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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    811201 8rxx:LX (2.97) BS01 rna ? GO:0002181 ... Q4Q1W6 38722744
    811202 8rxx:LX (2.97) BS02 rna ? GO:0002181 ... Q4Q1W6 38722744
    811203 8rxx:LY (2.97) BS01 rna ? GO:0003735 ... Q4Q504 38722744
    811204 8rxx:LY (2.97) BS02 rna ? GO:0003735 ... Q4Q504 38722744
    811205 8rxx:LZ (2.97) BS01 rna ? GO:0003735 ... Q4QGW7 38722744
    811206 8rxx:La (2.97) BS01 rna ? GO:0000463 ... Q4Q8V7 38722744
    811207 8rxx:La (2.97) BS02 rna ? GO:0000463 ... Q4Q8V7 38722744
    811208 8rxx:Lb (2.97) BS01 rna ? GO:0002181 ... Q4Q178 38722744
    811209 8rxx:Lb (2.97) BS02 rna ? GO:0002181 ... Q4Q178 38722744
    811210 8rxx:Lc (2.97) BS01 rna ? GO:0000463 ... Q4Q9H4 38722744
    811211 8rxx:Lc (2.97) BS02 rna ? GO:0000463 ... Q4Q9H4 38722744
    811212 8rxx:Ld (2.97) BS01 rna ? GO:0003723 ... E9AEK1 38722744
    811213 8rxx:Le (2.97) BS01 rna ? GO:0002181 ... E9AFF2 38722744
    811214 8rxx:Le (2.97) BS02 rna ? GO:0002181 ... E9AFF2 38722744
    811215 8rxx:Le (2.97) BS03 rna ? GO:0002181 ... E9AFF2 38722744
    811216 8rxx:Le (2.97) BS04 rna ? GO:0002181 ... E9AFF2 38722744
    811217 8rxx:Lf (2.97) BS01 rna ? GO:0003735 ... Q4QC11 38722744
    811218 8rxx:Lg (2.97) BS01 rna ? GO:0002181 ... Q4QHL3 38722744
    811219 8rxx:Lg (2.97) BS02 rna ? GO:0002181 ... Q4QHL3 38722744
    811220 8rxx:Lg (2.97) BS03 rna ? GO:0002181 ... Q4QHL3 38722744
    811221 8rxx:Lh (2.97) BS01 rna ? GO:0003735 ... Q4QDP9 38722744
    811222 8rxx:Lh (2.97) BS02 rna ? GO:0003735 ... Q4QDP9 38722744
    811223 8rxx:Lh (2.97) BS03 rna ? GO:0003735 ... Q4QDP9 38722744
    811224 8rxx:Li (2.97) BS01 rna ? GO:0002181 ... Q4QCE1 38722744
    811225 8rxx:Li (2.97) BS02 rna ? GO:0002181 ... Q4QCE1 38722744
    811226 8rxx:Lj (2.97) BS01 rna ? GO:0003723 ... E9AEH2 38722744
    811227 8rxx:Lj (2.97) BS02 rna ? GO:0003723 ... E9AEH2 38722744
    811228 8rxx:Lj (2.97) BS03 rna ? GO:0003723 ... E9AEH2 38722744
    811229 8rxx:Lk (2.97) BS01 rna ? GO:0003735 ... Q4Q8X0 38722744
    811230 8rxx:Lk (2.97) BS02 rna ? GO:0003735 ... Q4Q8X0 38722744
    811231 8rxx:Lk (2.97) BS03 rna ? GO:0003735 ... Q4Q8X0 38722744
    811232 8rxx:Ll (2.97) BS01 rna ? GO:0003735 ... Q4QEQ0 38722744
    811233 8rxx:Ll (2.97) BS02 rna ? GO:0003735 ... Q4QEQ0 38722744
    811234 8rxx:Ll (2.97) BS03 rna ? GO:0003735 ... Q4QEQ0 38722744
    811235 8rxx:Lm (2.97) BS01 rna ? GO:0003735 ... P69201 38722744
    811236 8rxx:Lm (2.97) BS02 rna ? GO:0003735 ... P69201 38722744
    811237 8rxx:Lm (2.97) BS03 rna ? GO:0003735 ... P69201 38722744
    811238 8rxx:Lm (2.97) BS04 ZN ? GO:0003735 ... P69201 38722744
    811239 8rxx:Lo (2.97) BS01 rna ? GO:0003735 ... Q4QC01 38722744
    811240 8rxx:Lo (2.97) BS02 rna ? GO:0003735 ... Q4QC01 38722744
