3.4) BS01 rna ? GO:0003735 ... O31742 38811035
    811407 8s1u:Q (3.4) BS01 rna ? GO:0000027 ... P55873 38811035
    811408 8s1u:R (3.4) BS01 rna ? GO:0003735 ... P26908 38811035
    811409 8s1u:S (3.4) BS01 rna ? GO:0003735 ... P42060 38811035
    811410 8s1u:T (3.4) BS01 rna ? GO:0000027 ... P42924 38811035
    811411 8s1u:U (3.4) BS01 rna ? GO:0003677 ... P0CI78 38811035
    811412 8s1u:V (3.4) BS01 rna ? GO:0003723 ... P71020 38811035
    811413 8s1u:V (3.4) BS02 rna ? GO:0003723 ... P71020 38811035
    811414 8s1u:W (3.4) BS01 rna ? GO:0003735 ... P05657 38811035
    811415 8s1u:W (3.4) BS02 rna ? GO:0003735 ... P05657 38811035
    811416 8s1u:X (3.4) BS01 rna ? GO:0005840 ... P37807 38811035
    811417 8s1u:Y (3.4) BS01 rna ? GO:0005840 ... P12873 38811035
    811418 8s1u:Z (3.4) BS01 rna ? GO:0005840 ... P19947 38811035
    811419 8s1u:Z (3.4) BS02 rna ? GO:0005840 ... P19947 38811035
    811420 8s32:A (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811421 8s32:B (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811422 8s32:C (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811423 8s32:D (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811424 8s32:E (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811425 8s32:F (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811426 8s32:G (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811427 8s32:H (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811428 8s32:I (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811429 8s32:J (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811430 8s32:K (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811431 8s32:L (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811432 8s32:M (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811433 8s32:N (2.45) BS01 peptide 5.6.1.7 GO:0000287 ... P0A6F5 N/A
    811434 8s3e:A (2.39) BS01 CLR ? GO:0005216 ... Q9BG98 38553946
    811435 8s3e:A (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    811436 8s3e:A (2.39) BS03 CA ? GO:0005216 ... Q9BG98 38553946
    811437 8s3e:A (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    811438 8s3e:A (2.39) BS05 MG ? GO:0005216 ... Q9BG98 38553946
    811439 8s3e:B (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    811440 8s3e:B (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    811441 8s3e:B (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    811442 8s3e:B (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    811443 8s3e:B (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    811444 8s3e:C (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    811445 8s3e:C (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    811446 8s3e:C (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    811447 8s3e:C (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    811448 8s3e:C (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    811449 8s3e:D (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    811450 8s3e:D (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    811451 8s3e:D (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    811452 8s3e:D (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    811453 8s3e:D (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    811454 8s3x:A (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    811455 8s3x:B (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    811456 8s3x:C (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    811457 8s3x:D (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    811458 8s4g:C () BS01 ZN ? N/A N/A N/A
    811459 8s4g:C () BS02 ZN ? N/A N/A N/A
    811460 8s4g:C () BS03 ZN ? N/A N/A N/A
    811461 8s4g:K () BS01 peptide ? N/A N/A N/A
    811462 8s4g:N () BS01 ZN ? N/A N/A N/A
    811463 8s4g:Q () BS01 peptide ? N/A N/A N/A
    811464 8s4g:S () BS01 ZN ? N/A N/A N/A
    811465 8s4g:S () BS02 ZN ? N/A N/A N/A
    811466 8s4t:A (2.67) BS01 dna ? N/A D1LHE9 38811160
    811467 8s4t:B (2.67) BS01 dna ? N/A D1LHE9 38811160
    811468 8s4t:C (2.67) BS01 dna ? N/A D1LHE9 38811160
    811469 8s51:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811470 8s51:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811471 8s51:A (3.1) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811472 8s51:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811473 8s51:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811474 8s51:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811475 8s51:B (3.1) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811476 8s51:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811477 8s51:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811478 8s51:C (3.1) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    811479 8s51:E (3.1) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    811480 8s51:I (3.1) BS01 ZN ? GO:0000428 ... P60899 38604172
    811481 8s51:I (3.1) BS02 ZN ? GO:0000428 ... P60899 38604172
    811482 8s51:J (3.1) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38604172
    811483 8s51:L (3.1) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    811484 8s51:M (3.1) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    811485 8s51:M (3.1) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    811486 8s51:M (3.1) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    811487 8s51:M (3.1) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    811488 8s51:O (3.1) BS01 dna ? GO:0000785 ... P20226 38604172
    811489 8s51:O (3.1) BS02 dna ? GO:0000785 ... P20226 38604172
    811490 8s51:R (3.1) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    811491 8s51:R (3.1) BS02 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    811492 8s51:U (3.1) BS01 dna ? GO:0000979 ... P52655 38604172
    811493 8s51:U (3.1) BS02 dna ? GO:0000979 ... P52655 38604172
    811494 8s51:W (3.1) BS01 ZN ? GO:0001113 ... P29083 38604172
    811495 8s52:A (2.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811496 8s52:A (2.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811497 8s52:A (2.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811498 8s52:A (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811499 8s52:A (2.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811500 8s52:A (2.9) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811501 8s52:B (2.9) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811502 8s52:B (2.9) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811503 8s52:B (2.9) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811504 8s52:B (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811505 8s52:C (2.9) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    811506 8s52:E (2.9) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    811507 8s52:I (2.9) BS01 ZN ? GO:0000428 ... P60899 38604172
