Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4043 4044 4045 4046 4047 4048 4049 4050 4051 4052 4053 4054 4055 4056 4057 4058 4059 4060 4061 4062 4063 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    810401 8rjc:W (2.90061) BS01 rna ? GO:0000027 ... G1SE28 38896445
    810402 8rjc:X (2.90061) BS01 rna ? GO:0000027 ... G1SE76 38896445
    810403 8rjc:X (2.90061) BS02 rna ? GO:0000027 ... G1SE76 38896445
    810404 8rjc:Y (2.90061) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    810405 8rjc:Y (2.90061) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    810406 8rjc:Z (2.90061) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    810407 8rjc:a (2.90061) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    810408 8rjc:b (2.90061) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    810409 8rjc:c (2.90061) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    810410 8rjc:d (2.90061) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    810411 8rjc:e (2.90061) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    810412 8rjc:f (2.90061) BS01 rna ? GO:0000049 ... G1SF08 38896445
    810413 8rjc:g (2.90061) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    810414 8rjc:g (2.90061) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    810415 8rjc:g (2.90061) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    810416 8rjc:h (2.90061) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    810417 8rjc:h (2.90061) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    810418 8rjc:i (2.90061) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    810419 8rjc:j (2.90061) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    810420 8rjc:j (2.90061) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    810421 8rjc:j (2.90061) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    810422 8rjc:k (2.90061) BS01 rna ? GO:0003735 ... G1U001 38896445
    810423 8rjc:l (2.90061) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    810424 8rjc:l (2.90061) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    810425 8rjc:o (2.90061) BS01 rna ? GO:0003735 ... G1T040 38896445
    810426 8rjc:o (2.90061) BS02 ZN ? GO:0003735 ... G1T040 38896445
    810427 8rjc:p (2.90061) BS01 rna ? GO:0003735 ... G1SY53 38896445
    810428 8rjc:p (2.90061) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    810429 8rjc:r (2.90061) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    810430 8rjc:w (2.90061) BS01 rna ? GO:0003723 ... G1TL06 38896445
    810431 8rjd:1 (2.78574) BS01 rna ? GO:0005048 ... P38377 38896445
    810432 8rjd:4 (2.78574) BS01 rna ? GO:0001501 ... A0A8C0RGL8 38896445
    810433 8rjd:5 (2.78574) BS01 rna ? GO:0005789 ... P16967 38896445
    810434 8rjd:7 (2.78574) BS01 rna ? GO:0005783 ... A0A8C0T6I4 38896445
    810435 8rjd:A (2.78574) BS01 rna ? GO:0002181 ... G1TT27 38896445
    810436 8rjd:C (2.78574) BS01 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    810437 8rjd:C (2.78574) BS02 rna ? GO:0003723 ... A0A5F9C3C5 38896445
    810438 8rjd:D (2.78574) BS01 rna ? GO:0000027 ... P19949 38896445
    810439 8rjd:D (2.78574) BS02 rna ? GO:0000027 ... P19949 38896445
    810440 8rjd:E (2.78574) BS01 rna ? GO:0000027 ... G1SKF7 38896445
    810441 8rjd:F (2.78574) BS01 rna ? GO:0000463 ... G1TUB1 38896445
    810442 8rjd:F (2.78574) BS02 rna ? GO:0000463 ... G1TUB1 38896445
    810443 8rjd:G (2.78574) BS01 rna ? GO:0000470 ... G1STW0 38896445
    810444 8rjd:G (2.78574) BS02 rna ? GO:0000470 ... G1STW0 38896445
    810445 8rjd:H (2.78574) BS01 rna ? GO:0002181 ... G1SWI6 38896445
