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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    811001 8rxh:LL (2.93) BS01 rna ? GO:0003735 ... E9AFK0 38722744
    811002 8rxh:LL (2.93) BS02 rna ? GO:0003735 ... E9AFK0 38722744
    811003 8rxh:LM (2.93) BS01 rna ? GO:0002181 ... Q4Q6S3 38722744
    811004 8rxh:LM (2.93) BS02 rna ? GO:0002181 ... Q4Q6S3 38722744
    811005 8rxh:LM (2.93) BS03 rna ? GO:0002181 ... Q4Q6S3 38722744
    811006 8rxh:LN (2.93) BS01 rna ? GO:0000027 ... O97213 38722744
    811007 8rxh:LN (2.93) BS02 rna ? GO:0000027 ... O97213 38722744
    811008 8rxh:LN (2.93) BS03 rna ? GO:0000027 ... O97213 38722744
    811009 8rxh:LO (2.93) BS01 rna ? GO:0000027 ... E9AF09 38722744
    811010 8rxh:LO (2.93) BS02 rna ? GO:0000027 ... E9AF09 38722744
    811011 8rxh:LO (2.93) BS03 rna ? GO:0000027 ... E9AF09 38722744
    811012 8rxh:LP (2.93) BS01 rna ? GO:0003723 ... Q4QG98 38722744
    811013 8rxh:LP (2.93) BS02 rna ? GO:0003723 ... Q4QG98 38722744
    811014 8rxh:LQ (2.93) BS01 rna ? GO:0003723 ... Q4QJ37 38722744
    811015 8rxh:LQ (2.93) BS02 rna ? GO:0003723 ... Q4QJ37 38722744
    811016 8rxh:LQ (2.93) BS03 rna ? GO:0003723 ... Q4QJ37 38722744
    811017 8rxh:LQ (2.93) BS04 rna ? GO:0003723 ... Q4QJ37 38722744
    811018 8rxh:LQ (2.93) BS05 rna ? GO:0003723 ... Q4QJ37 38722744
    811019 8rxh:LR (2.93) BS01 rna ? GO:0003735 ... Q4Q5J4 38722744
    811020 8rxh:LR (2.93) BS02 rna ? GO:0003735 ... Q4Q5J4 38722744
    811021 8rxh:LR (2.93) BS03 rna ? GO:0003735 ... Q4Q5J4 38722744
    811022 8rxh:LS (2.93) BS01 rna ? GO:0003735 ... Q4QEX4 38722744
    811023 8rxh:LS (2.93) BS02 rna ? GO:0003735 ... Q4QEX4 38722744
    811024 8rxh:LS (2.93) BS03 rna ? GO:0003735 ... Q4QEX4 38722744
    811025 8rxh:LT (2.93) BS01 rna ? GO:0002181 ... Q4QAX6 38722744
    811026 8rxh:LT (2.93) BS02 rna ? GO:0002181 ... Q4QAX6 38722744
    811027 8rxh:LT (2.93) BS03 rna ? GO:0002181 ... Q4QAX6 38722744
    811028 8rxh:LT (2.93) BS04 rna ? GO:0002181 ... Q4QAX6 38722744
    811029 8rxh:LT (2.93) BS05 rna ? GO:0002181 ... Q4QAX6 38722744
    811030 8rxh:LU (2.93) BS01 rna ? GO:0002181 ... Q4Q0X2 38722744
    811031 8rxh:LU (2.93) BS02 rna ? GO:0002181 ... Q4Q0X2 38722744
    811032 8rxh:LU (2.93) BS03 rna ? GO:0002181 ... Q4Q0X2 38722744
    811033 8rxh:LV (2.93) BS01 rna ? GO:0000027 ... Q4QJ20 38722744
    811034 8rxh:LV (2.93) BS02 rna ? GO:0000027 ... Q4QJ20 38722744
    811035 8rxh:LV (2.93) BS03 rna ? GO:0000027 ... Q4QJ20 38722744
    811036 8rxh:LW (2.93) BS01 rna ? GO:0002181 ... Q4QAC5 38722744
    811037 8rxh:LW (2.93) BS02 rna ? GO:0002181 ... Q4QAC5 38722744
    811038 8rxh:LW (2.93) BS03 MG ? GO:0002181 ... Q4QAC5 38722744
    811039 8rxh:LX (2.93) BS01 rna ? GO:0002181 ... Q4Q1W6 38722744
