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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    810601 8roy:A (3.1) BS01 A1H18 ? GO:0000209 ... Q66K64 38513086
    810602 8rpy:0 (2.64) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    810603 8rpy:1 (2.64) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    810604 8rpy:2 (2.64) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    810605 8rpy:3 (2.64) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    810606 8rpy:4 (2.64) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    810607 8rpy:6 (2.64) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    810608 8rpy:C (2.64) BS01 rna ? GO:0000027 ... P60422 38730238
    810609 8rpy:D (2.64) BS01 rna ? GO:0000027 ... P60438 38730238
    810610 8rpy:E (2.64) BS01 rna ? GO:0001070 ... P60723 38730238
    810611 8rpy:E (2.64) BS02 peptide ? GO:0001070 ... P60723 38730238
    810612 8rpy:F (2.64) BS01 rna ? GO:0000027 ... P62399 38730238
    810613 8rpy:F (2.64) BS02 rna ? GO:0000027 ... P62399 38730238
    810614 8rpy:G (2.64) BS01 rna ? GO:0000027 ... P0AG55 38730238
    810615 8rpy:H (2.64) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    810616 8rpy:J (2.64) BS01 rna ? GO:0002181 ... P0AA10 38730238
    810617 8rpy:K (2.64) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    810618 8rpy:L (2.64) BS01 rna ? GO:0002181 ... P02413 38730238
    810619 8rpy:M (2.64) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    810620 8rpy:M (2.64) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    810621 8rpy:N (2.64) BS01 rna ? GO:0000027 ... P0AG44 38730238
    810622 8rpy:O (2.64) BS01 rna ? GO:0002181 ... P0C018 38730238
    810623 8rpy:O (2.64) BS02 rna ? GO:0002181 ... P0C018 38730238
    810624 8rpy:P (2.64) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    810625 8rpy:Q (2.64) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    810626 8rpy:R (2.64) BS01 rna ? GO:0002181 ... P0AG48 38730238
    810627 8rpy:S (2.64) BS01 rna ? GO:0002181 ... P61175 38730238
    810628 8rpy:T (2.64) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    810629 8rpy:U (2.64) BS01 rna ? GO:0000027 ... P60624 38730238
    810630 8rpy:V (2.64) BS01 rna ? GO:0000027 ... P68919 38730238
    810631 8rpy:V (2.64) BS02 rna ? GO:0000027 ... P68919 38730238
    810632 8rpy:W (2.64) BS01 rna ? N/A P0A7L8 38730238
    810633 8rpy:W (2.64) BS02 rna ? N/A P0A7L8 38730238
    810634 8rpy:X (2.64) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    810635 8rpy:Y (2.64) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    810636 8rpy:Z (2.64) BS01 rna ? GO:0000027 ... P0AG51 38730238
    810637 8rpz:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    810638 8rpz:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    810639 8rpz:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    810640 8rpz:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    810641 8rpz:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    810642 8rpz:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    810643 8rpz:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    810644 8rpz:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    810645 8rpz:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    810646 8rpz:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    810647 8rpz:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    810648 8rpz:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    810649 8rpz:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    810650 8rpz:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    810651 8rpz:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    810652 8rpz:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    810653 8rpz:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    810654 8rpz:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    810655 8rpz:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    810656 8rpz:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    810657 8rpz:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    810658 8rpz:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    810659 8rpz:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    810660 8rpz:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    810661 8rpz:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    810662 8rpz:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    810663 8rpz:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    810664 8rpz:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    810665 8rpz:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    810666 8rpz:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    810667 8rpz:W (2.44) BS01 rna ? N/A P0A7L8 38730238
    810668 8rpz:W (2.44) BS02 rna ? N/A P0A7L8 38730238
    810669 8rpz:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    810670 8rpz:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    810671 8rpz:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    810672 8rq0:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    810673 8rq0:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    810674 8rq0:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    810675 8rq0:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    810676 8rq0:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    810677 8rq0:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    810678 8rq0:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    810679 8rq0:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    810680 8rq0:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    810681 8rq0:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    810682 8rq0:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    810683 8rq0:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    810684 8rq0:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    810685 8rq0:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    810686 8rq0:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    810687 8rq0:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    810688 8rq0:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    810689 8rq0:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    810690 8rq0:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    810691 8rq0:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    810692 8rq0:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    810693 8rq0:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    810694 8rq0:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    810695 8rq0:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    810696 8rq0:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    810697 8rq0:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    810698 8rq0:S (2.44) BS02 peptide ? GO:0002181 ... P61175 38730238
    810699 8rq0:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    810700 8rq0:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    810701 8rq0:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    810702 8rq0:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    810703 8rq0:W (2.44) BS01 rna ? N/A P0A7L8 38730238