    810446 8rjd:I (2.78574) BS01 rna ? GO:0000027 ... B7NZQ2 38896445
    810447 8rjd:I (2.78574) BS02 rna ? GO:0000027 ... B7NZQ2 38896445
    810448 8rjd:J (2.78574) BS01 rna ? GO:0003723 ... G1TUB8 38896445
    810449 8rjd:J (2.78574) BS02 rna ? GO:0003723 ... G1TUB8 38896445
    810450 8rjd:J (2.78574) BS03 rna ? GO:0003723 ... G1TUB8 38896445
    810451 8rjd:L (2.78574) BS01 rna ? GO:0003735 ... G1TPV0 38896445
    810452 8rjd:L (2.78574) BS02 rna ? GO:0003735 ... G1TPV0 38896445
    810453 8rjd:M (2.78574) BS01 rna ? GO:0003723 ... G1SZ12 38896445
    810454 8rjd:N (2.78574) BS01 rna ? GO:0002181 ... G1T0C1 38896445
    810455 8rjd:N (2.78574) BS02 rna ? GO:0002181 ... G1T0C1 38896445
    810456 8rjd:O (2.78574) BS01 rna ? GO:0003729 ... A0A0N8ETI8 38896445
    810457 8rjd:P (2.78574) BS01 rna ? GO:0002181 ... G1SCJ6 38896445
    810458 8rjd:P (2.78574) BS02 rna ? GO:0002181 ... G1SCJ6 38896445
    810459 8rjd:Q (2.78574) BS01 rna ? GO:0002181 ... F6QKI9 38896445
    810460 8rjd:R (2.78574) BS01 rna ? GO:0003723 ... G1TYL6 38896445
    810461 8rjd:S (2.78574) BS01 rna ? GO:0003735 ... A0A287APR1 38896445
    810462 8rjd:S (2.78574) BS02 rna ? GO:0003735 ... A0A287APR1 38896445
    810463 8rjd:T (2.78574) BS01 rna ? GO:0003735 ... G1SHQ2 38896445
    810464 8rjd:T (2.78574) BS02 rna ? GO:0003735 ... G1SHQ2 38896445
    810465 8rjd:U (2.78574) BS01 rna ? GO:0002181 ... Q4R5I3 38896445
    810466 8rjd:V (2.78574) BS01 rna ? GO:0000122 ... G1T6D1 38896445
    810467 8rjd:W (2.78574) BS01 rna ? GO:0000027 ... G1SE28 38896445
    810468 8rjd:X (2.78574) BS01 rna ? GO:0000027 ... G1SE76 38896445
    810469 8rjd:X (2.78574) BS02 rna ? GO:0000027 ... G1SE76 38896445
    810470 8rjd:Y (2.78574) BS01 rna ? GO:0002181 ... G1SQH0 38896445
    810471 8rjd:Y (2.78574) BS02 rna ? GO:0002181 ... G1SQH0 38896445
    810472 8rjd:Z (2.78574) BS01 rna ? GO:0003735 ... G1TXF6 38896445
    810473 8rjd:a (2.78574) BS01 rna ? GO:0003735 ... G1SNY0 38896445
    810474 8rjd:b (2.78574) BS01 rna ? GO:0002181 ... G1SGR6 38896445
    810475 8rjd:c (2.78574) BS01 rna ? GO:0002181 ... G1TDL2 38896445
    810476 8rjd:d (2.78574) BS01 rna ? GO:0002181 ... G1SHG0 38896445
    810477 8rjd:e (2.78574) BS01 rna ? GO:0003735 ... G1TUN8 38896445
    810478 8rjd:f (2.78574) BS01 rna ? GO:0000049 ... G1SF08 38896445
    810479 8rjd:g (2.78574) BS01 rna ? GO:0003735 ... G1TXG5 38896445
    810480 8rjd:g (2.78574) BS02 MG ? GO:0003735 ... G1TXG5 38896445
    810481 8rjd:g (2.78574) BS03 ZN ? GO:0003735 ... G1TXG5 38896445
    810482 8rjd:h (2.78574) BS01 rna ? GO:0000463 ... G1SIT5 38896445
    810483 8rjd:h (2.78574) BS02 rna ? GO:0000463 ... G1SIT5 38896445
    810484 8rjd:i (2.78574) BS01 rna ? GO:0002181 ... G1TTQ5 38896445
    810485 8rjd:j (2.78574) BS01 rna ? GO:0003723 ... U3KPD5 38896445
    810486 8rjd:j (2.78574) BS02 rna ? GO:0003723 ... U3KPD5 38896445
    810487 8rjd:j (2.78574) BS03 ZN ? GO:0003723 ... U3KPD5 38896445
    810488 8rjd:k (2.78574) BS01 rna ? GO:0003735 ... G1U001 38896445
    810489 8rjd:l (2.78574) BS01 rna ? GO:0003735 ... G1TTN1 38896445
    810490 8rjd:l (2.78574) BS02 rna ? GO:0003735 ... G1TTN1 38896445
    810491 8rjd:o (2.78574) BS01 rna ? GO:0003735 ... G1T040 38896445
    810492 8rjd:o (2.78574) BS02 ZN ? GO:0003735 ... G1T040 38896445
    810493 8rjd:p (2.78574) BS01 rna ? GO:0003735 ... G1SY53 38896445
    810494 8rjd:p (2.78574) BS02 ZN ? GO:0003735 ... G1SY53 38896445
    810495 8rjd:r (2.78574) BS01 rna ? GO:0003735 ... G1U7L1 38896445
    810496 8rjd:w (2.78574) BS01 rna ? GO:0003723 ... G1TL06 38896445