    811040 8rxh:LX (2.93) BS02 rna ? GO:0002181 ... Q4Q1W6 38722744
    811041 8rxh:LX (2.93) BS03 rna ? GO:0002181 ... Q4Q1W6 38722744
    811042 8rxh:LY (2.93) BS01 rna ? GO:0003735 ... Q4Q504 38722744
    811043 8rxh:LY (2.93) BS02 rna ? GO:0003735 ... Q4Q504 38722744
    811044 8rxh:LZ (2.93) BS01 rna ? GO:0003735 ... Q4QGW7 38722744
    811045 8rxh:La (2.93) BS01 rna ? GO:0000463 ... Q4Q8V7 38722744
    811046 8rxh:La (2.93) BS02 rna ? GO:0000463 ... Q4Q8V7 38722744
    811047 8rxh:Lb (2.93) BS01 rna ? GO:0002181 ... Q4Q178 38722744
    811048 8rxh:Lb (2.93) BS02 rna ? GO:0002181 ... Q4Q178 38722744
    811049 8rxh:Lc (2.93) BS01 rna ? GO:0000463 ... Q4Q9H4 38722744
    811050 8rxh:Lc (2.93) BS02 rna ? GO:0000463 ... Q4Q9H4 38722744
    811051 8rxh:Ld (2.93) BS01 rna ? GO:0003723 ... E9AEK1 38722744
    811052 8rxh:Ld (2.93) BS02 rna ? GO:0003723 ... E9AEK1 38722744
    811053 8rxh:Le (2.93) BS01 rna ? GO:0002181 ... E9AFF2 38722744
    811054 8rxh:Le (2.93) BS02 rna ? GO:0002181 ... E9AFF2 38722744
    811055 8rxh:Le (2.93) BS03 rna ? GO:0002181 ... E9AFF2 38722744
    811056 8rxh:Le (2.93) BS04 rna ? GO:0002181 ... E9AFF2 38722744
    811057 8rxh:Lf (2.93) BS01 rna ? GO:0003735 ... Q4QC11 38722744
    811058 8rxh:Lf (2.93) BS02 MG ? GO:0003735 ... Q4QC11 38722744
    811059 8rxh:Lg (2.93) BS01 rna ? GO:0002181 ... Q4QHL3 38722744
    811060 8rxh:Lg (2.93) BS02 rna ? GO:0002181 ... Q4QHL3 38722744
    811061 8rxh:Lg (2.93) BS03 rna ? GO:0002181 ... Q4QHL3 38722744
    811062 8rxh:Lh (2.93) BS01 rna ? GO:0003735 ... Q4QDP9 38722744
    811063 8rxh:Lh (2.93) BS02 rna ? GO:0003735 ... Q4QDP9 38722744
    811064 8rxh:Lh (2.93) BS03 rna ? GO:0003735 ... Q4QDP9 38722744
    811065 8rxh:Li (2.93) BS01 rna ? GO:0002181 ... Q4QCE1 38722744
    811066 8rxh:Li (2.93) BS02 rna ? GO:0002181 ... Q4QCE1 38722744
    811067 8rxh:Lj (2.93) BS01 rna ? GO:0003723 ... E9AEH2 38722744
    811068 8rxh:Lj (2.93) BS02 rna ? GO:0003723 ... E9AEH2 38722744
    811069 8rxh:Lj (2.93) BS03 rna ? GO:0003723 ... E9AEH2 38722744
    811070 8rxh:Lk (2.93) BS01 rna ? GO:0003735 ... Q4Q8X0 38722744
    811071 8rxh:Lk (2.93) BS02 rna ? GO:0003735 ... Q4Q8X0 38722744
    811072 8rxh:Lk (2.93) BS03 rna ? GO:0003735 ... Q4Q8X0 38722744
    811073 8rxh:Ll (2.93) BS01 rna ? GO:0003735 ... Q4QEQ0 38722744
    811074 8rxh:Ll (2.93) BS02 rna ? GO:0003735 ... Q4QEQ0 38722744
    811075 8rxh:Ll (2.93) BS03 rna ? GO:0003735 ... Q4QEQ0 38722744
    811076 8rxh:Lm (2.93) BS01 rna ? GO:0003735 ... P69201 38722744
    811077 8rxh:Lm (2.93) BS02 rna ? GO:0003735 ... P69201 38722744
    811078 8rxh:Lm (2.93) BS03 rna ? GO:0003735 ... P69201 38722744
    811079 8rxh:Lo (2.93) BS01 rna ? GO:0003735 ... Q4QC01 38722744
    811080 8rxh:Lo (2.93) BS02 rna ? GO:0003735 ... Q4QC01 38722744