    811241 8rxx:Lo (2.97) BS03 rna ? GO:0003735 ... Q4QC01 38722744
    811242 8rxx:Lp (2.97) BS01 rna ? GO:0003735 ... Q4Q3L3 38722744
    811243 8rxx:Lp (2.97) BS02 rna ? GO:0003735 ... Q4Q3L3 38722744
    811244 8rxx:Lp (2.97) BS03 rna ? GO:0003735 ... Q4Q3L3 38722744
    811245 8rxx:SA (2.97) BS01 rna ? GO:0003735 ... Q4FX73 38722744
    811246 8rxx:SB (2.97) BS01 rna ? GO:0000028 ... Q4Q0Q0 38722744
    811247 8rxx:SC (2.97) BS01 rna ? GO:0003723 ... Q4Q4A0 38722744
    811248 8rxx:SD (2.97) BS01 rna ? GO:0003723 ... Q4QIM3 38722744
    811249 8rxx:SE (2.97) BS01 rna ? GO:0003723 ... Q4QG31 38722744
    811250 8rxx:SF (2.97) BS01 rna ? GO:0003723 ... Q4QDL5 38722744
    811251 8rxx:SG (2.97) BS01 rna ? GO:0003735 ... Q9NE83 38722744
    811252 8rxx:SH (2.97) BS01 rna ? GO:0000028 ... Q868B1 38722744
    811253 8rxx:SI (2.97) BS01 rna ? GO:0003735 ... E9AC32 38722744
    811254 8rxx:SJ (2.97) BS01 rna ? GO:0003735 ... Q4QGW3 38722744
    811255 8rxx:SK (2.97) BS01 rna ? GO:0000462 ... P25204 38722744
    811256 8rxx:SK (2.97) BS02 rna ? GO:0000462 ... P25204 38722744
    811257 8rxx:SK (2.97) BS03 rna ? GO:0000462 ... P25204 38722744
    811258 8rxx:SK (2.97) BS04 MG ? GO:0000462 ... P25204 38722744
    811259 8rxx:SL (2.97) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    811260 8rxx:SM (2.97) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    811261 8rxx:SN (2.97) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    811262 8rxx:SO (2.97) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    811263 8rxx:SP (2.97) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    811264 8rxx:SQ (2.97) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    811265 8rxx:SR (2.97) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    811266 8rxx:SS (2.97) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    811267 8rxx:SS (2.97) BS02 ZN ? GO:0002181 ... Q4Q817 38722744
    811268 8rxx:ST (2.97) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    811269 8rxx:ST (2.97) BS02 rna ? GO:0003735 ... Q4Q3M1 38722744
    811270 8rxx:ST (2.97) BS03 rna ? GO:0003735 ... Q4Q3M1 38722744
    811271 8rxx:SV (2.97) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    811272 8rxx:SW (2.97) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    811273 8rxx:SX (2.97) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    811274 8rxx:SY (2.97) BS01 rna ? GO:0000447 ... Q4QH01 38722744
    811275 8rxx:SZ (2.97) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    811276 8rxx:Sa (2.97) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    811277 8rxx:Sb (2.97) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    811278 8rxx:Sb (2.97) BS02 ZN ? GO:0003729 ... Q4Q8L6 38722744