    810497 8rjv:A (1.91) BS01 A1H1J 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38753594
    810498 8rjw:B (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    810499 8rjw:C (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    810500 8rjw:D (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    810501 8rjw:E (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    810502 8rjw:F (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    810503 8rjw:G (2.3) BS01 dna ? GO:0000724 ... P43351 38658755
    810504 8rjy:A (1.97) BS01 A1H1K 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 38753594
    810505 8rjz:A (1.7) BS01 A1H1I 2.7.7.50
    3.4.19.12
    3.4.22.69    		 N/A P0DTD1 38753594
    810506 8rjz:B (1.7) BS01 A1H1I 2.7.7.50
    3.4.19.12
    3.4.22.69    		 N/A P0DTD1 38753594
    810507 8rk1:A (2.095) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    810508 8rke:B (2.7) BS01 MAN ? N/A Q05996 38490181
    810509 8rke:B (2.7) BS02 MAN ? N/A Q05996 38490181
    810510 8rkg:A (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810511 8rkg:A (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810512 8rkg:B (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810513 8rkg:B (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810514 8rkg:C (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810515 8rkg:C (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810516 8rkg:D (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810517 8rkg:D (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810518 8rkg:E (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810519 8rkg:E (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810520 8rkg:F (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810521 8rkg:F (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810522 8rkg:G (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810523 8rkg:G (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810524 8rkg:H (2.9) BS01 peptide ? N/A A1L3D9 38490181
    810525 8rkg:H (2.9) BS02 peptide ? N/A A1L3D9 38490181
    810526 8rkh:A (1.9) BS01 MAN ? N/A P20239 38490181
    810527 8rkq:A (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    810528 8rkq:D (2.6) BS01 9SZ 1.2.1.88 GO:0003842 ... P30038 38675584
    810529 8rkr:A (1.2) BS01 A1H1O 1.2.1.88 GO:0003842 ... P30038 38675584
    810530 8rks:A (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    810531 8rks:C (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    810532 8rks:E (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    810533 8rks:G (3.1) BS01 peptide ? GO:0005515 ... Q9UBQ0 38607248
    810534 8rm5:21 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    810535 8rm5:22 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    810536 8rm5:23 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    810537 8rm5:2B (6.9) BS01 rna ? GO:0000398 ... P08579 38778104
    810538 8rm5:2b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    810539 8rm5:2e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    810540 8rm5:2f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    810541 8rm5:2g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    810542 8rm5:41 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    810543 8rm5:42 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    810544 8rm5:43 (6.9) BS01 rna ? GO:0000243 ... P62318 38778104
    810545 8rm5:4e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    810546 8rm5:4f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    810547 8rm5:4g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    810548 8rm5:51 (6.9) BS01 rna ? GO:0000243 ... P62314 38778104