    811081 8rxh:Lo (2.93) BS03 rna ? GO:0003735 ... Q4QC01 38722744
    811082 8rxh:Lp (2.93) BS01 rna ? GO:0003735 ... Q4Q3L3 38722744
    811083 8rxh:Lp (2.93) BS02 rna ? GO:0003735 ... Q4Q3L3 38722744
    811084 8rxh:Lp (2.93) BS03 rna ? GO:0003735 ... Q4Q3L3 38722744
    811085 8rxh:Lp (2.93) BS04 ZN ? GO:0003735 ... Q4Q3L3 38722744
    811086 8rxh:SA (2.93) BS01 rna ? GO:0003735 ... Q4FX73 38722744
    811087 8rxh:SB (2.93) BS01 rna ? GO:0000028 ... Q4Q0Q0 38722744
    811088 8rxh:SC (2.93) BS01 rna ? GO:0003723 ... Q4Q4A0 38722744
    811089 8rxh:SD (2.93) BS01 rna ? GO:0003723 ... Q4QIM3 38722744
    811090 8rxh:SE (2.93) BS01 rna ? GO:0003723 ... Q4QG31 38722744
    811091 8rxh:SF (2.93) BS01 rna ? GO:0003723 ... Q4QDL5 38722744
    811092 8rxh:SG (2.93) BS01 rna ? GO:0003735 ... Q9NE83 38722744
    811093 8rxh:SH (2.93) BS01 rna ? GO:0000028 ... Q868B1 38722744
    811094 8rxh:SH (2.93) BS02 rna ? GO:0000028 ... Q868B1 38722744
    811095 8rxh:SI (2.93) BS01 rna ? GO:0003735 ... E9AC32 38722744
    811096 8rxh:SJ (2.93) BS01 rna ? GO:0003735 ... Q4QGW3 38722744
    811097 8rxh:SK (2.93) BS01 rna ? GO:0000462 ... P25204 38722744
    811098 8rxh:SK (2.93) BS02 rna ? GO:0000462 ... P25204 38722744
    811099 8rxh:SK (2.93) BS03 rna ? GO:0000462 ... P25204 38722744
    811100 8rxh:SL (2.93) BS01 rna ? GO:0000462 ... Q4Q9A5 38722744
    811101 8rxh:SM (2.93) BS01 rna ? GO:0003735 ... Q4Q8G4 38722744
    811102 8rxh:SN (2.93) BS01 rna ? GO:0003723 ... Q4Q1X7 38722744
    811103 8rxh:SO (2.93) BS01 rna ? GO:0000028 ... Q4Q8H1 38722744
    811104 8rxh:SP (2.93) BS01 rna ? GO:0003735 ... Q4QC89 38722744
    811105 8rxh:SQ (2.93) BS01 rna ? GO:0003735 ... Q4QG97 38722744
    811106 8rxh:SR (2.93) BS01 rna ? GO:0003676 ... Q4Q1Y3 38722744
    811107 8rxh:SS (2.93) BS01 rna ? GO:0002181 ... Q4Q817 38722744
    811108 8rxh:ST (2.93) BS01 rna ? GO:0003735 ... Q4Q3M1 38722744
    811109 8rxh:ST (2.93) BS02 rna ? GO:0003735 ... Q4Q3M1 38722744
    811110 8rxh:SV (2.93) BS01 rna ? GO:0003735 ... Q4Q806 38722744
    811111 8rxh:SW (2.93) BS01 rna ? GO:0000028 ... Q4QBV0 38722744
    811112 8rxh:SX (2.93) BS01 rna ? GO:0000028 ... E9AEE8 38722744
    811113 8rxh:SX (2.93) BS02 MG ? GO:0000028 ... E9AEE8 38722744
    811114 8rxh:SY (2.93) BS01 rna ? GO:0000447 ... Q4QH01 38722744
    811115 8rxh:SZ (2.93) BS01 rna ? GO:0003735 ... Q4Q1D2 38722744
    811116 8rxh:Sa (2.93) BS01 rna ? GO:0003735 ... Q4Q9X4 38722744
    811117 8rxh:Sa (2.93) BS02 rna ? GO:0003735 ... Q4Q9X4 38722744
    811118 8rxh:Sa (2.93) BS03 rna ? GO:0003735 ... Q4Q9X4 38722744
    811119 8rxh:Sb (2.93) BS01 rna ? GO:0003729 ... Q4Q8L6 38722744
    811120 8rxh:Sc (2.93) BS01 rna ? GO:0000028 ... Q4Q140 38722744