    811279 8rxx:Sc (2.97) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    811280 8rxx:Sd (2.97) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    811281 8rxx:Se (2.97) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    811282 8rxx:Sf (2.97) BS01 rna ? GO:0003735 ... Q4QFK7 38722744
    811283 8rxx:Sh (2.97) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    811284 8ryk:A (1.8) BS01 peptide ? N/A P01584 38728572
    811285 8ryk:B (1.8) BS01 peptide ? N/A P01584 38728572
    811286 8ryk:B (1.8) BS02 peptide ? N/A P01584 38728572
    811287 8rzb:A (1.836) BS01 A1H4A ? N/A P01584 38728572
    811288 8rzb:A (1.836) BS02 A1H4A ? N/A P01584 38728572
    811289 8rzb:B (1.836) BS01 A1H4A ? N/A P01584 38728572
    811290 8rzb:B (1.836) BS02 A1H4A ? N/A P01584 38728572
    811291 8rzb:C (1.836) BS01 A1H4A ? N/A P01584 38728572
    811292 8rzb:C (1.836) BS02 A1H4A ? N/A P01584 38728572
    811293 8rzb:D (1.836) BS01 A1H4A ? N/A P01584 38728572
    811294 8rzb:D (1.836) BS02 A1H4A ? N/A P01584 38728572
    811295 8rzc:A (2.35) BS01 A1H4D 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    811296 8rzc:B (2.35) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    811297 8rzc:B (2.35) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    811298 8rzd:A (2.1) BS01 A1H4C 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    811299 8rzd:B (2.1) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    811300 8rzd:B (2.1) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    811301 8rze:A (2.0) BS01 A1H4B 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    811302 8rze:B (2.0) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    811303 8rze:B (2.0) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0003723 ... P0DTC1 N/A
    811304 8rzl:A (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    811305 8rzl:A (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    811306 8rzl:B (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    811307 8rzl:B (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    811308 8rzl:C (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    811309 8rzl:C (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    811310 8rzl:D (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    811311 8rzl:D (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    811312 8rzl:E (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    811313 8rzl:E (2.65) BS02 MAN ? N/A Q4JBK8 N/A
    811314 8rzv:A (1.51) BS01 dna ? GO:0003676 ... P09651 N/A
    811315 8rzw:A (2.02) BS01 A1H4N 3.1.3.48 GO:0004725 ... Q06124 38462716
    811316 8rzw:B (2.02) BS01 A1H4N 3.1.3.48 GO:0004725 ... Q06124 38462716
    811317 8rzy:A (1.91) BS01 A1H4L 3.1.3.48 GO:0004725 ... Q06124 38462716
    811318 8rzy:B (1.91) BS01 A1H4L 3.1.3.48 GO:0004725 ... Q06124 38462716
    811319 8s01:A (2.17) BS01 A1H4J 3.1.3.48 GO:0004725 ... Q06124 38462716