    810549 8rm5:52 (6.9) BS01 rna ? GO:0000245 ... P62316 38778104
    810550 8rm5:5b (6.9) BS01 rna ? GO:0000387 ... P14678 38778104
    810551 8rm5:5e (6.9) BS01 rna ? GO:0000245 ... P62304 38778104
    810552 8rm5:5f (6.9) BS01 rna ? GO:0000387 ... P62306 38778104
    810553 8rm5:5g (6.9) BS01 rna ? GO:0000245 ... P62308 38778104
    810554 8rm5:63 (6.9) BS01 rna ? GO:0000398 ... P62310 38778104
    810555 8rm5:68 (6.9) BS01 rna ? GO:0000398 ... O95777 38778104
    810556 8rm5:7 (6.9) BS01 rna ? GO:0000389 ... Q15459 38778104
    810557 8rm5:8 (6.9) BS01 rna ? GO:0000245 ... Q15428 38778104
    810558 8rm5:9 (6.9) BS01 rna ? GO:0000375 ... Q12874 38778104
    810559 8rm5:A (6.9) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    810560 8rm5:A (6.9) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    810561 8rm5:A (6.9) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    810562 8rm5:B1 (6.9) BS01 rna ? GO:0000245 ... O75533 38778104
    810563 8rm5:B1 (6.9) BS02 rna ? GO:0000245 ... O75533 38778104
    810564 8rm5:B6 (6.9) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    810565 8rm5:D (6.9) BS01 rna ? GO:0000245 ... P83876 38778104
    810566 8rm5:E (6.9) BS01 rna ? GO:0000375 ... Q96DI7 38778104
    810567 8rm5:F (6.9) BS01 rna ? GO:0000375 ... O43172 38778104
    810568 8rm5:J (6.9) BS01 rna ? GO:0000244 ... O43395 38778104
    810569 8rm5:L (6.9) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    810570 8rm5:L (6.9) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    810571 8rm5:M (6.9) BS01 rna ? GO:0000398 ... P55769 38778104
    810572 8rm5:N (6.9) BS01 rna ? GO:0000244 ... O94906 38778104
    810573 8rm6:A (2.05) BS01 dna ? GO:0003700 ... P10275 38604378
    810574 8rm6:A (2.05) BS02 dna ? GO:0003700 ... P10275 38604378
    810575 8rm6:A (2.05) BS03 ZN ? GO:0003700 ... P10275 38604378
    810576 8rm6:A (2.05) BS04 ZN ? GO:0003700 ... P10275 38604378
    810577 8rm6:B (2.05) BS01 dna ? GO:0003700 ... P10275 38604378
    810578 8rm6:B (2.05) BS02 dna ? GO:0003700 ... P10275 38604378
    810579 8rm6:B (2.05) BS03 ZN ? GO:0003700 ... P10275 38604378
    810580 8rm6:B (2.05) BS04 ZN ? GO:0003700 ... P10275 38604378
    810581 8rm7:A (2.25) BS01 dna ? GO:0003700 ... P10275 38604378
    810582 8rm7:A (2.25) BS02 dna ? GO:0003700 ... P10275 38604378
    810583 8rm7:A (2.25) BS03 ZN ? GO:0003700 ... P10275 38604378
    810584 8rm7:A (2.25) BS04 ZN ? GO:0003700 ... P10275 38604378
    810585 8rm7:B (2.25) BS01 dna ? GO:0003700 ... P10275 38604378
    810586 8rm7:B (2.25) BS02 dna ? GO:0003700 ... P10275 38604378
    810587 8rm7:B (2.25) BS03 ZN ? GO:0003700 ... P10275 38604378
    810588 8rm7:B (2.25) BS04 ZN ? GO:0003700 ... P10275 38604378
    810589 8rnd:A (1.56) BS01 peptide 3.4.22.27 N/A P25774 38811854
    810590 8rng:A (1.45) BS01 peptide ? N/A S6AU73 N/A
    810591 8rng:A (1.45) BS02 MG ? N/A S6AU73 N/A
    810592 8rng:A (1.45) BS03 MG ? N/A S6AU73 N/A
    810593 8rng:A (1.45) BS04 MG ? N/A S6AU73 N/A
    810594 8rng:B (1.45) BS01 MG ? GO:0000139 ... P61769 N/A
    810595 8rnh:A (1.6) BS01 peptide ? N/A S6AU73 38737448
    810596 8rom:A (1.69) BS01 FAD 2.7.7.2 GO:0003824 ... Q8NFF5 38688286
    810597 8roo:A (1.4) BS01 peptide ? N/A S6AU73 38737448
    810598 8roo:A (1.4) BS02 MG ? N/A S6AU73 38737448
    810599 8rop:A (1.15) BS01 peptide ? N/A S6AU73 38737448
    810600 8rox:A (3.3) BS01 A1H17 ? GO:0000209 ... Q66K64 38513086
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218