    811508 8s52:I (2.9) BS02 ZN ? GO:0000428 ... P60899 38604172
    811509 8s52:J (2.9) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    811510 8s52:L (2.9) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38604172
    811511 8s52:M (2.9) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    811512 8s52:M (2.9) BS02 rna 2.3.1.48 GO:0000776 ... Q00403 38604172
    811513 8s52:M (2.9) BS03 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    811514 8s52:M (2.9) BS04 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    811515 8s52:O (2.9) BS01 dna ? GO:0000785 ... P20226 38604172
    811516 8s52:O (2.9) BS02 dna ? GO:0000785 ... P20226 38604172
    811517 8s52:R (2.9) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38604172
    811518 8s52:W (2.9) BS01 ZN ? GO:0001113 ... P29083 38604172
    811519 8s54:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811520 8s54:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811521 8s54:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811522 8s54:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811523 8s54:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811524 8s54:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811525 8s54:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811526 8s54:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811527 8s54:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811528 8s54:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    811529 8s54:E (3.4) BS01 dna ? GO:0001054 ... I3LSI7 38604172
    811530 8s54:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    811531 8s54:I (3.4) BS02 ZN ? GO:0000428 ... P60899 38604172
    811532 8s54:J (3.4) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 38604172
    811533 8s54:W (3.4) BS01 ZN ? GO:0001113 ... P29083 38604172
    811534 8s55:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811535 8s55:A (3.4) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811536 8s55:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811537 8s55:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811538 8s55:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811539 8s55:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172
    811540 8s55:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811541 8s55:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811542 8s55:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38604172
    811543 8s55:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 38604172
    811544 8s55:I (3.4) BS01 ZN ? GO:0000428 ... P60899 38604172
    811545 8s55:I (3.4) BS02 ZN ? GO:0000428 ... P60899 38604172
    811546 8s55:J (3.4) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38604172
    811547 8s55:W (3.4) BS01 ZN ? GO:0001113 ... P29083 38604172
    811548 8s5b:A (1.8) BS01 A1H5E ? GO:0015768 ... A9CEY9 38567495
    811549 8s5h:A (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811550 8s5h:B (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811551 8s5h:C (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811552 8s5h:D (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811553 8s5h:E (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811554 8s5h:F (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811555 8s5h:G (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811556 8s5h:H (3.7) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811557 8s5i:A (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811558 8s5i:B (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811559 8s5i:C (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811560 8s5i:D (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811561 8s5i:E (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811562 8s5i:F (3.1) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811563 8s5j:A (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811564 8s5j:B (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811565 8s5j:C (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811566 8s5j:D (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811567 8s5j:E (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811568 8s5j:F (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811569 8s5j:G (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811570 8s5j:H (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811571 8s5j:I (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811572 8s5j:J (3.9) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811573 8s5k:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811574 8s5k:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811575 8s5k:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811576 8s5k:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811577 8s5k:E (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811578 8s5k:F (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811579 8s5k:G (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811580 8s5k:H (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811581 8s5l:A (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811582 8s5l:B (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811583 8s5l:B (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    811584 8s5l:C (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811585 8s5l:C (3.8) BS02 PLP 4.2.1.22 GO:0001958 ... P35520 38575566
    811586 8s5l:D (3.8) BS01 HEM 4.2.1.22 GO:0001958 ... P35520 38575566
    811587 8s5m:A (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811588 8s5m:B (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811589 8s5m:C (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811590 8s5m:D (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811591 8s5m:E (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811592 8s5m:E (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811593 8s5m:F (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811594 8s5m:G (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811595 8s5m:G (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811596 8s5m:H (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811597 8s5m:I (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811598 8s5m:J (4.0) BS01 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811599 8s5m:J (4.0) BS02 SAM 4.2.1.22 GO:0001958 ... P35520 38575566
    811600 8s5n:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 38604172

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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