    811320 8s01:B (2.17) BS01 A1H4J 3.1.3.48 GO:0004725 ... Q06124 38462716
    811321 8s03:A (-1.00) BS01 CA ? N/A Q02817 38733585
    811322 8s04:A (1.89) BS01 A1H4I 3.1.3.48 GO:0004725 ... Q06124 38462716
    811323 8s04:B (1.89) BS01 A1H4I 3.1.3.48 GO:0004725 ... Q06124 38462716
    811324 8s06:A (2.19) BS01 A1H4M 3.1.3.48 GO:0004725 ... Q06124 38462716
    811325 8s06:B (2.19) BS01 A1H4M 3.1.3.48 GO:0004725 ... Q06124 38462716
    811326 8s07:A (1.83) BS01 A1H4K 3.1.3.48 GO:0004725 ... Q06124 38462716
    811327 8s07:B (1.83) BS01 A1H4K 3.1.3.48 GO:0004725 ... Q06124 38462716
    811328 8s0h:A (1.99) BS01 A1H4Q 3.1.3.48 GO:0004725 ... Q06124 38462716
    811329 8s0h:B (1.99) BS01 A1H4Q 3.1.3.48 GO:0004725 ... Q06124 38462716
    811330 8s0i:A (1.929) BS01 A1H4P 3.1.3.48 GO:0004725 ... Q06124 38462716
    811331 8s0i:B (1.929) BS01 A1H4P 3.1.3.48 GO:0004725 ... Q06124 38462716
    811332 8s0j:A (1.89) BS01 A1H4R 3.1.3.48 GO:0004725 ... Q06124 38462716
    811333 8s0j:B (1.89) BS01 A1H4R 3.1.3.48 GO:0004725 ... Q06124 38462716
    811334 8s0k:A (1.84) BS01 A1H4S 3.1.3.48 GO:0004725 ... Q06124 38462716
    811335 8s0k:B (1.84) BS01 A1H4S 3.1.3.48 GO:0004725 ... Q06124 38462716
    811336 8s0o:A (1.834) BS01 A1H4G 3.1.3.48 GO:0004725 ... Q06124 38462716
    811337 8s0o:B (1.834) BS01 A1H4G 3.1.3.48 GO:0004725 ... Q06124 38462716
    811338 8s0p:A (2.0) BS01 A1H4O 3.1.3.48 GO:0004725 ... Q06124 38462716
    811339 8s0p:B (2.0) BS01 A1H4O 3.1.3.48 GO:0004725 ... Q06124 38462716
    811340 8s0q:A (1.872) BS01 A1H4T 3.1.3.48 GO:0004725 ... Q06124 38462716
    811341 8s0q:B (1.872) BS01 A1H4T 3.1.3.48 GO:0004725 ... Q06124 38462716
    811342 8s0s:A (1.94) BS01 A1H4H 3.1.3.48 GO:0004725 ... Q06124 38462716
    811343 8s0s:B (1.94) BS01 A1H4H 3.1.3.48 GO:0004725 ... Q06124 38462716
    811344 8s1k:A (1.22) BS01 A1H4Y ? GO:0005324 ... P15090 N/A
    811345 8s1p:0 (1.96) BS01 rna ? GO:0003735 ... O34687 38811035
    811346 8s1p:0 (1.96) BS02 ZN ? GO:0003735 ... O34687 38811035
    811347 8s1p:1 (1.96) BS01 rna ? GO:0005737 ... P56849 38811035
    811348 8s1p:1 (1.96) BS02 ZN ? GO:0005737 ... P56849 38811035
    811349 8s1p:2 (1.96) BS01 rna ? GO:0005840 ... P05647 38811035
    811350 8s1p:3 (1.96) BS01 rna ? GO:0003735 ... P55874 38811035
    811351 8s1p:4 (1.96) BS01 rna ? GO:0005737 ... P20278 38811035
    811352 8s1p:4 (1.96) BS02 ZN ? GO:0005737 ... P20278 38811035
    811353 8s1p:6 (1.96) BS01 rna ? GO:0005840 ... Q03223 38811035
    811354 8s1p:6 (1.96) BS02 ZN ? GO:0005840 ... Q03223 38811035
    811355 8s1p:C (1.96) BS01 rna ? GO:0002181 ... P42919 38811035
    811356 8s1p:D (1.96) BS01 rna ? GO:0003735 ... P42920 38811035
    811357 8s1p:E (1.96) BS01 rna ? GO:0003735 ... P42921 38811035
    811358 8s1p:F (1.96) BS01 rna ? GO:0000049 ... P12877 38811035
    811359 8s1p:F (1.96) BS02 rna ? GO:0000049 ... P12877 38811035