    811121 8rxh:Sd (2.93) BS01 rna ? GO:0000028 ... Q4Q931 38722744
    811122 8rxh:Se (2.93) BS01 rna ? GO:0003735 ... Q4Q7P0 38722744
    811123 8rxh:Sf (2.93) BS01 rna ? GO:0003735 ... Q4QFK7 38722744
    811124 8rxh:Sg (2.93) BS01 rna ? GO:0005080 ... Q4Q7Y7 38722744
    811125 8rxh:Sh (2.93) BS01 rna ? GO:0003676 ... Q4Q5K7 38722744
    811126 8rxn:A (1.0) BS01 FE ? GO:0005506 ... P00269 1616692
    811127 8rxr:A (2.06) BS01 A1H4E 2.7.1.137 GO:0016301 ... Q8NEB9 38506049
    811128 8rxr:B (2.06) BS01 A1H4E 2.7.1.137 GO:0016301 ... Q8NEB9 38506049
    811129 8rxx:LA (2.97) BS01 rna ? GO:0002181 ... Q4FWX5 38722744
    811130 8rxx:LA (2.97) BS02 rna ? GO:0002181 ... Q4FWX5 38722744
    811131 8rxx:LA (2.97) BS03 rna ? GO:0002181 ... Q4FWX5 38722744
    811132 8rxx:LA (2.97) BS04 rna ? GO:0002181 ... Q4FWX5 38722744
    811133 8rxx:LB (2.97) BS01 rna ? GO:0003723 ... Q4Q2Q6 38722744
    811134 8rxx:LB (2.97) BS02 rna ? GO:0003723 ... Q4Q2Q6 38722744
    811135 8rxx:LB (2.97) BS03 rna ? GO:0003723 ... Q4Q2Q6 38722744
    811136 8rxx:LB (2.97) BS04 rna ? GO:0003723 ... Q4Q2Q6 38722744
    811137 8rxx:LC (2.97) BS01 rna ? GO:0003723 ... E9ADW5 38722744
    811138 8rxx:LC (2.97) BS02 rna ? GO:0003723 ... E9ADW5 38722744
    811139 8rxx:LC (2.97) BS03 rna ? GO:0003723 ... E9ADW5 38722744
    811140 8rxx:LD (2.97) BS01 rna ? GO:0003723 ... P48157 38722744
    811141 8rxx:LD (2.97) BS02 rna ? GO:0003723 ... P48157 38722744
    811142 8rxx:LD (2.97) BS03 rna ? GO:0003723 ... P48157 38722744
    811143 8rxx:LE (2.97) BS01 rna ? GO:0002181 ... Q4QC91 38722744
    811144 8rxx:LE (2.97) BS02 rna ? GO:0002181 ... Q4QC91 38722744
    811145 8rxx:LE (2.97) BS03 rna ? GO:0002181 ... Q4QC91 38722744
    811146 8rxx:LE (2.97) BS04 rna ? GO:0002181 ... Q4QC91 38722744
    811147 8rxx:LF (2.97) BS01 rna ? GO:0000027 ... Q4Q4D3 38722744
    811148 8rxx:LF (2.97) BS02 rna ? GO:0000027 ... Q4Q4D3 38722744
    811149 8rxx:LG (2.97) BS01 rna ? GO:0000470 ... Q4QIP1 38722744
    811150 8rxx:LG (2.97) BS02 rna ? GO:0000470 ... Q4QIP1 38722744
    811151 8rxx:LG (2.97) BS03 rna ? GO:0000470 ... Q4QIP1 38722744
    811152 8rxx:LH (2.97) BS01 rna ? GO:0003729 ... Q4QFG2 38722744
    811153 8rxx:LH (2.97) BS02 rna ? GO:0003729 ... Q4QFG2 38722744
    811154 8rxx:LH (2.97) BS03 rna ? GO:0003729 ... Q4QFG2 38722744
    811155 8rxx:LH (2.97) BS04 rna ? GO:0003729 ... Q4QFG2 38722744
    811156 8rxx:LI (2.97) BS01 rna ? GO:0003723 ... E9AEA8 38722744
    811157 8rxx:LI (2.97) BS02 rna ? GO:0003723 ... E9AEA8 38722744
    811158 8rxx:LI (2.97) BS03 rna ? GO:0003723 ... E9AEA8 38722744
    811159 8rxx:LJ (2.97) BS01 rna ? GO:0003735 ... E9AFK3 38722744
    811160 8rxx:LJ (2.97) BS02 rna ? GO:0003735 ... E9AFK3 38722744
    811161 8rxx:LK (2.97) BS01 rna ? GO:0003723 ... Q4QBJ1 38722744