    810704 8rq0:W (2.44) BS02 rna ? N/A P0A7L8 38730238
    810705 8rq0:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    810706 8rq0:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    810707 8rq0:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    810708 8rq2:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    810709 8rq2:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    810710 8rq2:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    810711 8rq2:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    810712 8rq2:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    810713 8rq2:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    810714 8rq2:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    810715 8rq2:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    810716 8rq2:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    810717 8rq2:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    810718 8rq2:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    810719 8rq2:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    810720 8rq2:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    810721 8rq2:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    810722 8rq2:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    810723 8rq2:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    810724 8rq2:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    810725 8rq2:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    810726 8rq2:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    810727 8rq2:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    810728 8rq2:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    810729 8rq2:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    810730 8rq2:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    810731 8rq2:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    810732 8rq2:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    810733 8rq2:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    810734 8rq2:S (2.44) BS02 peptide ? GO:0002181 ... P61175 38730238
    810735 8rq2:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    810736 8rq2:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    810737 8rq2:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    810738 8rq2:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    810739 8rq2:W (2.44) BS01 rna ? N/A P0A7L8 38730238
    810740 8rq2:W (2.44) BS02 rna ? N/A P0A7L8 38730238
    810741 8rq2:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    810742 8rq2:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    810743 8rq2:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    810744 8rq4:A (3.45) BS01 Y01 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0005515 ... Q63120 38438394
    810745 8rq4:A (3.45) BS02 RTO 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0005515 ... Q63120 38438394
    810746 8rq4:A (3.45) BS03 RTO 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0005515 ... Q63120 38438394
    810747 8rqb:A (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810748 8rqb:B (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810749 8rqb:C (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810750 8rqb:D (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810751 8rqb:E (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810752 8rqb:F (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810753 8rqb:G (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810754 8rqb:H (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810755 8rqb:I (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810756 8rqb:J (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810757 8rqb:K (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810758 8rqb:L (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810759 8rqb:M (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810760 8rqb:N (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810761 8rqb:O (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810762 8rqb:P (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810763 8rqb:Q (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810764 8rqb:R (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810765 8rqb:S (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810766 8rqb:T (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810767 8rqb:U (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810768 8rqb:V (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810769 8rqb:W (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810770 8rqb:X (1.09) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 39277607
    810771 8rqf:A (3.41) BS01 BJU ? GO:0001618 ... Q14973 N/A
    810772 8rqf:B (3.41) BS01 BJU ? GO:0016032 ... Q76R62 N/A
    810773 8rqh:A (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    810774 8rqh:B (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    810775 8rqp:A (1.45) BS01 A1H2K ? GO:0009279 ... P18895 38585376
    810776 8rqp:A (1.45) BS02 A1H2K ? GO:0009279 ... P18895 38585376
    810777 8rqp:A (1.45) BS03 A1H2K ? GO:0009279 ... P18895 38585376
    810778 8rqp:A (1.45) BS04 A1H2K ? GO:0009279 ... P18895 38585376
    810779 8rqp:A (1.45) BS05 A1H2K ? GO:0009279 ... P18895 38585376
    810780 8rqp:A (1.45) BS06 A1H2K ? GO:0009279 ... P18895 38585376
    810781 8rqp:A (1.45) BS07 A1H2K ? GO:0009279 ... P18895 38585376
    810782 8rqp:A (1.45) BS08 A1H2K ? GO:0009279 ... P18895 38585376
    810783 8rqp:A (1.45) BS09 GOL ? GO:0009279 ... P18895 38585376
    810784 8rqp:A (1.45) BS10 A1H52 ? GO:0009279 ... P18895 38585376
    810785 8rqp:A (1.45) BS11 A1H2K ? GO:0009279 ... P18895 38585376
    810786 8rqp:A (1.45) BS12 A1H52 ? GO:0009279 ... P18895 38585376
    810787 8rqp:A (1.45) BS13 CA ? GO:0009279 ... P18895 38585376
    810788 8rqq:A (2.37) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810789 8rqq:A (2.37) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810790 8rqq:A (2.37) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810791 8rqq:A (2.37) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810792 8rqq:A (2.37) BS05 A1H2K ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810793 8rqq:A (2.37) BS06 A1H2K ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810794 8rqq:A (2.37) BS07 A1H2K ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810795 8rqq:A (2.37) BS08 A1H2K ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810796 8rqq:A (2.37) BS09 A1H52 ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810797 8rqq:A (2.37) BS10 A1H2K ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810798 8rqq:A (2.37) BS11 A1H2K ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810799 8rqq:A (2.37) BS12 A1H2K ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    810800 8rqr:A (2.19) BS01 A1H2K 2.3.1.269 GO:0005515 ... P23930 38585376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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