    811360 8s1p:F (1.96) BS03 rna ? GO:0000049 ... P12877 38811035
    811361 8s1p:G (1.96) BS01 rna ? GO:0002181 ... P46898 38811035
    811362 8s1p:J (1.96) BS01 rna ? GO:0003729 ... P70974 38811035
    811363 8s1p:K (1.96) BS01 rna ? GO:0003735 ... P12875 38811035
    811364 8s1p:L (1.96) BS01 rna ? GO:0003735 ... P19946 38811035
    811365 8s1p:M (1.96) BS01 rna ? GO:0000049 ... P14577 38811035
    811366 8s1p:M (1.96) BS02 rna ? GO:0000049 ... P14577 38811035
    811367 8s1p:N (1.96) BS01 rna ? GO:0003735 ... P20277 38811035
    811368 8s1p:N (1.96) BS02 MG ? GO:0003735 ... P20277 38811035
    811369 8s1p:O (1.96) BS01 rna ? GO:0005737 ... P46899 38811035
    811370 8s1p:O (1.96) BS02 rna ? GO:0005737 ... P46899 38811035
    811371 8s1p:P (1.96) BS01 rna ? GO:0003735 ... O31742 38811035
    811372 8s1p:Q (1.96) BS01 rna ? GO:0000027 ... P55873 38811035
    811373 8s1p:R (1.96) BS01 rna ? GO:0003735 ... P26908 38811035
    811374 8s1p:S (1.96) BS01 rna ? GO:0003735 ... P42060 38811035
    811375 8s1p:T (1.96) BS01 rna ? GO:0000027 ... P42924 38811035
    811376 8s1p:U (1.96) BS01 rna ? GO:0003677 ... P0CI78 38811035
    811377 8s1p:V (1.96) BS01 rna ? GO:0003723 ... P71020 38811035
    811378 8s1p:W (1.96) BS01 rna ? GO:0003735 ... P05657 38811035
    811379 8s1p:W (1.96) BS02 rna ? GO:0003735 ... P05657 38811035
    811380 8s1p:X (1.96) BS01 rna ? GO:0005840 ... P37807 38811035
    811381 8s1p:Y (1.96) BS01 rna ? GO:0005840 ... P12873 38811035
    811382 8s1p:Z (1.96) BS01 rna ? GO:0005840 ... P19947 38811035
    811383 8s1p:Z (1.96) BS02 rna ? GO:0005840 ... P19947 38811035
    811384 8s1u:0 (3.4) BS01 rna ? GO:0003735 ... O34687 38811035
    811385 8s1u:1 (3.4) BS01 rna ? GO:0005737 ... P56849 38811035
    811386 8s1u:2 (3.4) BS01 rna ? GO:0005840 ... P05647 38811035
    811387 8s1u:3 (3.4) BS01 rna ? GO:0003735 ... P55874 38811035
    811388 8s1u:4 (3.4) BS01 rna ? GO:0005737 ... P20278 38811035
    811389 8s1u:6 (3.4) BS01 rna ? GO:0005840 ... Q03223 38811035
    811390 8s1u:C (3.4) BS01 rna ? GO:0002181 ... P42919 38811035
    811391 8s1u:D (3.4) BS01 rna ? GO:0003735 ... P42920 38811035
    811392 8s1u:E (3.4) BS01 rna ? GO:0003735 ... P42921 38811035
    811393 8s1u:F (3.4) BS01 rna ? GO:0000049 ... P12877 38811035
    811394 8s1u:F (3.4) BS02 rna ? GO:0000049 ... P12877 38811035
    811395 8s1u:F (3.4) BS03 rna ? GO:0000049 ... P12877 38811035
    811396 8s1u:G (3.4) BS01 rna ? GO:0002181 ... P46898 38811035
    811397 8s1u:H (3.4) BS01 rna ? GO:0000049 ... O34693 38811035
    811398 8s1u:J (3.4) BS01 rna ? GO:0003729 ... P70974 38811035
    811399 8s1u:K (3.4) BS01 rna ? GO:0003735 ... P12875 38811035
    811400 8s1u:L (3.4) BS01 rna ? GO:0003735 ... P19946 38811035
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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