    811162 8rxx:LK (2.97) BS02 rna ? GO:0003723 ... Q4QBJ1 38722744
    811163 8rxx:LK (2.97) BS03 rna ? GO:0003723 ... Q4QBJ1 38722744
    811164 8rxx:LL (2.97) BS01 rna ? GO:0003735 ... E9AFK0 38722744
    811165 8rxx:LL (2.97) BS02 rna ? GO:0003735 ... E9AFK0 38722744
    811166 8rxx:LM (2.97) BS01 rna ? GO:0002181 ... Q4Q6S3 38722744
    811167 8rxx:LM (2.97) BS02 rna ? GO:0002181 ... Q4Q6S3 38722744
    811168 8rxx:LM (2.97) BS03 rna ? GO:0002181 ... Q4Q6S3 38722744
    811169 8rxx:LN (2.97) BS01 rna ? GO:0000027 ... O97213 38722744
    811170 8rxx:LN (2.97) BS02 rna ? GO:0000027 ... O97213 38722744
    811171 8rxx:LN (2.97) BS03 rna ? GO:0000027 ... O97213 38722744
    811172 8rxx:LO (2.97) BS01 rna ? GO:0000027 ... E9AF09 38722744
    811173 8rxx:LO (2.97) BS02 rna ? GO:0000027 ... E9AF09 38722744
    811174 8rxx:LO (2.97) BS03 rna ? GO:0000027 ... E9AF09 38722744
    811175 8rxx:LP (2.97) BS01 rna ? GO:0003723 ... Q4QG98 38722744
    811176 8rxx:LP (2.97) BS02 rna ? GO:0003723 ... Q4QG98 38722744
    811177 8rxx:LQ (2.97) BS01 rna ? GO:0003723 ... Q4QJ37 38722744
    811178 8rxx:LQ (2.97) BS02 rna ? GO:0003723 ... Q4QJ37 38722744
    811179 8rxx:LQ (2.97) BS03 rna ? GO:0003723 ... Q4QJ37 38722744
    811180 8rxx:LQ (2.97) BS04 rna ? GO:0003723 ... Q4QJ37 38722744
    811181 8rxx:LQ (2.97) BS05 rna ? GO:0003723 ... Q4QJ37 38722744
    811182 8rxx:LR (2.97) BS01 rna ? GO:0003735 ... Q4Q5J4 38722744
    811183 8rxx:LR (2.97) BS02 rna ? GO:0003735 ... Q4Q5J4 38722744
    811184 8rxx:LR (2.97) BS03 rna ? GO:0003735 ... Q4Q5J4 38722744
    811185 8rxx:LS (2.97) BS01 rna ? GO:0003735 ... Q4QEX4 38722744
    811186 8rxx:LS (2.97) BS02 rna ? GO:0003735 ... Q4QEX4 38722744
    811187 8rxx:LS (2.97) BS03 rna ? GO:0003735 ... Q4QEX4 38722744
    811188 8rxx:LT (2.97) BS01 rna ? GO:0002181 ... Q4QAX6 38722744
    811189 8rxx:LT (2.97) BS02 rna ? GO:0002181 ... Q4QAX6 38722744
    811190 8rxx:LT (2.97) BS03 rna ? GO:0002181 ... Q4QAX6 38722744
    811191 8rxx:LT (2.97) BS04 rna ? GO:0002181 ... Q4QAX6 38722744
    811192 8rxx:LT (2.97) BS05 rna ? GO:0002181 ... Q4QAX6 38722744
    811193 8rxx:LU (2.97) BS01 rna ? GO:0002181 ... Q4Q0X2 38722744
    811194 8rxx:LU (2.97) BS02 rna ? GO:0002181 ... Q4Q0X2 38722744
    811195 8rxx:LU (2.97) BS03 rna ? GO:0002181 ... Q4Q0X2 38722744
    811196 8rxx:LV (2.97) BS01 rna ? GO:0000027 ... Q4QJ20 38722744
    811197 8rxx:LV (2.97) BS02 rna ? GO:0000027 ... Q4QJ20 38722744
    811198 8rxx:LV (2.97) BS03 rna ? GO:0000027 ... Q4QJ20 38722744
    811199 8rxx:LW (2.97) BS01 rna ? GO:0002181 ... Q4QAC5 38722744
    811200 8rxx:LW (2.97) BS02 rna ? GO:0002181 ... Q4QAC5 38722744
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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